Prupe.1G561300_v2.0.a1

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000337
Physical Location & Seq
Forward (+)
45834331 .. 45837622
3292 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G561300.1

Sequence Viewer

Length: 1035 bp
ATGAGAGAGAAGCACATTTTCTGTAGCAGTAGCCTAGTAGAGGGGTTGAAGCCAGTGATGATGATGTTGCTGGTTCAGGCGGCATATACAGGGATGAATATATTTTACAAGATGGCAACAGAAGTTGGAATGAATTTGACTGTCCTTGTTGTCTATAAGAACATGTTTTCTGCGGCCCTTATGGTTCCTGTTGCTCTTATAATTGAATGGAAGAGCAGGCCGAAACTTACATTAGTTATACTATTTCAAGCTTTTATCTCCGGATTATTGGGACATGAAATGACAAAATTTAATGTTAAAGTTGCTCTAGTCGACTGTTTGTATATATATTTCAAGGCAACAATATCACAAAATTTTTACGTACAGAGCTTAGCCTTAACATCAACGACATCTGCTACGGCCATCACTAAACTTGTTCCAGCCATCACCTTCGTTATAGCAATATGTTTCAGGTTGGAGAGGTTGGCACTTGGAACGCATGCAGGGAGGGCAAAGGTTGTGGGGACACTTGTGGGAATAGGAGGGACAATGGTCTTCACGTTTTACAAAGGGAAAGAAATTGCCATCTGGTCAAAACATGTCAACCTTTTACATAAATATACCCAGCAAAACAGCCACGTGGCGTCATCACATAGAAACACTGGCAGTCAATTGTTGGGCTCCTTATTGGCACTCGGATCTAGCACATCCTTTGCATTGTGGTTGGTATTTCAGGCAAAGATGAGTAAGACATACCCTAGCCAATGCCATTACTCAAACACCGCTCTGATGGGGAGGGATTGGAGCCAATGGAAGTTGGGTTGGGACATCAAACTTCTTACTGCTGTATATGCGGGGGTCGTGACCACCGGACTTGTATTTACTGTAATTGCATGGTGTGTACAGATGCGGGGCCCATTGTTTGTGTCGATTTTTAACCCACTTTGCCTTTTGCTGGTAGCCCTTTCTGGGTCTTTGTTGCTGCATGAAAAGTTATACCTCGGAAGCATATTAGGAGGAATGCTAATTGTGTGTGGGTTATACATGGTGCTGTGG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

345

Amino Acids

38.14

Weight (kDa)

9.65

Isoelectric Point (pI)

32.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 200
AccBSI CCGCTC 1 cut(s) 764
AccI GTMKAC 1 cut(s) 312
AccIII TCCGGA 1 cut(s) 260
AciI CCGC 5 cut(s) 80, 173, 762, 833, 889
AclWI GGATC 1 cut(s) 685
AcoI YGGCCR 1 cut(s) 399
AcsI RAATTY 3 cut(s) 133, 287, 352
AcvI CACGTG 1 cut(s) 619
AcyI GRCGYC 1 cut(s) 623
AfaI GTAC 2 cut(s) 363, 882
AfiI CCNNNNNNNGG 3 cut(s) 40, 934, 948
AflIII ACRYGT 2 cut(s) 162, 577
AgsI TTSAA 4 cut(s) 49, 206, 248, 334
AluBI AGCT 2 cut(s) 251, 369
AluI AGCT 2 cut(s) 251, 369
AlwI GGATC 1 cut(s) 685
Aor13HI TCCGGA 1 cut(s) 260
AoxI GGCC 4 cut(s) 174, 218, 399, 892
ApaI GGGCCC 1 cut(s) 896
ApeKI GCWGC 1 cut(s) 961
ApoI RAATTY 3 cut(s) 133, 287, 352
AspS9I GGNCC 3 cut(s) 175, 892, 893
AsuHPI GGTGA 1 cut(s) 418
BaeGI GKGCMC 1 cut(s) 896
BanII GRGCYC 2 cut(s) 662, 896
BbrPI CACGTG 1 cut(s) 619
BbsI GAAGAC 1 cut(s) 526
BbvI GCAGC 1 cut(s) 948
BccI CCATC 5 cut(s) 106, 410, 431, 572, 763
BceAI ACGGC 1 cut(s) 414
BfaI CTAG 4 cut(s) 35, 308, 681, 738
BfmI CTRYAG 1 cut(s) 22
BisI GCNGC 3 cut(s) 81, 174, 962
BlpI GCTNAGC 1 cut(s) 370
BlsI GCNGC 3 cut(s) 82, 175, 963
BmgT120I GGNCC 3 cut(s) 175, 892, 893
BmiI GGNNCC 5 cut(s) 186, 661, 785, 893, 894
BmsI GCATC 1 cut(s) 876
BoxI GACNNNNGTC 1 cut(s) 530
BpiI GAAGAC 1 cut(s) 526
Bpu1102I GCTNAGC 1 cut(s) 370
BsaAI YACGTR 2 cut(s) 361, 619
BsaHI GRCGYC 1 cut(s) 623
BsaJI CCNNGG 1 cut(s) 979
BsaWI WCCGGW 2 cut(s) 260, 848
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 934, 948
Bse1I ACTGG 2 cut(s) 53, 646
BseAI TCCGGA 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 979
BseGI GGATG 2 cut(s) 99, 686
BseLI CCNNNNNNNGG 3 cut(s) 40, 934, 948
BseNI ACTGG 2 cut(s) 53, 646
BseSI GKGCMC 1 cut(s) 896
BseXI GCAGC 1 cut(s) 948
BseYI CCCAGC 1 cut(s) 603
BshFI GGCC 4 cut(s) 176, 220, 401, 894
BsiSI CCGG 2 cut(s) 261, 849
BslFI GGGAC 4 cut(s) 285, 517, 538, 818
BslI CCNNNNNNNGG 3 cut(s) 40, 934, 948
BsmFI GGGAC 4 cut(s) 285, 517, 538, 818
BsmI GAATGC 1 cut(s) 1005
BsnI GGCC 4 cut(s) 176, 220, 401, 894
Bsp120I GGGCCC 1 cut(s) 892
Bsp1286I GDGCHC 2 cut(s) 662, 896
Bsp13I TCCGGA 1 cut(s) 260
Bsp1407I TGTACA 1 cut(s) 880
Bsp143I GATC 1 cut(s) 677
Bsp1720I GCTNAGC 1 cut(s) 370
BspACI CCGC 5 cut(s) 80, 173, 762, 833, 889
BspANI GGCC 4 cut(s) 176, 220, 401, 894
BspEI TCCGGA 1 cut(s) 260
BspLI GGNNCC 5 cut(s) 186, 661, 785, 893, 894
BspPI GGATC 1 cut(s) 685
BspQI GCTCTTC 1 cut(s) 206
BsrBI CCGCTC 1 cut(s) 764
BsrGI TGTACA 1 cut(s) 880
BsrI ACTGG 2 cut(s) 53, 646
BssECI CCNNGG 1 cut(s) 979
BssMI GATC 1 cut(s) 677
BssNI GRCGYC 1 cut(s) 623
Bst4CI ACNGT 3 cut(s) 142, 317, 865
Bst6I CTCTTC 1 cut(s) 206
BstACI GRCGYC 1 cut(s) 623
BstAUI TGTACA 1 cut(s) 880
BstBAI YACGTR 2 cut(s) 361, 619
BstC8I GCNNGC 2 cut(s) 218, 480
BstDEI CTNAG 1 cut(s) 370
BstENI CCTNNNNNAGG 1 cut(s) 38
BstF5I GGATG 2 cut(s) 99, 686
BstKTI GATC 1 cut(s) 680
BstMBI GATC 1 cut(s) 677
BstMWI GCNNNNNNNGC 2 cut(s) 488, 830
BstNSI RCATGY 3 cut(s) 166, 482, 581
BstPAI GACNNNNGTC 1 cut(s) 530
BstSFI CTRYAG 1 cut(s) 22
BstSLI GKGCMC 1 cut(s) 896
BstSNI TACGTA 1 cut(s) 361
BstV1I GCAGC 1 cut(s) 948
BstV2I GAAGAC 1 cut(s) 526
BstX2I RGATCY 1 cut(s) 677
BstYI RGATCY 1 cut(s) 677
BsuRI GGCC 4 cut(s) 176, 220, 401, 894
BtsCI GGATG 2 cut(s) 99, 686
BtsIMutI CAGTG 2 cut(s) 60, 639
Cac8I GCNNGC 2 cut(s) 218, 480
Cfr13I GGNCC 3 cut(s) 175, 892, 893
CseI GACGC 1 cut(s) 612
Csp6I GTAC 2 cut(s) 362, 881
CspCI CAANNNNNGTGG 4 cut(s) 480, 515, 835, 870
CviAII CATG 7 cut(s) 163, 275, 479, 578, 873, 965, 1024
CviQI GTAC 2 cut(s) 362, 881
DdeI CTNAG 1 cut(s) 370
DpnI GATC 1 cut(s) 679
DpnII GATC 1 cut(s) 677
EaeI YGGCCR 1 cut(s) 399
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco105I TACGTA 1 cut(s) 361
Eco24I GRGCYC 2 cut(s) 662, 896
Eco72I CACGTG 1 cut(s) 619
EcoNI CCTNNNNNAGG 1 cut(s) 38
EcoO109I RGGNCCY 1 cut(s) 892
EcoT38I GRGCYC 2 cut(s) 662, 896
FaeI CATG 7 cut(s) 166, 278, 482, 581, 876, 968, 1027
FaqI GGGAC 4 cut(s) 285, 517, 538, 818
FatI CATG 7 cut(s) 162, 274, 478, 577, 872, 964, 1023
FauI CCCGC 2 cut(s) 826, 882
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 3 cut(s) 81, 174, 962
FokI GGATG 2 cut(s) 106, 673
FriOI GRGCYC 2 cut(s) 662, 896
Fsp4HI GCNGC 3 cut(s) 81, 174, 962
FspBI CTAG 4 cut(s) 35, 308, 681, 738
GluI GCNGC 3 cut(s) 81, 174, 962
GsaI CCCAGC 1 cut(s) 607
HaeIII GGCC 4 cut(s) 176, 220, 401, 894
HapII CCGG 2 cut(s) 261, 849
HgaI GACGC 1 cut(s) 612
Hin1I GRCGYC 1 cut(s) 623
Hin1II CATG 7 cut(s) 166, 278, 482, 581, 876, 968, 1027
HincII GTYRAC 2 cut(s) 313, 583
HindII GTYRAC 2 cut(s) 313, 583
HindIII AAGCTT 1 cut(s) 249
HpaII CCGG 2 cut(s) 261, 849
HphI GGTGA 1 cut(s) 418
Hpy166II GTNNAC 3 cut(s) 313, 583, 881
Hpy188I TCNGA 3 cut(s) 677, 768, 983
Hpy188III TCNNGA 2 cut(s) 261, 841
Hpy8I GTNNAC 3 cut(s) 313, 583, 881
HpyAV CCTTC 1 cut(s) 439
HpyCH4III ACNGT 3 cut(s) 142, 317, 865
HpyCH4IV ACGT 3 cut(s) 360, 539, 618
HpyCH4V TGCA 4 cut(s) 482, 695, 872, 964
HpyF10VI GCNNNNNNNGC 2 cut(s) 488, 830
HpyF3I CTNAG 1 cut(s) 370
HpySE526I ACGT 3 cut(s) 360, 539, 618
Hsp92I GRCGYC 1 cut(s) 623
Hsp92II CATG 7 cut(s) 166, 278, 482, 581, 876, 968, 1027
Kpn2I TCCGGA 1 cut(s) 260
Kzo9I GATC 1 cut(s) 677
LguI GCTCTTC 1 cut(s) 206
LmnI GCTCC 2 cut(s) 665, 783
Lsp1109I GCAGC 1 cut(s) 948
LweI GCATC 1 cut(s) 876
MaeI CTAG 4 cut(s) 35, 308, 681, 738
MaeII ACGT 3 cut(s) 360, 539, 618
MaeIII GTNAC 1 cut(s) 841
MalI GATC 1 cut(s) 679
MbiI CCGCTC 1 cut(s) 764
MboI GATC 1 cut(s) 677
MboII GAAGA 2 cut(s) 223, 526
MfeI CAATTG 1 cut(s) 650
MflI RGATCY 1 cut(s) 677
MhlI GDGCHC 2 cut(s) 662, 896
MluCI AATT 8 cut(s) 133, 201, 287, 352, 558, 650, 867, 1005
MmeI TCCRAC 2 cut(s) 106, 435
MnlI CCTC 7 cut(s) 34, 453, 480, 515, 768, 989, 989
MroI TCCGGA 1 cut(s) 260
MseI TTAA 4 cut(s) 291, 297, 377, 915
MspI CCGG 2 cut(s) 261, 849
MunI CAATTG 1 cut(s) 650
Mva1269I GAATGC 1 cut(s) 1005
MwoI GCNNNNNNNGC 2 cut(s) 488, 830
NdeII GATC 1 cut(s) 677
NlaIII CATG 7 cut(s) 166, 278, 482, 581, 876, 968, 1027
NlaIV GGNNCC 5 cut(s) 186, 661, 785, 893, 894
NmuCI GTSAC 1 cut(s) 841
NspI RCATGY 3 cut(s) 166, 482, 581
PaeI GCATGC 1 cut(s) 482
PciI ACATGT 2 cut(s) 162, 577
PciSI GCTCTTC 1 cut(s) 206
PctI GAATGC 1 cut(s) 1005
PkrI GCNGC 3 cut(s) 82, 175, 963
PmaCI CACGTG 1 cut(s) 619
PmlI CACGTG 1 cut(s) 619
Ppu21I YACGTR 2 cut(s) 361, 619
PscI ACATGT 2 cut(s) 162, 577
PshAI GACNNNNGTC 1 cut(s) 530
PsiI TTATAA 1 cut(s) 200
PspCI CACGTG 1 cut(s) 619
PspFI CCCAGC 1 cut(s) 603
PspN4I GGNNCC 5 cut(s) 186, 661, 785, 893, 894
PspOMI GGGCCC 1 cut(s) 892
PspPI GGNCC 3 cut(s) 175, 892, 893
PsuI RGATCY 1 cut(s) 677
RsaI GTAC 2 cut(s) 363, 882
RsaNI GTAC 2 cut(s) 362, 881
SalI GTCGAC 1 cut(s) 311
SapI GCTCTTC 1 cut(s) 206
SaqAI TTAA 4 cut(s) 291, 297, 377, 915
SatI GCNGC 3 cut(s) 81, 174, 962
Sau3AI GATC 1 cut(s) 677
Sau96I GGNCC 3 cut(s) 175, 892, 893
SduI GDGCHC 2 cut(s) 662, 896
SfaNI GCATC 1 cut(s) 876
SfcI CTRYAG 1 cut(s) 22
SnaBI TACGTA 1 cut(s) 361
SphI GCATGC 1 cut(s) 482
Sse9I AATT 8 cut(s) 133, 201, 287, 352, 558, 650, 867, 1005
SsiI CCGC 5 cut(s) 80, 173, 762, 833, 889
SspMI CTAG 4 cut(s) 35, 308, 681, 738
TaaI ACNGT 3 cut(s) 142, 317, 865
TaiI ACGT 3 cut(s) 363, 542, 621
TaqI TCGA 2 cut(s) 312, 908
TasI AATT 8 cut(s) 133, 201, 287, 352, 558, 650, 867, 1005
TatI WGTACW 1 cut(s) 880
TauI GCSGC 2 cut(s) 83, 176
Tru1I TTAA 4 cut(s) 291, 297, 377, 915
Tru9I TTAA 4 cut(s) 291, 297, 377, 915
TscAI CASTG 2 cut(s) 60, 646
TseFI GTSAC 1 cut(s) 841
TseI GCWGC 1 cut(s) 961
Tsp45I GTSAC 1 cut(s) 841
TspDTI ATGAA 4 cut(s) 110, 146, 291, 981
TspRI CASTG 2 cut(s) 60, 646
XagI CCTNNNNNAGG 1 cut(s) 38
XapI RAATTY 3 cut(s) 133, 287, 352
XceI RCATGY 3 cut(s) 166, 482, 581
XmiI GTMKAC 1 cut(s) 312
XspI CTAG 4 cut(s) 35, 308, 681, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.