Rmu_co8464247.1_g000001

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8464247.1
OG0000337
Physical Location & Seq
Reverse (-)
1 .. 1846
1846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8464247.1_g000001.1.cds

Sequence Viewer

Length: 693 bp
atggggcagcagggtggtattgagatttctagcagtcctagtagtgtggtggatggattaatgaagccagtgataacgatggtggcagctcagattgcatatgcagcaacgggtattttctacaaacttgcagcagactctggaatgaacctcaatattctcgttgcctaccgtctcatgttttcctctgccattatcgttcctcttgctcttatactcgaaaggggatcattgtcacaaaatttattcatcgagggactggccttaacatcaccgacatttgttgcagccactgcaaatctgattccggcggttaccttgatcatggccatctgttttaggttggagaagttgacactaggaagccatgcagggaaggcaaagcttgtggggacagtggtaggtattggtggtgctatgatctttaccttcttcaaaggaccagagctctccatttggtcaactcacgttgaccttcttcgaggactccacgcggcaccatcaccgtcatcggtctcgttacacagaagcaccggtagtcacttgctgggctccttctcggctctcggcagcgccgtttcctatgcaatgtggctcacagttcagtcggtagcttttgcactctgcgtggagagggattggagccagtggaaattgggttggaacatcaagcttctcacagctgcatatacg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

231

Amino Acids

24.42

Weight (kDa)

9.2

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 496
AccII CGCG 1 cut(s) 494
AciI CCGC 2 cut(s) 311, 494
AclWI GGATC 1 cut(s) 235
AcoI YGGCCR 1 cut(s) 327
AcsI RAATTY 1 cut(s) 241
AgeI ACCGGT 1 cut(s) 533
AgsI TTSAA 1 cut(s) 436
AluBI AGCT 6 cut(s) 89, 385, 448, 614, 673, 683
AluI AGCT 6 cut(s) 89, 385, 448, 614, 673, 683
Alw21I GWGCWC 1 cut(s) 450
Alw26I GTCTC 2 cut(s) 179, 520
AlwI GGATC 1 cut(s) 235
AlwNI CAGNNNCTG 2 cut(s) 140, 293
AoxI GGCC 2 cut(s) 261, 327
ApeKI GCWGC 7 cut(s) 7, 86, 104, 131, 287, 570, 683
ApoI RAATTY 1 cut(s) 241
AseI ATTAAT 1 cut(s) 59
AsiGI ACCGGT 1 cut(s) 533
AspLEI GCGC 1 cut(s) 575
AspS9I GGNCC 1 cut(s) 440
AsuHPI GGTGA 2 cut(s) 264, 495
AvaII GGWCC 1 cut(s) 440
BalI TGGCCA 1 cut(s) 329
BanI GGYRCC 1 cut(s) 496
BanII GRGCYC 2 cut(s) 450, 554
Bbv12I GWGCWC 1 cut(s) 450
BbvI GCAGC 7 cut(s) 19, 98, 116, 143, 299, 582, 670
BccI CCATC 4 cut(s) 47, 73, 338, 508
BceAI ACGGC 1 cut(s) 560
BclI TGATCA 1 cut(s) 321
BcoDI GTCTC 2 cut(s) 179, 520
BfaI CTAG 3 cut(s) 30, 39, 359
BfoI RGCGCY 1 cut(s) 576
BisI GCNGC 8 cut(s) 8, 87, 105, 132, 288, 495, 571, 684
BlsI GCNGC 8 cut(s) 9, 88, 106, 133, 289, 496, 572, 685
Bme18I GGWCC 1 cut(s) 440
BmgT120I GGNCC 1 cut(s) 440
BmiI GGNNCC 3 cut(s) 498, 553, 644
BsaI GGTCTC 1 cut(s) 520
BsaWI WCCGGW 1 cut(s) 533
Bse118I RCCGGY 1 cut(s) 533
Bse1I ACTGG 3 cut(s) 68, 264, 646
Bse3DI GCAATG 1 cut(s) 594
BseGI GGATG 1 cut(s) 58
BseMI GCAATG 1 cut(s) 594
BseMII CTCAG 1 cut(s) 104
BseNI ACTGG 3 cut(s) 68, 264, 646
BseXI GCAGC 7 cut(s) 19, 98, 116, 143, 299, 582, 670
BseYI CCCAGC 1 cut(s) 547
Bsh1236I CGCG 1 cut(s) 494
BshFI GGCC 2 cut(s) 263, 329
BshNI GGYRCC 1 cut(s) 496
BshTI ACCGGT 1 cut(s) 533
BsiHKAI GWGCWC 1 cut(s) 450
BsiSI CCGG 2 cut(s) 308, 534
BslFI GGGAC 2 cut(s) 270, 406
BsmAI GTCTC 2 cut(s) 179, 520
BsmBI CGTCTC 1 cut(s) 179
BsmFI GGGAC 2 cut(s) 270, 406
BsnI GGCC 2 cut(s) 263, 329
Bso31I GGTCTC 1 cut(s) 520
Bsp1286I GDGCHC 2 cut(s) 450, 554
Bsp143I GATC 3 cut(s) 227, 321, 420
BspACI CCGC 2 cut(s) 311, 494
BspANI GGCC 2 cut(s) 263, 329
BspCNI CTCAG 1 cut(s) 103
BspFNI CGCG 1 cut(s) 494
BspLI GGNNCC 3 cut(s) 498, 553, 644
BspPI GGATC 1 cut(s) 235
BspT107I GGYRCC 1 cut(s) 496
BspTNI GGTCTC 1 cut(s) 520
BsrDI GCAATG 1 cut(s) 594
BsrFI RCCGGY 1 cut(s) 533
BsrI ACTGG 3 cut(s) 68, 264, 646
BssAI RCCGGY 1 cut(s) 533
BssMI GATC 3 cut(s) 227, 321, 420
Bst4CI ACNGT 4 cut(s) 173, 397, 507, 601
BstAPI GCANNNNNTGC 1 cut(s) 293
BstDEI CTNAG 1 cut(s) 90
BstEII GGTNACC 1 cut(s) 313
BstF5I GGATG 1 cut(s) 58
BstFNI CGCG 1 cut(s) 494
BstH2I RGCGCY 1 cut(s) 576
BstHHI GCGC 1 cut(s) 575
BstKTI GATC 3 cut(s) 230, 324, 423
BstMAI GTCTC 2 cut(s) 179, 520
BstMBI GATC 3 cut(s) 227, 321, 420
BstMWI GCNNNNNNNGC 4 cut(s) 95, 104, 293, 377
BstPI GGTNACC 1 cut(s) 313
BstUI CGCG 1 cut(s) 494
BstV1I GCAGC 7 cut(s) 19, 98, 116, 143, 299, 582, 670
BsuRI GGCC 2 cut(s) 263, 329
BtsCI GGATG 1 cut(s) 58
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 4 cut(s) 75, 291, 402, 653
CaiI CAGNNNCTG 2 cut(s) 140, 293
CfoI GCGC 1 cut(s) 575
Cfr10I RCCGGY 1 cut(s) 533
Cfr13I GGNCC 1 cut(s) 440
CspAI ACCGGT 1 cut(s) 533
CspCI CAANNNNNGTGG 2 cut(s) 369, 404
CviAII CATG 3 cut(s) 178, 325, 368
DdeI CTNAG 1 cut(s) 90
DpnI GATC 3 cut(s) 229, 323, 422
DpnII GATC 3 cut(s) 227, 321, 420
EaeI YGGCCR 1 cut(s) 327
Ecl136II GAGCTC 1 cut(s) 448
Eco24I GRGCYC 2 cut(s) 450, 554
Eco31I GGTCTC 1 cut(s) 520
Eco47I GGWCC 1 cut(s) 440
Eco53kI GAGCTC 1 cut(s) 448
Eco91I GGTNACC 1 cut(s) 313
EcoICRI GAGCTC 1 cut(s) 448
EcoO65I GGTNACC 1 cut(s) 313
EcoT38I GRGCYC 2 cut(s) 450, 554
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 3 cut(s) 181, 328, 371
FaqI GGGAC 2 cut(s) 270, 406
FatI CATG 3 cut(s) 177, 324, 367
FauNDI CATATG 1 cut(s) 100
FbaI TGATCA 1 cut(s) 321
Fnu4HI GCNGC 8 cut(s) 8, 87, 105, 132, 288, 495, 571, 684
FokI GGATG 1 cut(s) 65
FriOI GRGCYC 2 cut(s) 450, 554
Fsp4HI GCNGC 8 cut(s) 8, 87, 105, 132, 288, 495, 571, 684
FspBI CTAG 3 cut(s) 30, 39, 359
GlaI GCGC 1 cut(s) 574
GluI GCNGC 8 cut(s) 8, 87, 105, 132, 288, 495, 571, 684
GsaI CCCAGC 1 cut(s) 551
HaeII RGCGCY 1 cut(s) 576
HaeIII GGCC 2 cut(s) 263, 329
HapII CCGG 2 cut(s) 308, 534
HhaI GCGC 1 cut(s) 575
Hin1II CATG 3 cut(s) 181, 328, 371
Hin6I GCGC 1 cut(s) 573
HinP1I GCGC 1 cut(s) 573
HincII GTYRAC 3 cut(s) 354, 462, 472
HindII GTYRAC 3 cut(s) 354, 462, 472
HindIII AAGCTT 2 cut(s) 383, 671
HinfI GANTC 3 cut(s) 137, 304, 486
HpaII CCGG 2 cut(s) 308, 534
HphI GGTGA 2 cut(s) 264, 495
Hpy166II GTNNAC 3 cut(s) 354, 462, 472
Hpy188I TCNGA 2 cut(s) 93, 303
Hpy188III TCNNGA 1 cut(s) 141
Hpy8I GTNNAC 3 cut(s) 354, 462, 472
HpyAV CCTTC 4 cut(s) 370, 439, 485, 565
HpyCH4III ACNGT 4 cut(s) 173, 397, 507, 601
HpyCH4IV ACGT 1 cut(s) 468
HpyCH4V TGCA 9 cut(s) 98, 104, 131, 287, 296, 371, 587, 620, 686
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 104, 293, 377
HpyF3I CTNAG 1 cut(s) 90
HpySE526I ACGT 1 cut(s) 468
Hsp92II CATG 3 cut(s) 181, 328, 371
HspAI GCGC 1 cut(s) 573
Ksp22I TGATCA 1 cut(s) 321
Kzo9I GATC 3 cut(s) 227, 321, 420
LmnI GCTCC 2 cut(s) 557, 642
LpnPI CCDG 9 cut(s) 81, 126, 245, 321, 357, 456, 533, 547, 659
Lsp1109I GCAGC 7 cut(s) 19, 98, 116, 143, 299, 582, 670
MaeI CTAG 3 cut(s) 30, 39, 359
MaeII ACGT 1 cut(s) 468
MaeIII GTNAC 4 cut(s) 234, 313, 519, 539
MalI GATC 3 cut(s) 229, 323, 422
MboI GATC 3 cut(s) 227, 321, 420
MboII GAAGA 2 cut(s) 424, 470
MhlI GDGCHC 2 cut(s) 450, 554
MlsI TGGCCA 1 cut(s) 329
MluCI AATT 2 cut(s) 241, 653
MluNI TGGCCA 1 cut(s) 329
MlyI GAGTC 2 cut(s) 131, 480
MmeI TCCRAC 2 cut(s) 324, 641
MnlI CCTC 6 cut(s) 161, 196, 213, 247, 476, 627
Mox20I TGGCCA 1 cut(s) 329
MscI TGGCCA 1 cut(s) 329
MseI TTAA 2 cut(s) 59, 266
Msp20I TGGCCA 1 cut(s) 329
MspA1I CMGCKG 1 cut(s) 683
MspI CCGG 2 cut(s) 308, 534
MvnI CGCG 1 cut(s) 494
MwoI GCNNNNNNNGC 4 cut(s) 95, 104, 293, 377
NdeI CATATG 1 cut(s) 100
NdeII GATC 3 cut(s) 227, 321, 420
NlaIII CATG 3 cut(s) 181, 328, 371
NlaIV GGNNCC 3 cut(s) 498, 553, 644
NmeAIII GCCGAG 2 cut(s) 539, 546
NmuCI GTSAC 2 cut(s) 234, 539
PcsI WCGNNNNNNNCGW 1 cut(s) 573
PfeI GAWTC 1 cut(s) 304
PinAI ACCGGT 1 cut(s) 533
PkrI GCNGC 8 cut(s) 9, 88, 106, 133, 289, 496, 572, 685
PleI GAGTC 2 cut(s) 131, 480
PpsI GAGTC 2 cut(s) 131, 480
PshBI ATTAAT 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 450
PspEI GGTNACC 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 547
PspN4I GGNNCC 3 cut(s) 498, 553, 644
PspPI GGNCC 1 cut(s) 440
PstNI CAGNNNCTG 2 cut(s) 140, 293
PvuII CAGCTG 1 cut(s) 683
SacI GAGCTC 1 cut(s) 450
SaqAI TTAA 2 cut(s) 59, 266
SatI GCNGC 8 cut(s) 8, 87, 105, 132, 288, 495, 571, 684
Sau3AI GATC 3 cut(s) 227, 321, 420
Sau96I GGNCC 1 cut(s) 440
SchI GAGTC 2 cut(s) 131, 480
SduI GDGCHC 2 cut(s) 450, 554
SinI GGWCC 1 cut(s) 440
Sse9I AATT 2 cut(s) 241, 653
SsiI CCGC 2 cut(s) 311, 494
SspI AATATT 1 cut(s) 157
SspMI CTAG 3 cut(s) 30, 39, 359
SstI GAGCTC 1 cut(s) 450
TaaI ACNGT 4 cut(s) 173, 397, 507, 601
TaiI ACGT 1 cut(s) 471
TaqI TCGA 3 cut(s) 219, 252, 481
TaqII GACCGA 1 cut(s) 502
TasI AATT 2 cut(s) 241, 653
TauI GCSGC 1 cut(s) 497
TfiI GAWTC 1 cut(s) 304
Tru1I TTAA 2 cut(s) 59, 266
Tru9I TTAA 2 cut(s) 59, 266
TscAI CASTG 4 cut(s) 75, 298, 402, 653
TseFI GTSAC 2 cut(s) 234, 539
TseI GCWGC 7 cut(s) 7, 86, 104, 131, 287, 570, 683
Tsp45I GTSAC 2 cut(s) 234, 539
TspDTI ATGAA 3 cut(s) 77, 161, 238
TspRI CASTG 4 cut(s) 75, 298, 402, 653
VpaK11BI GGWCC 1 cut(s) 440
VspI ATTAAT 1 cut(s) 59
XapI RAATTY 1 cut(s) 241
XspI CTAG 3 cut(s) 30, 39, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.