Rroxscaffold_3G00234350

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
20657652 .. 20660972
3321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00234350.1

Sequence Viewer

Length: 1116 bp
ATGGGTGGTAGTTGTTTTAATGCTTTGCATGGGTTGAAGCCATTGATGTTAATGCTGGTGGTTCAGTTTACATCTGCTGGAGTCAACTTGTTCTACAAACTGGCCGCTAATGATGGAATGGACATCAGGATTATTATTGCCTATCGCTTCAGTTTTGCCACAGTTTTCCTTGCTCCTATTGCTCTCTTCGTTGAAAGGGGAGCATTGTCACAAAATTTGTACATTGCAAGTTTAGCGTTAACGTCTGCAACATTTGCTCTCGCCATAAGTCAACTCATCCCGGCCATAACTTTTGTTTTGGCCATCTCCTTTGGGTACGTTGGAGAGATTGAATTTAAGGAGCGTAGGGGGAAGGCAAAGGTGTTGGGAACATTAATGGGAATAGGTGGAGCAATGCTTATGACCTTTTACAAAGGTCTGGAAATCCACTTATGGACCACCCATGTTGACCTTTTGCATAGTAGTCATCAGCAACAACCACACTTGGAGGCAGCAGCTTCGCATGAGTATGCTCATCGTCTGTTAGGTTGTCTTCTGGCTCTGGCCAGCTCCTTGGGTTACGCCTTGTGGCTAATTATTCAGGCTAAGATGGGTGAGAAATACCCCAGTTTTTATTCAAGCGCAGCTCTAATTTCACTTATGGGGTCAATCCAGTCCCTTGTTTTTGCCCTCTGCGTCGACAGGGACTGGAACCATTGGAAGTTGGGTTGGAATATTAGACTTCTAACAGTCTTATACCTGGGGACTGTGGGTACTGGAGTAAGTCTGACATGTACTACACTTTGCATAAGCATGAGAGGGCCTTTGTACGCGTCAGTTTTTGGGCCTTTGGTTCTTGTTCTTGTTGCCCTCGTTGGCTCTTTGGTGTTGGACGAGAAGCTGCACCTCGGAAGTGTGCTAGGAGCGGTTCTAATCGTTGGCGGCTTATATGCTGTTCTATGGGGAAAGAGCAAAGACATAAAGAAGGTGAATCAATCGGTGCCAACAACAAGCTATGAGGAGGAATCTGCAGGATCTGTAGTTGAAATTGTTTCAATGCCTCGGGATAATAATAAAGGCAATAACTACATGAATGAGACCGTCACAAATGGTCAACATGACCGTATAGAAACCTAG

Protein Analysis

371

Amino Acids

40.32

Weight (kDa)

8.2

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 175 - 313 1.1e-12 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 979
AccBSI CCGCTC 1 cut(s) 905
AccI GTMKAC 1 cut(s) 678
AccII CGCG 1 cut(s) 812
AciI CCGC 3 cut(s) 105, 905, 921
AclWI GGATC 1 cut(s) 1021
AcoI YGGCCR 4 cut(s) 102, 282, 300, 543
AcsI RAATTY 2 cut(s) 214, 332
AcuI CTGAAG 1 cut(s) 133
AfaI GTAC 5 cut(s) 221, 317, 754, 775, 809
AflIII ACRYGT 2 cut(s) 770, 810
AgsI TTSAA 6 cut(s) 37, 194, 332, 618, 1025, 1035
AjnI CCWGG 1 cut(s) 738
AluBI AGCT 5 cut(s) 497, 549, 626, 880, 993
AluI AGCT 5 cut(s) 497, 549, 626, 880, 993
Alw26I GTCTC 1 cut(s) 1070
AlwI GGATC 1 cut(s) 1021
AlwNI CAGNNNCTG 2 cut(s) 687, 1016
Ama87I CYCGRG 1 cut(s) 1041
AoxI GGCC 6 cut(s) 102, 282, 300, 543, 800, 824
ApeKI GCWGC 4 cut(s) 491, 494, 623, 880
ApoI RAATTY 2 cut(s) 214, 332
AseI ATTAAT 1 cut(s) 374
AspLEI GCGC 1 cut(s) 623
AspS9I GGNCC 3 cut(s) 435, 800, 824
AsuC2I CCSGG 1 cut(s) 281
AsuHPI GGTGA 2 cut(s) 605, 979
AvaI CYCGRG 1 cut(s) 1041
AvaII GGWCC 1 cut(s) 435
BaeI ACNNNNGTAYC 2 cut(s) 744, 777
BalI TGGCCA 2 cut(s) 302, 545
BanI GGYRCC 1 cut(s) 979
BbsI GAAGAC 1 cut(s) 524
BbvI GCAGC 4 cut(s) 503, 506, 635, 867
BccI CCATC 3 cut(s) 107, 311, 583
BcgI CGANNNNNNTGC 2 cut(s) 480, 514
BciT130I CCWGG 1 cut(s) 740
BcnI CCSGG 1 cut(s) 281
BcoDI GTCTC 1 cut(s) 1070
BfaI CTAG 2 cut(s) 899, 1114
BfmI CTRYAG 2 cut(s) 1008, 1017
BisI GCNGC 6 cut(s) 105, 492, 495, 624, 881, 922
BlsI GCNGC 6 cut(s) 106, 493, 496, 625, 882, 923
Bme1390I CCNGG 2 cut(s) 281, 740
Bme18I GGWCC 1 cut(s) 435
BmeT110I CYCGRG 1 cut(s) 1041
BmgT120I GGNCC 3 cut(s) 435, 800, 824
BmiI GGNNCC 2 cut(s) 692, 981
BmrFI CCNGG 2 cut(s) 281, 740
BmrI ACTGGG 1 cut(s) 600
BmuI ACTGGG 1 cut(s) 600
BpiI GAAGAC 1 cut(s) 524
BpmI CTGGAG 2 cut(s) 99, 777
BpuMI CCSGG 1 cut(s) 281
BsaI GGTCTC 1 cut(s) 1070
BsaJI CCNNGG 4 cut(s) 552, 739, 886, 1040
Bse1I ACTGG 5 cut(s) 105, 606, 652, 692, 760
Bse3DI GCAATG 2 cut(s) 222, 399
BseBI CCWGG 1 cut(s) 740
BseDI CCNNGG 4 cut(s) 552, 739, 886, 1040
BseGI GGATG 1 cut(s) 276
BseMI GCAATG 2 cut(s) 222, 399
BseNI ACTGG 5 cut(s) 105, 606, 652, 692, 760
BseRI GAGGAG 1 cut(s) 1013
BseXI GCAGC 4 cut(s) 503, 506, 635, 867
BsgI GTGCAG 1 cut(s) 866
Bsh1236I CGCG 1 cut(s) 812
BshFI GGCC 6 cut(s) 104, 284, 302, 545, 802, 826
BshNI GGYRCC 1 cut(s) 979
BsiHKCI CYCGRG 1 cut(s) 1041
BsiSI CCGG 1 cut(s) 281
BslFI GGGAC 3 cut(s) 640, 698, 757
BsmAI GTCTC 1 cut(s) 1070
BsmFI GGGAC 3 cut(s) 640, 698, 757
BsnI GGCC 6 cut(s) 104, 284, 302, 545, 802, 826
Bso31I GGTCTC 1 cut(s) 1070
BsoBI CYCGRG 1 cut(s) 1041
Bsp1407I TGTACA 1 cut(s) 219
Bsp143I GATC 1 cut(s) 1013
BspACI CCGC 3 cut(s) 105, 905, 921
BspANI GGCC 6 cut(s) 104, 284, 302, 545, 802, 826
BspFNI CGCG 1 cut(s) 812
BspLI GGNNCC 2 cut(s) 692, 981
BspMAI CTGCAG 1 cut(s) 1012
BspPI GGATC 1 cut(s) 1021
BspT107I GGYRCC 1 cut(s) 979
BspTNI GGTCTC 1 cut(s) 1070
BsrBI CCGCTC 1 cut(s) 905
BsrDI GCAATG 2 cut(s) 222, 399
BsrGI TGTACA 1 cut(s) 219
BsrI ACTGG 5 cut(s) 105, 606, 652, 692, 760
BssECI CCNNGG 4 cut(s) 552, 739, 886, 1040
BssMI GATC 1 cut(s) 1013
BssT1I CCWWGG 1 cut(s) 552
Bst2UI CCWGG 1 cut(s) 740
Bst4CI ACNGT 5 cut(s) 163, 730, 748, 1081, 1103
Bst6I CTCTTC 1 cut(s) 191
BstAPI GCANNNNNTGC 1 cut(s) 254
BstAUI TGTACA 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 547
BstDEI CTNAG 1 cut(s) 585
BstF5I GGATG 1 cut(s) 276
BstFNI CGCG 1 cut(s) 812
BstHHI GCGC 1 cut(s) 623
BstKTI GATC 1 cut(s) 1016
BstMAI GTCTC 1 cut(s) 1070
BstMBI GATC 1 cut(s) 1013
BstMWI GCNNNNNNNGC 3 cut(s) 179, 233, 254
BstNI CCWGG 1 cut(s) 740
BstNSI RCATGY 1 cut(s) 774
BstSCI CCNGG 2 cut(s) 279, 738
BstSFI CTRYAG 2 cut(s) 1008, 1017
BstUI CGCG 1 cut(s) 812
BstV1I GCAGC 4 cut(s) 503, 506, 635, 867
BstV2I GAAGAC 1 cut(s) 524
BstX2I RGATCY 1 cut(s) 1013
BstXI CCANNNNNNTGG 1 cut(s) 553
BstYI RGATCY 1 cut(s) 1013
BsuRI GGCC 6 cut(s) 104, 284, 302, 545, 802, 826
BtsCI GGATG 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 547
CaiI CAGNNNCTG 2 cut(s) 687, 1016
CfoI GCGC 1 cut(s) 623
Cfr13I GGNCC 3 cut(s) 435, 800, 824
CseI GACGC 2 cut(s) 664, 801
Csp6I GTAC 5 cut(s) 220, 316, 753, 774, 808
CspCI CAANNNNNGTGG 2 cut(s) 427, 462
CviAII CATG 7 cut(s) 29, 443, 503, 771, 793, 1069, 1097
CviQI GTAC 5 cut(s) 220, 316, 753, 774, 808
DdeI CTNAG 1 cut(s) 585
DpnI GATC 1 cut(s) 1015
DpnII GATC 1 cut(s) 1013
EaeI YGGCCR 4 cut(s) 102, 282, 300, 543
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Eco130I CCWWGG 1 cut(s) 552
Eco31I GGTCTC 1 cut(s) 1070
Eco47I GGWCC 1 cut(s) 435
Eco57I CTGAAG 1 cut(s) 133
Eco88I CYCGRG 1 cut(s) 1041
EcoO109I RGGNCCY 1 cut(s) 800
EcoRII CCWGG 1 cut(s) 738
EcoT14I CCWWGG 1 cut(s) 552
ErhI CCWWGG 1 cut(s) 552
FaeI CATG 7 cut(s) 32, 446, 506, 774, 796, 1072, 1100
FaqI GGGAC 3 cut(s) 640, 698, 757
FatI CATG 7 cut(s) 28, 442, 502, 770, 792, 1068, 1096
FblI GTMKAC 1 cut(s) 678
Fnu4HI GCNGC 6 cut(s) 105, 492, 495, 624, 881, 922
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 6 cut(s) 105, 492, 495, 624, 881, 922
FspBI CTAG 2 cut(s) 899, 1114
GlaI GCGC 1 cut(s) 622
GluI GCNGC 6 cut(s) 105, 492, 495, 624, 881, 922
GsuI CTGGAG 2 cut(s) 99, 777
HaeIII GGCC 6 cut(s) 104, 284, 302, 545, 802, 826
HapII CCGG 1 cut(s) 281
HgaI GACGC 2 cut(s) 664, 801
HhaI GCGC 1 cut(s) 623
Hin1II CATG 7 cut(s) 32, 446, 506, 774, 796, 1072, 1100
Hin6I GCGC 1 cut(s) 621
HinP1I GCGC 1 cut(s) 621
HincII GTYRAC 6 cut(s) 85, 240, 272, 448, 679, 1094
HindII GTYRAC 6 cut(s) 85, 240, 272, 448, 679, 1094
HinfI GANTC 3 cut(s) 81, 970, 1004
HpaI GTTAAC 1 cut(s) 240
HpaII CCGG 1 cut(s) 281
HphI GGTGA 2 cut(s) 605, 979
Hpy166II GTNNAC 7 cut(s) 69, 85, 240, 272, 448, 679, 1094
Hpy188I TCNGA 2 cut(s) 768, 890
Hpy188III TCNNGA 3 cut(s) 127, 419, 1043
Hpy8I GTNNAC 7 cut(s) 69, 85, 240, 272, 448, 679, 1094
Hpy99I CGWCG 1 cut(s) 680
HpyAV CCTTC 2 cut(s) 346, 958
HpyCH4III ACNGT 5 cut(s) 163, 730, 748, 1081, 1103
HpyCH4IV ACGT 2 cut(s) 242, 318
HpyCH4V TGCA 7 cut(s) 28, 227, 248, 457, 786, 883, 1010
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 233, 254
HpyF3I CTNAG 1 cut(s) 585
HpySE526I ACGT 2 cut(s) 242, 318
Hsp92II CATG 7 cut(s) 32, 446, 506, 774, 796, 1072, 1100
HspAI GCGC 1 cut(s) 621
KspAI GTTAAC 1 cut(s) 240
Kzo9I GATC 1 cut(s) 1013
LmnI GCTCC 6 cut(s) 178, 200, 340, 389, 554, 902
Lsp1109I GCAGC 4 cut(s) 503, 506, 635, 867
MaeI CTAG 2 cut(s) 899, 1114
MaeII ACGT 2 cut(s) 242, 318
MaeIII GTNAC 3 cut(s) 207, 557, 1081
MalI GATC 1 cut(s) 1015
MbiI CCGCTC 1 cut(s) 905
MboI GATC 1 cut(s) 1013
MboII GAAGA 2 cut(s) 178, 524
MflI RGATCY 1 cut(s) 1013
MlsI TGGCCA 2 cut(s) 302, 545
MluCI AATT 5 cut(s) 214, 332, 573, 630, 1026
MluI ACGCGT 1 cut(s) 810
MluNI TGGCCA 2 cut(s) 302, 545
MlyI GAGTC 1 cut(s) 90
MmeI TCCRAC 3 cut(s) 301, 689, 849
MnlI CCTC 8 cut(s) 481, 680, 791, 860, 896, 991, 994, 1050
Mox20I TGGCCA 2 cut(s) 302, 545
MscI TGGCCA 2 cut(s) 302, 545
MseI TTAA 5 cut(s) 18, 50, 239, 336, 374
MslI CAYNNNNRTG 2 cut(s) 507, 791
Msp20I TGGCCA 2 cut(s) 302, 545
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 2 cut(s) 281, 740
MvaI CCWGG 1 cut(s) 740
MvnI CGCG 1 cut(s) 812
MwoI GCNNNNNNNGC 3 cut(s) 179, 233, 254
NciI CCSGG 1 cut(s) 281
NdeII GATC 1 cut(s) 1013
NlaIII CATG 7 cut(s) 32, 446, 506, 774, 796, 1072, 1100
NlaIV GGNNCC 2 cut(s) 692, 981
NmuCI GTSAC 2 cut(s) 207, 1081
NspI RCATGY 1 cut(s) 774
PciI ACATGT 1 cut(s) 770
PfeI GAWTC 2 cut(s) 970, 1004
PkrI GCNGC 6 cut(s) 106, 493, 496, 625, 882, 923
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PscI ACATGT 1 cut(s) 770
PshBI ATTAAT 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 738
PspGI CCWGG 1 cut(s) 738
PspN4I GGNNCC 2 cut(s) 692, 981
PspPI GGNCC 3 cut(s) 435, 800, 824
PstI CTGCAG 1 cut(s) 1012
PstNI CAGNNNCTG 2 cut(s) 687, 1016
PsuI RGATCY 1 cut(s) 1013
RsaI GTAC 5 cut(s) 221, 317, 754, 775, 809
RsaNI GTAC 5 cut(s) 220, 316, 753, 774, 808
RseI CAYNNNNRTG 2 cut(s) 507, 791
SalI GTCGAC 1 cut(s) 677
SaqAI TTAA 5 cut(s) 18, 50, 239, 336, 374
SatI GCNGC 6 cut(s) 105, 492, 495, 624, 881, 922
Sau3AI GATC 1 cut(s) 1013
Sau96I GGNCC 3 cut(s) 435, 800, 824
SchI GAGTC 1 cut(s) 90
ScrFI CCNGG 2 cut(s) 281, 740
SfcI CTRYAG 2 cut(s) 1008, 1017
SinI GGWCC 1 cut(s) 435
SmiMI CAYNNNNRTG 2 cut(s) 507, 791
Sse9I AATT 5 cut(s) 214, 332, 573, 630, 1026
SsiI CCGC 3 cut(s) 105, 905, 921
SspI AATATT 1 cut(s) 715
SspMI CTAG 2 cut(s) 899, 1114
StyD4I CCNGG 2 cut(s) 279, 738
StyI CCWWGG 1 cut(s) 552
TaaI ACNGT 5 cut(s) 163, 730, 748, 1081, 1103
TaiI ACGT 2 cut(s) 245, 321
TaqI TCGA 1 cut(s) 678
TasI AATT 5 cut(s) 214, 332, 573, 630, 1026
TatI WGTACW 2 cut(s) 219, 773
TauI GCSGC 2 cut(s) 107, 924
TfiI GAWTC 2 cut(s) 970, 1004
Tru1I TTAA 5 cut(s) 18, 50, 239, 336, 374
Tru9I TTAA 5 cut(s) 18, 50, 239, 336, 374
TseFI GTSAC 2 cut(s) 207, 1081
TseI GCWGC 4 cut(s) 491, 494, 623, 880
Tsp45I GTSAC 2 cut(s) 207, 1081
TspDTI ATGAA 1 cut(s) 1085
VpaK11BI GGWCC 1 cut(s) 435
VspI ATTAAT 1 cut(s) 374
XapI RAATTY 2 cut(s) 214, 332
XceI RCATGY 1 cut(s) 774
XmiI GTMKAC 1 cut(s) 678
XspI CTAG 2 cut(s) 899, 1114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.