RchiOBHm_Chr1g0374241

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000337
Physical Location & Seq
Forward (+)
62120757 .. 62122396
1640 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59806

Sequence Viewer

Length: 978 bp
ATGTTTTCGTTGCCTACCGAGTACCGACTGATGTTTTCAGCGGCCTTTATGGTTCCACTGGCTCTGATACTTGAGAGGAAGAGAAGGCCAAAACTTACTTGGGTTGTGTTGTTTCAAGCTTTTCTCTGCGGCCTAATTGGGGCTGCCGCGACACAAAACTTATATATTGTGAGTCTAGCGCTGACGTCACCCACATTTCTTGCAGCCATCTCCAATCTCCTCCCAGCCATTACCTTCGTGGTTGCTCTATGTTTCCGCCAGGAGAAGTTGACATTGGGATATTCCGGCATAGCCAAAATTGTTGGGACCGTGGTTGGGATAGGAGGAGCAATGCTTTTCACTTTCTACCGAGGACCTGTATTTACCATTTGGTCCACTCATATTGACCTTCTACGGCAATATCACAACACTAATAGCGTCTCATCCTCAAGCCACAAGAACAATCATGCGTTGGGGTTCCTGGCAGGCTTCGGCAGCATCTTGTGCTTCGGAATATGGCTCACAGTTCAGGCGAAGATGAGCAAGAGATATCCCTGTCCTTACTCGAGCACGGCTTTGATGTGCATCATGGGATCCATCCAGTCCGTTATTTTTGCGCTTTGCATGGAGAGAGATTGGAATCAATGGAAGATGGGTTGGGATATTAGGTTGTGGACTGCTGCATACTCGGGAATCATGGTTTCTGGAGTGGCAGTGGTTTTGATGTCTTGGTCTGTACAAAAGCGAGGGGCACTTTTTGTGTCAATTTTCGCTCCACTGGTACTGTTGATGGTAGCCCTTGCTAGTTGCTTGTTGTTGGAGGAAAAATCTAGCCTCGGAAGTGTATTGGGAGGGGTTCTAATTGTGTGCGGGCTATACATGGTGCTGTGGGGAAAAAGCAAAGAAGAACCATCATCACTTGTATTACCCTCATCGACAATAGCTCCCCGAAATTCCAAGAACATAGATAGCGTTCCAGTTCCATTGAATGTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

325

Amino Acids

35.51

Weight (kDa)

9.55

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 8 - 114 2.2e-09 EamA-like transporter family
EamA PF00892 151 - 289 5.3e-14 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 188
AccII CGCG 1 cut(s) 149
AciI CCGC 5 cut(s) 41, 129, 147, 256, 849
AclWI GGATC 2 cut(s) 567, 580
AcsI RAATTY 1 cut(s) 931
AcyI GRCGYC 1 cut(s) 185
AfaI GTAC 3 cut(s) 23, 717, 762
AfeI AGCGCT 1 cut(s) 180
AfiI CCNNNNNNNGG 2 cut(s) 139, 315
AgsI TTSAA 2 cut(s) 116, 967
AjnI CCWGG 2 cut(s) 258, 459
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AluBI AGCT 2 cut(s) 119, 923
AluI AGCT 2 cut(s) 119, 923
Alw21I GWGCWC 1 cut(s) 551
Alw26I GTCTC 1 cut(s) 424
AlwI GGATC 2 cut(s) 567, 580
Ama87I CYCGRG 2 cut(s) 544, 667
Aor51HI AGCGCT 1 cut(s) 180
AoxI GGCC 3 cut(s) 42, 86, 130
ApeKI GCWGC 4 cut(s) 143, 203, 474, 659
ApoI RAATTY 1 cut(s) 931
AspLEI GCGC 2 cut(s) 181, 598
AspS9I GGNCC 3 cut(s) 306, 353, 372
AsuHPI GGTGA 1 cut(s) 180
AvaI CYCGRG 2 cut(s) 544, 667
AvaII GGWCC 3 cut(s) 306, 353, 372
BaeGI GKGCMC 1 cut(s) 733
BamHI GGATCC 1 cut(s) 572
Bbv12I GWGCWC 1 cut(s) 551
BbvI GCAGC 4 cut(s) 130, 215, 486, 646
BccI CCATC 5 cut(s) 215, 584, 625, 763, 898
BceAI ACGGC 2 cut(s) 410, 567
BciT130I CCWGG 2 cut(s) 260, 461
BcoDI GTCTC 1 cut(s) 424
BfaI CTAG 3 cut(s) 176, 783, 810
BfoI RGCGCY 1 cut(s) 182
BisI GCNGC 7 cut(s) 42, 130, 144, 147, 204, 475, 660
BlsI GCNGC 7 cut(s) 43, 131, 145, 148, 205, 476, 661
Bme1390I CCNGG 2 cut(s) 260, 461
Bme18I GGWCC 3 cut(s) 306, 353, 372
BmeT110I CYCGRG 2 cut(s) 544, 667
BmgT120I GGNCC 3 cut(s) 306, 353, 372
BmiI GGNNCC 4 cut(s) 54, 307, 458, 574
BmrFI CCNGG 2 cut(s) 260, 461
BmsI GCATC 2 cut(s) 486, 573
BpmI CTGGAG 1 cut(s) 705
BpuEI CTTGAG 2 cut(s) 92, 412
BsaBI GATNNNNATC 2 cut(s) 563, 618
BsaHI GRCGYC 1 cut(s) 185
BsaJI CCNNGG 3 cut(s) 309, 349, 814
BsaXI ACNNNNNCTCC 4 cut(s) 678, 708, 907, 937
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 315
Bse1I ACTGG 4 cut(s) 63, 580, 762, 956
Bse3DI GCAATG 1 cut(s) 336
Bse8I GATNNNNATC 2 cut(s) 563, 618
BseBI CCWGG 2 cut(s) 260, 461
BseDI CCNNGG 3 cut(s) 309, 349, 814
BseGI GGATG 2 cut(s) 422, 576
BseJI GATNNNNATC 2 cut(s) 563, 618
BseLI CCNNNNNNNGG 2 cut(s) 139, 315
BseMI GCAATG 1 cut(s) 336
BseNI ACTGG 4 cut(s) 63, 580, 762, 956
BseRI GAGGAG 2 cut(s) 209, 339
BseSI GKGCMC 1 cut(s) 733
BseXI GCAGC 4 cut(s) 130, 215, 486, 646
BseYI CCCAGC 1 cut(s) 223
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 3 cut(s) 44, 88, 132
BsiHKAI GWGCWC 1 cut(s) 551
BsiHKCI CYCGRG 2 cut(s) 544, 667
BsiSI CCGG 1 cut(s) 285
BslFI GGGAC 1 cut(s) 319
BslI CCNNNNNNNGG 2 cut(s) 139, 315
BsmAI GTCTC 1 cut(s) 424
BsmBI CGTCTC 1 cut(s) 424
BsmFI GGGAC 1 cut(s) 319
BsnI GGCC 3 cut(s) 44, 88, 132
BsoBI CYCGRG 2 cut(s) 544, 667
Bsp1286I GDGCHC 2 cut(s) 551, 733
Bsp1407I TGTACA 1 cut(s) 715
Bsp143I GATC 1 cut(s) 572
BspACI CCGC 5 cut(s) 41, 129, 147, 256, 849
BspANI GGCC 3 cut(s) 44, 88, 132
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 4 cut(s) 54, 307, 458, 574
BspPI GGATC 2 cut(s) 567, 580
BsrDI GCAATG 1 cut(s) 336
BsrGI TGTACA 1 cut(s) 715
BsrI ACTGG 4 cut(s) 63, 580, 762, 956
BssECI CCNNGG 3 cut(s) 309, 349, 814
BssMI GATC 1 cut(s) 572
BssNI GRCGYC 1 cut(s) 185
Bst2UI CCWGG 2 cut(s) 260, 461
Bst4CI ACNGT 3 cut(s) 310, 505, 765
Bst6I CTCTTC 1 cut(s) 74
BstACI GRCGYC 1 cut(s) 185
BstAPI GCANNNNNTGC 1 cut(s) 483
BstAUI TGTACA 1 cut(s) 715
BstC8I GCNNGC 2 cut(s) 466, 851
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 2 cut(s) 422, 576
BstFNI CGCG 1 cut(s) 149
BstH2I RGCGCY 1 cut(s) 182
BstHHI GCGC 2 cut(s) 181, 598
BstKTI GATC 1 cut(s) 575
BstMAI GTCTC 1 cut(s) 424
BstMBI GATC 1 cut(s) 572
BstMWI GCNNNNNNNGC 2 cut(s) 474, 483
BstNI CCWGG 2 cut(s) 260, 461
BstSCI CCNGG 2 cut(s) 258, 459
BstSLI GKGCMC 1 cut(s) 733
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 4 cut(s) 130, 215, 486, 646
BstX2I RGATCY 1 cut(s) 572
BstYI RGATCY 1 cut(s) 572
BsuRI GGCC 3 cut(s) 44, 88, 132
BtgI CCRYGG 1 cut(s) 309
BtsCI GGATG 2 cut(s) 422, 576
BtsI GCAGTG 1 cut(s) 699
BtsIMutI CAGTG 3 cut(s) 56, 699, 755
Cac8I GCNNGC 2 cut(s) 466, 851
CfoI GCGC 2 cut(s) 181, 598
Cfr13I GGNCC 3 cut(s) 306, 353, 372
CseI GACGC 1 cut(s) 406
Csp6I GTAC 3 cut(s) 22, 716, 761
CspCI CAANNNNNGTGG 4 cut(s) 181, 216, 364, 399
CviAII CATG 5 cut(s) 446, 568, 604, 676, 859
CviQI GTAC 3 cut(s) 22, 716, 761
DpnI GATC 1 cut(s) 574
DpnII GATC 1 cut(s) 572
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
EciI GGCGGA 1 cut(s) 245
Eco32I GATATC 1 cut(s) 530
Eco47I GGWCC 3 cut(s) 306, 353, 372
Eco47III AGCGCT 1 cut(s) 180
Eco88I CYCGRG 2 cut(s) 544, 667
EcoO109I RGGNCCY 1 cut(s) 353
EcoRII CCWGG 2 cut(s) 258, 459
EcoRV GATATC 1 cut(s) 530
Esp3I CGTCTC 1 cut(s) 424
FaeI CATG 5 cut(s) 449, 571, 607, 679, 862
FaqI GGGAC 1 cut(s) 319
FatI CATG 5 cut(s) 445, 567, 603, 675, 858
FauI CCCGC 1 cut(s) 842
Fnu4HI GCNGC 7 cut(s) 42, 130, 144, 147, 204, 475, 660
FokI GGATG 2 cut(s) 409, 563
Fsp4HI GCNGC 7 cut(s) 42, 130, 144, 147, 204, 475, 660
FspBI CTAG 3 cut(s) 176, 783, 810
GlaI GCGC 2 cut(s) 180, 597
GluI GCNGC 7 cut(s) 42, 130, 144, 147, 204, 475, 660
GsaI CCCAGC 1 cut(s) 227
GsuI CTGGAG 1 cut(s) 705
HaeII RGCGCY 1 cut(s) 182
HaeIII GGCC 3 cut(s) 44, 88, 132
HapII CCGG 1 cut(s) 285
HgaI GACGC 1 cut(s) 406
HhaI GCGC 2 cut(s) 181, 598
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 5 cut(s) 449, 571, 607, 679, 862
Hin6I GCGC 2 cut(s) 179, 596
HinP1I GCGC 2 cut(s) 179, 596
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HindIII AAGCTT 1 cut(s) 117
HinfI GANTC 3 cut(s) 172, 619, 672
HpaII CCGG 1 cut(s) 285
HphI GGTGA 1 cut(s) 180
Hpy166II GTNNAC 3 cut(s) 270, 375, 654
Hpy188I TCNGA 3 cut(s) 66, 491, 818
Hpy188III TCNNGA 2 cut(s) 669, 684
Hpy8I GTNNAC 3 cut(s) 270, 375, 654
HpyAV CCTTC 3 cut(s) 78, 244, 398
HpyCH4III ACNGT 3 cut(s) 310, 505, 765
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 4 cut(s) 203, 564, 603, 662
HpyF10VI GCNNNNNNNGC 2 cut(s) 474, 483
HpySE526I ACGT 1 cut(s) 185
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 5 cut(s) 449, 571, 607, 679, 862
HspAI GCGC 2 cut(s) 179, 596
Kzo9I GATC 1 cut(s) 572
LmnI GCTCC 3 cut(s) 326, 757, 928
Lsp1109I GCAGC 4 cut(s) 130, 215, 486, 646
LweI GCATC 2 cut(s) 486, 573
MaeI CTAG 3 cut(s) 176, 783, 810
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 186
MalI GATC 1 cut(s) 574
MboI GATC 1 cut(s) 572
MboII GAAGA 4 cut(s) 91, 526, 640, 896
MflI RGATCY 1 cut(s) 572
MhlI GDGCHC 2 cut(s) 551, 733
MluCI AATT 5 cut(s) 135, 297, 744, 840, 931
MlyI GAGTC 1 cut(s) 181
MmeI TCCRAC 2 cut(s) 777, 952
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 2 cut(s) 260, 461
MvaI CCWGG 2 cut(s) 260, 461
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 2 cut(s) 474, 483
NdeII GATC 1 cut(s) 572
NlaIII CATG 5 cut(s) 449, 571, 607, 679, 862
NlaIV GGNNCC 4 cut(s) 54, 307, 458, 574
NmuCI GTSAC 1 cut(s) 186
PaeR7I CTCGAG 1 cut(s) 544
PfeI GAWTC 2 cut(s) 619, 672
PkrI GCNGC 7 cut(s) 43, 131, 145, 148, 205, 476, 661
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
PpuMI RGGWCCY 1 cut(s) 353
Psp5II RGGWCCY 1 cut(s) 353
Psp6I CCWGG 2 cut(s) 258, 459
PspFI CCCAGC 1 cut(s) 223
PspGI CCWGG 2 cut(s) 258, 459
PspN4I GGNNCC 4 cut(s) 54, 307, 458, 574
PspPI GGNCC 3 cut(s) 306, 353, 372
PspPPI RGGWCCY 1 cut(s) 353
PspXI VCTCGAGB 1 cut(s) 544
PsuI RGATCY 1 cut(s) 572
RsaI GTAC 3 cut(s) 23, 717, 762
RsaNI GTAC 3 cut(s) 22, 716, 761
SatI GCNGC 7 cut(s) 42, 130, 144, 147, 204, 475, 660
Sau3AI GATC 1 cut(s) 572
Sau96I GGNCC 3 cut(s) 306, 353, 372
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 2 cut(s) 260, 461
SduI GDGCHC 2 cut(s) 551, 733
SetI ASST 7 cut(s) 121, 188, 236, 358, 390, 650, 925
SfaNI GCATC 2 cut(s) 486, 573
Sfr274I CTCGAG 1 cut(s) 544
SinI GGWCC 3 cut(s) 306, 353, 372
SlaI CTCGAG 1 cut(s) 544
SmlI CTYRAG 3 cut(s) 71, 427, 544
SmoI CTYRAG 3 cut(s) 71, 427, 544
Sse9I AATT 5 cut(s) 135, 297, 744, 840, 931
SsiI CCGC 5 cut(s) 41, 129, 147, 256, 849
SspMI CTAG 3 cut(s) 176, 783, 810
StyD4I CCNGG 2 cut(s) 258, 459
TaaI ACNGT 3 cut(s) 310, 505, 765
TaiI ACGT 1 cut(s) 188
TaqI TCGA 2 cut(s) 545, 914
TasI AATT 5 cut(s) 135, 297, 744, 840, 931
TatI WGTACW 1 cut(s) 715
TauI GCSGC 3 cut(s) 44, 132, 149
TfiI GAWTC 2 cut(s) 619, 672
TscAI CASTG 3 cut(s) 63, 699, 762
TseFI GTSAC 1 cut(s) 186
TseI GCWGC 4 cut(s) 143, 203, 474, 659
Tsp45I GTSAC 1 cut(s) 186
TspGWI ACGGA 1 cut(s) 574
TspRI CASTG 3 cut(s) 63, 699, 762
VpaK11BI GGWCC 3 cut(s) 306, 353, 372
XapI RAATTY 1 cut(s) 931
XcmI CCANNNNNNNNNTGG 2 cut(s) 96, 235
XhoI CTCGAG 1 cut(s) 544
XspI CTAG 3 cut(s) 176, 783, 810
ZraI GACGTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.