Prupe.7G042100_v2.0.a1

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000337
Physical Location & Seq
Reverse (-)
7797535 .. 7798912
1378 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G042100.1

Sequence Viewer

Length: 618 bp
ATGTCCTTATCATCATACTACCTATATATTAGGTACTTATTTTTTAGGAAAACATCATCAATAGTTCTCGGTAAAGTTAAAATTATTGGAATAGTTATGGGCATAGGAGGAGCTATGGTGTTCAGTTTCTACAAAGGCAAAGAGATAAACATGTGGTCAACACATGTTGATCTTCTCCGTACTCATGGGGAGCCATACAAGGCAGCACACAAAAGGCCTCAAAGTCTTTTGTGGGGATGCATGCTATCATTGGGTGGTTGCGTCGCCGTCTCATATGCATTATGGTTTATAGTTCAGGCGTCAATTCAATATGTAGTTTTAGCCTACTGCGTGGAGAGGGACGGGAAGCAATGGAAATTGGTACTTACGGCTTCATATTTGGGAATCATGATCTCAGGACTTGCTGTGACCCTAATGACATGGGCCTGCCTACTTGTGACGCTTGCACTTGCAGGCTCTTTCCTCCTTGATGAGAAGTTACATACAGGAAATATACTGGGACTGCTAATTGTGGCTGGACTACACGCCATATTGTGGGCTAATAGTAAAGATAAATCTGATTCTCAACCCACATCCATTGAGGAGATGCCAATTCACACAATTATTGCACAGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

206

Amino Acids

22.67

Weight (kDa)

9.14

Isoelectric Point (pI)

34.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 534
AcyI GRCGYC 1 cut(s) 299
AfaI GTAC 3 cut(s) 35, 181, 363
AfiI CCNNNNNNNGG 1 cut(s) 534
AflIII ACRYGT 2 cut(s) 150, 163
AgsI TTSAA 1 cut(s) 308
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
Alw26I GTCTC 1 cut(s) 274
AoxI GGCC 3 cut(s) 215, 423, 612
ApeKI GCWGC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 423
BbvI GCAGC 1 cut(s) 215
BceAI ACGGC 2 cut(s) 251, 384
BcoDI GTCTC 1 cut(s) 274
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 423
BmiI GGNNCC 1 cut(s) 192
BmrI ACTGGG 1 cut(s) 506
BmsI GCATC 2 cut(s) 227, 576
BmuI ACTGGG 1 cut(s) 506
BsaHI GRCGYC 1 cut(s) 299
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 1 cut(s) 534
Bse1I ACTGG 1 cut(s) 501
Bse3DI GCAATG 1 cut(s) 356
BseGI GGATG 2 cut(s) 242, 572
BseLI CCNNNNNNNGG 1 cut(s) 534
BseMI GCAATG 1 cut(s) 356
BseMII CTCAG 1 cut(s) 408
BseNI ACTGG 1 cut(s) 501
BseRI GAGGAG 2 cut(s) 123, 596
BseXI GCAGC 1 cut(s) 215
BshFI GGCC 3 cut(s) 217, 425, 614
BslFI GGGAC 2 cut(s) 353, 513
BslI CCNNNNNNNGG 1 cut(s) 534
BsmAI GTCTC 1 cut(s) 274
BsmBI CGTCTC 1 cut(s) 274
BsmFI GGGAC 2 cut(s) 353, 513
BsnI GGCC 3 cut(s) 217, 425, 614
Bsp143I GATC 2 cut(s) 169, 390
BspANI GGCC 3 cut(s) 217, 425, 614
BspCNI CTCAG 1 cut(s) 407
BspHI TCATGA 1 cut(s) 387
BspLI GGNNCC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 356
BsrI ACTGG 1 cut(s) 501
BssMI GATC 2 cut(s) 169, 390
BssNI GRCGYC 1 cut(s) 299
BstACI GRCGYC 1 cut(s) 299
BstC8I GCNNGC 4 cut(s) 242, 427, 444, 454
BstDEI CTNAG 1 cut(s) 394
BstF5I GGATG 2 cut(s) 242, 572
BstKTI GATC 2 cut(s) 172, 393
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 2 cut(s) 169, 390
BstNSI RCATGY 3 cut(s) 154, 167, 244
BstV1I GCAGC 1 cut(s) 215
BsuRI GGCC 3 cut(s) 217, 425, 614
BtsCI GGATG 2 cut(s) 242, 572
Cac8I GCNNGC 4 cut(s) 242, 427, 444, 454
CciI TCATGA 1 cut(s) 387
Cfr13I GGNCC 1 cut(s) 423
CseI GACGC 3 cut(s) 250, 288, 448
Csp6I GTAC 3 cut(s) 34, 180, 362
CspCI CAANNNNNGTGG 2 cut(s) 559, 594
CviAII CATG 6 cut(s) 151, 164, 185, 241, 388, 420
CviQI GTAC 3 cut(s) 34, 180, 362
DdeI CTNAG 1 cut(s) 394
DpnI GATC 2 cut(s) 171, 392
DpnII GATC 2 cut(s) 169, 390
Eco147I AGGCCT 2 cut(s) 217, 614
EcoT22I ATGCAT 2 cut(s) 242, 280
Esp3I CGTCTC 1 cut(s) 274
FaeI CATG 6 cut(s) 154, 167, 188, 244, 391, 423
FaqI GGGAC 2 cut(s) 353, 513
FatI CATG 6 cut(s) 150, 163, 184, 240, 387, 419
FauNDI CATATG 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 2 cut(s) 249, 559
Fsp4HI GCNGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 204
HaeIII GGCC 3 cut(s) 217, 425, 614
HgaI GACGC 3 cut(s) 250, 288, 448
Hin1I GRCGYC 1 cut(s) 299
Hin1II CATG 6 cut(s) 154, 167, 188, 244, 391, 423
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
HinfI GANTC 2 cut(s) 384, 560
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 1 cut(s) 559
Hpy188III TCNNGA 2 cut(s) 388, 396
Hpy8I GTNNAC 1 cut(s) 159
Hpy99I CGWCG 1 cut(s) 266
HpyCH4V TGCA 5 cut(s) 240, 278, 446, 452, 608
HpyF3I CTNAG 1 cut(s) 394
Hsp92I GRCGYC 1 cut(s) 299
Hsp92II CATG 6 cut(s) 154, 167, 188, 244, 391, 423
Kzo9I GATC 2 cut(s) 169, 390
LmnI GCTCC 2 cut(s) 110, 190
LpnPI CCDG 8 cut(s) 281, 381, 438, 439, 471, 482, 501, 596
Lsp1109I GCAGC 1 cut(s) 215
LweI GCATC 2 cut(s) 227, 576
MaeIII GTNAC 3 cut(s) 406, 436, 477
MalI GATC 2 cut(s) 171, 392
MboI GATC 2 cut(s) 169, 390
MboII GAAGA 1 cut(s) 164
MluCI AATT 6 cut(s) 81, 303, 356, 507, 591, 600
MnlI CCTC 5 cut(s) 101, 228, 330, 473, 574
Mph1103I ATGCAT 2 cut(s) 242, 280
MseI TTAA 1 cut(s) 78
NdeI CATATG 1 cut(s) 274
NdeII GATC 2 cut(s) 169, 390
NlaIII CATG 6 cut(s) 154, 167, 188, 244, 391, 423
NlaIV GGNNCC 1 cut(s) 192
NmuCI GTSAC 2 cut(s) 406, 436
NsiI ATGCAT 2 cut(s) 242, 280
NspI RCATGY 3 cut(s) 154, 167, 244
PaeI GCATGC 1 cut(s) 244
PagI TCATGA 1 cut(s) 387
PceI AGGCCT 2 cut(s) 217, 614
PciI ACATGT 2 cut(s) 150, 163
PfeI GAWTC 2 cut(s) 384, 560
PflMI CCANNNNNTGG 1 cut(s) 534
PkrI GCNGC 1 cut(s) 205
PscI ACATGT 2 cut(s) 150, 163
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 1 cut(s) 423
RsaI GTAC 3 cut(s) 35, 181, 363
RsaNI GTAC 3 cut(s) 34, 180, 362
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 2 cut(s) 169, 390
Sau96I GGNCC 1 cut(s) 423
SetI ASST 3 cut(s) 24, 35, 115
SfaNI GCATC 2 cut(s) 227, 576
SphI GCATGC 1 cut(s) 244
Sse9I AATT 6 cut(s) 81, 303, 356, 507, 591, 600
SseBI AGGCCT 2 cut(s) 217, 614
StuI AGGCCT 2 cut(s) 217, 614
TasI AATT 6 cut(s) 81, 303, 356, 507, 591, 600
TfiI GAWTC 2 cut(s) 384, 560
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TseFI GTSAC 2 cut(s) 406, 436
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 2 cut(s) 406, 436
TspDTI ATGAA 1 cut(s) 363
TspGWI ACGGA 1 cut(s) 167
Van91I CCANNNNNTGG 1 cut(s) 534
XceI RCATGY 3 cut(s) 154, 167, 244
Zsp2I ATGCAT 2 cut(s) 242, 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.