Rw7G031030

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
44167801 .. 44169781
1981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G031030.1

Sequence Viewer

Length: 1179 bp
ATGGGGCAGCAGGGTGGTATTGAGATTTCTAGCAGTCCTAGTAGTGTAGTAGATGGCTTAATGAAGCCGGTGATATCGATGGTGATCGTTCAAATTTCATATGCAGCAATGAATATATTTTGCAAACTTGCAGCAAACGCCGGAATGAATCTCAATATTCTCGTTGCCTACCGTCTCATGAACAGCAGGCCCAAACTCACCCTATTTGTACTCTTTCAAGCTTTTCTCTGCGGTTTGTTTGGGGGAACATTGTCACAAAATCTATTCGTAGAGGCACTGGTCTTGACATCTTCGACATTTGTTGCAGCCAGTGCAAATCTGATTCCGGCGGTCACCTTCATCATGGCCATCTGTTTCAGGTTGGAGAAGTTGACACTAGGAAGCCATGCAGGGAAGGCAAAGCTTGTGGGGACAGTGATGGGTATCGGTGGTGCTATGATCTTTACCTTCGTCAAAGGACCAGAGTTCTCCATCTGGTCAACTCACATTGACCTTCTTCGAGGTCACCAGGCGGCGGCACCATCACCGTCAACGTCCTCCTCCCACAGAAGCACCGGTAGTTACTTGCTGGGCTGCTTCTTGGCTCTCGGATGCACCGTTTCCTTTGCAATGTGGCTCATACTTCAGGCAAAAATGAGCAAGAGATATCCATGCCATTACTCGAGTACGGCTCTAATGTCGGTTATGGGATCTATTCAGTCGGTAGTTTTTGCACTCTGCGTGGAGAGGGATTGGAGCCAGTGGAAATTGGGTTGGAACATCAAGCTTCTTGCAGCTGCATATTCGGGAATTGTGACTTCGGGGATGGCGGTGGTTCTTGTCTCGTGGTGTGTACGCAAGAGAGGTCCATTGTTCGTGTCAATATTCACTCCGCTCTGCTTGGTGATTGTGGCCATTGCTAGTTCTTTGTTGCTCAATGAAAAGTTAAGCCTAGGAAGCGTATTAGGAGGGATTGTAATTGTATTGGGGCTATATATGGTGCTCTGGGGAAAGAGCAAGGAGATGAAGACAATTGATAATGTGAACAGTGATCAAGAACAACCAGCCTCAGCAGCAGCACTAAGATCTTCAACGAGACTCCAAGATTCCCAATTCATTGAAATTTTTGCAACTCAAGCACCGGACACTAATATCTTCGGTGACAATAACAGCAACACAAATGTTGTGTCTAGTAGTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

392

Amino Acids

41.97

Weight (kDa)

9.23

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 190 - 328 5.5e-14 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 517
AccBSI CCGCTC 1 cut(s) 874
AciI CCGC 6 cut(s) 231, 329, 512, 515, 809, 872
AclWI GGATC 1 cut(s) 697
AcoI YGGCCR 2 cut(s) 345, 891
AcsI RAATTY 2 cut(s) 93, 1101
AcuI CTGAAG 1 cut(s) 608
AfaI GTAC 3 cut(s) 210, 667, 834
AfiI CCNNNNNNNGG 1 cut(s) 514
AgeI ACCGGT 1 cut(s) 554
AgsI TTSAA 4 cut(s) 92, 218, 1071, 1100
AjnI CCWGG 1 cut(s) 507
AluBI AGCT 4 cut(s) 221, 403, 766, 776
AluI AGCT 4 cut(s) 221, 403, 766, 776
Alw21I GWGCWC 1 cut(s) 984
Alw26I GTCTC 3 cut(s) 179, 826, 1069
AlwI GGATC 1 cut(s) 697
Ama87I CYCGRG 1 cut(s) 661
AoxI GGCC 3 cut(s) 188, 345, 891
ApeKI GCWGC 9 cut(s) 7, 104, 131, 305, 573, 773, 776, 1052, 1055
ApoI RAATTY 2 cut(s) 93, 1101
ArsI GACNNNNNNTTYG 1 cut(s) 1151
AsiGI ACCGGT 1 cut(s) 554
AspA2I CCTAGG 1 cut(s) 931
AspS9I GGNCC 3 cut(s) 189, 458, 845
AsuHPI GGTGA 8 cut(s) 82, 94, 190, 325, 497, 516, 895, 1151
AvaI CYCGRG 1 cut(s) 661
AvaII GGWCC 2 cut(s) 458, 845
AvrII CCTAGG 1 cut(s) 931
BalI TGGCCA 2 cut(s) 347, 893
BanI GGYRCC 1 cut(s) 517
BauI CACGAG 1 cut(s) 823
BbsI GAAGAC 1 cut(s) 1013
Bbv12I GWGCWC 1 cut(s) 984
BbvCI CCTCAGC 1 cut(s) 1048
BbvI GCAGC 9 cut(s) 19, 116, 143, 317, 560, 763, 785, 1064, 1067
BccI CCATC 7 cut(s) 47, 73, 356, 412, 479, 529, 799
BceAI ACGGC 1 cut(s) 684
BciT130I CCWGG 1 cut(s) 509
BclI TGATCA 1 cut(s) 1030
BcoDI GTCTC 3 cut(s) 179, 826, 1069
BfaI CTAG 6 cut(s) 30, 39, 377, 900, 932, 1170
BglII AGATCT 1 cut(s) 1064
BlnI CCTAGG 1 cut(s) 931
Bme1390I CCNGG 1 cut(s) 509
Bme18I GGWCC 2 cut(s) 458, 845
BmeT110I CYCGRG 1 cut(s) 661
BmgT120I GGNCC 3 cut(s) 189, 458, 845
BmiI GGNNCC 2 cut(s) 519, 737
BmrFI CCNGG 1 cut(s) 509
BmsI GCATC 1 cut(s) 581
BpiI GAAGAC 1 cut(s) 1013
BplI GAGNNNNNCTC 2 cut(s) 655, 687
Bpu10I CCTNAGC 1 cut(s) 1048
BpuEI CTTGAG 1 cut(s) 1098
Bsa29I ATCGAT 1 cut(s) 77
BsaBI GATNNNNATC 2 cut(s) 83, 422
BsaJI CCNNGG 1 cut(s) 931
BsaWI WCCGGW 2 cut(s) 554, 1120
BsaXI ACNNNNNCTCC 2 cut(s) 939, 969
Bsc4I CCNNNNNNNGG 1 cut(s) 514
Bse118I RCCGGY 2 cut(s) 67, 554
Bse1I ACTGG 3 cut(s) 282, 309, 739
Bse3DI GCAATG 3 cut(s) 114, 615, 894
Bse8I GATNNNNATC 2 cut(s) 83, 422
BseBI CCWGG 1 cut(s) 509
BseCI ATCGAT 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 931
BseGI GGATG 2 cut(s) 596, 810
BseJI GATNNNNATC 2 cut(s) 83, 422
BseLI CCNNNNNNNGG 1 cut(s) 514
BseMI GCAATG 3 cut(s) 114, 615, 894
BseMII CTCAG 1 cut(s) 1062
BseNI ACTGG 3 cut(s) 282, 309, 739
BseRI GAGGAG 1 cut(s) 529
BseXI GCAGC 9 cut(s) 19, 116, 143, 317, 560, 763, 785, 1064, 1067
BseYI CCCAGC 1 cut(s) 568
BshFI GGCC 3 cut(s) 190, 347, 893
BshNI GGYRCC 1 cut(s) 517
BshTI ACCGGT 1 cut(s) 554
BshVI ATCGAT 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 984
BsiHKCI CYCGRG 1 cut(s) 661
BsiSI CCGG 5 cut(s) 68, 141, 326, 555, 1121
BslFI GGGAC 1 cut(s) 424
BslI CCNNNNNNNGG 1 cut(s) 514
BsmAI GTCTC 3 cut(s) 179, 826, 1069
BsmBI CGTCTC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 424
BsnI GGCC 3 cut(s) 190, 347, 893
BsoBI CYCGRG 1 cut(s) 661
Bsp1286I GDGCHC 1 cut(s) 984
Bsp143I GATC 5 cut(s) 84, 438, 689, 1030, 1064
BspACI CCGC 6 cut(s) 231, 329, 512, 515, 809, 872
BspANI GGCC 3 cut(s) 190, 347, 893
BspCNI CTCAG 1 cut(s) 1061
BspDI ATCGAT 1 cut(s) 77
BspHI TCATGA 1 cut(s) 177
BspLI GGNNCC 2 cut(s) 519, 737
BspPI GGATC 1 cut(s) 697
BspT107I GGYRCC 1 cut(s) 517
BsrBI CCGCTC 1 cut(s) 874
BsrDI GCAATG 3 cut(s) 114, 615, 894
BsrFI RCCGGY 2 cut(s) 67, 554
BsrI ACTGG 3 cut(s) 282, 309, 739
BssAI RCCGGY 2 cut(s) 67, 554
BssECI CCNNGG 1 cut(s) 931
BssMI GATC 5 cut(s) 84, 438, 689, 1030, 1064
BssSI CACGAG 1 cut(s) 823
BssT1I CCWWGG 1 cut(s) 931
Bst2BI CACGAG 1 cut(s) 823
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 5 cut(s) 173, 415, 528, 598, 1028
BstAPI GCANNNNNTGC 1 cut(s) 311
BstC8I GCNNGC 1 cut(s) 188
BstDEI CTNAG 2 cut(s) 1048, 1061
BstEII GGTNACC 2 cut(s) 331, 503
BstF5I GGATG 2 cut(s) 596, 810
BstKTI GATC 5 cut(s) 87, 441, 692, 1033, 1067
BstMAI GTCTC 3 cut(s) 179, 826, 1069
BstMBI GATC 5 cut(s) 84, 438, 689, 1030, 1064
BstMWI GCNNNNNNNGC 6 cut(s) 137, 311, 395, 936, 1052, 1115
BstNI CCWGG 1 cut(s) 509
BstPI GGTNACC 2 cut(s) 331, 503
BstSCI CCNGG 1 cut(s) 507
BstV1I GCAGC 9 cut(s) 19, 116, 143, 317, 560, 763, 785, 1064, 1067
BstV2I GAAGAC 1 cut(s) 1013
BstX2I RGATCY 2 cut(s) 689, 1064
BstYI RGATCY 2 cut(s) 689, 1064
Bsu15I ATCGAT 1 cut(s) 77
BsuRI GGCC 3 cut(s) 190, 347, 893
BsuTUI ATCGAT 1 cut(s) 77
BtsCI GGATG 2 cut(s) 596, 810
BtsIMutI CAGTG 5 cut(s) 275, 316, 420, 746, 1033
Cac8I GCNNGC 1 cut(s) 188
CciI TCATGA 1 cut(s) 177
Cfr10I RCCGGY 2 cut(s) 67, 554
Cfr13I GGNCC 3 cut(s) 189, 458, 845
ClaI ATCGAT 1 cut(s) 77
Csp6I GTAC 3 cut(s) 209, 666, 833
CspAI ACCGGT 1 cut(s) 554
CspCI CAANNNNNGTGG 2 cut(s) 387, 422
CviAII CATG 4 cut(s) 178, 343, 386, 651
CviQI GTAC 3 cut(s) 209, 666, 833
DdeI CTNAG 2 cut(s) 1048, 1061
DpnI GATC 5 cut(s) 86, 440, 691, 1032, 1066
DpnII GATC 5 cut(s) 84, 438, 689, 1030, 1064
EaeI YGGCCR 2 cut(s) 345, 891
Eco130I CCWWGG 1 cut(s) 931
Eco32I GATATC 2 cut(s) 75, 647
Eco47I GGWCC 2 cut(s) 458, 845
Eco57I CTGAAG 1 cut(s) 608
Eco88I CYCGRG 1 cut(s) 661
Eco91I GGTNACC 2 cut(s) 331, 503
EcoO65I GGTNACC 2 cut(s) 331, 503
EcoRII CCWGG 1 cut(s) 507
EcoRV GATATC 2 cut(s) 75, 647
EcoT14I CCWWGG 1 cut(s) 931
ErhI CCWWGG 1 cut(s) 931
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 4 cut(s) 181, 346, 389, 654
FaqI GGGAC 1 cut(s) 424
FatI CATG 4 cut(s) 177, 342, 385, 650
FauNDI CATATG 1 cut(s) 100
FbaI TGATCA 1 cut(s) 1030
FokI GGATG 2 cut(s) 603, 817
FspBI CTAG 6 cut(s) 30, 39, 377, 900, 932, 1170
GsaI CCCAGC 1 cut(s) 572
HaeIII GGCC 3 cut(s) 190, 347, 893
HapII CCGG 5 cut(s) 68, 141, 326, 555, 1121
Hin1II CATG 4 cut(s) 181, 346, 389, 654
HincII GTYRAC 3 cut(s) 372, 480, 531
HindII GTYRAC 3 cut(s) 372, 480, 531
HindIII AAGCTT 3 cut(s) 219, 401, 764
HinfI GANTC 4 cut(s) 148, 322, 1077, 1085
HpaII CCGG 5 cut(s) 68, 141, 326, 555, 1121
HphI GGTGA 8 cut(s) 82, 94, 190, 325, 497, 516, 895, 1151
Hpy166II GTNNAC 5 cut(s) 372, 480, 531, 833, 1024
Hpy188I TCNGA 2 cut(s) 321, 590
Hpy188III TCNNGA 4 cut(s) 178, 283, 786, 1034
Hpy8I GTNNAC 5 cut(s) 372, 480, 531, 833, 1024
HpyAV CCTTC 4 cut(s) 346, 388, 457, 503
HpyCH4III ACNGT 5 cut(s) 173, 415, 528, 598, 1028
HpyCH4IV ACGT 1 cut(s) 533
HpyF10VI GCNNNNNNNGC 6 cut(s) 137, 311, 395, 936, 1052, 1115
HpyF3I CTNAG 2 cut(s) 1048, 1061
HpySE526I ACGT 1 cut(s) 533
Hsp92II CATG 4 cut(s) 181, 346, 389, 654
Ksp22I TGATCA 1 cut(s) 1030
Kzo9I GATC 5 cut(s) 84, 438, 689, 1030, 1064
LmnI GCTCC 1 cut(s) 735
Lsp1109I GCAGC 9 cut(s) 19, 116, 143, 317, 560, 763, 785, 1064, 1067
LweI GCATC 1 cut(s) 581
MaeI CTAG 6 cut(s) 30, 39, 377, 900, 932, 1170
MaeII ACGT 1 cut(s) 533
MaeIII GTNAC 6 cut(s) 252, 331, 503, 560, 793, 1139
MalI GATC 5 cut(s) 86, 440, 691, 1032, 1066
MbiI CCGCTC 1 cut(s) 874
MboI GATC 5 cut(s) 84, 438, 689, 1030, 1064
MboII GAAGA 5 cut(s) 282, 488, 1018, 1059, 1126
MfeI CAATTG 1 cut(s) 1011
MflI RGATCY 2 cut(s) 689, 1064
MhlI GDGCHC 1 cut(s) 984
MlsI TGGCCA 2 cut(s) 347, 893
MluCI AATT 7 cut(s) 93, 746, 789, 957, 1011, 1091, 1101
MluNI TGGCCA 2 cut(s) 347, 893
MlyI GAGTC 1 cut(s) 1071
MmeI TCCRAC 2 cut(s) 342, 734
MnlI CCTC 8 cut(s) 265, 494, 547, 550, 720, 836, 941, 1057
Mox20I TGGCCA 2 cut(s) 347, 893
MscI TGGCCA 2 cut(s) 347, 893
MseI TTAA 2 cut(s) 59, 926
Msp20I TGGCCA 2 cut(s) 347, 893
MspA1I CMGCKG 1 cut(s) 776
MspI CCGG 5 cut(s) 68, 141, 326, 555, 1121
MspR9I CCNGG 1 cut(s) 509
MunI CAATTG 1 cut(s) 1011
MvaI CCWGG 1 cut(s) 509
MwoI GCNNNNNNNGC 6 cut(s) 137, 311, 395, 936, 1052, 1115
NdeI CATATG 1 cut(s) 100
NdeII GATC 5 cut(s) 84, 438, 689, 1030, 1064
NlaIII CATG 4 cut(s) 181, 346, 389, 654
NlaIV GGNNCC 2 cut(s) 519, 737
NmuCI GTSAC 5 cut(s) 252, 331, 503, 793, 1139
PaeR7I CTCGAG 1 cut(s) 661
PagI TCATGA 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 594
PfeI GAWTC 3 cut(s) 148, 322, 1085
PinAI ACCGGT 1 cut(s) 554
PleI GAGTC 1 cut(s) 1071
PpsI GAGTC 1 cut(s) 1071
Psp6I CCWGG 1 cut(s) 507
PspEI GGTNACC 2 cut(s) 331, 503
PspFI CCCAGC 1 cut(s) 568
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 2 cut(s) 519, 737
PspPI GGNCC 3 cut(s) 189, 458, 845
PspXI VCTCGAGB 1 cut(s) 661
PsuI RGATCY 2 cut(s) 689, 1064
PvuII CAGCTG 1 cut(s) 776
RsaI GTAC 3 cut(s) 210, 667, 834
RsaNI GTAC 3 cut(s) 209, 666, 833
SaqAI TTAA 2 cut(s) 59, 926
Sau3AI GATC 5 cut(s) 84, 438, 689, 1030, 1064
Sau96I GGNCC 3 cut(s) 189, 458, 845
SchI GAGTC 1 cut(s) 1071
ScrFI CCNGG 1 cut(s) 509
SduI GDGCHC 1 cut(s) 984
SfaNI GCATC 1 cut(s) 581
Sfr274I CTCGAG 1 cut(s) 661
SinI GGWCC 2 cut(s) 458, 845
SlaI CTCGAG 1 cut(s) 661
SmlI CTYRAG 2 cut(s) 661, 1113
SmoI CTYRAG 2 cut(s) 661, 1113
Sse9I AATT 7 cut(s) 93, 746, 789, 957, 1011, 1091, 1101
SsiI CCGC 6 cut(s) 231, 329, 512, 515, 809, 872
SspI AATATT 2 cut(s) 157, 864
SspMI CTAG 6 cut(s) 30, 39, 377, 900, 932, 1170
StyD4I CCNGG 1 cut(s) 507
StyI CCWWGG 1 cut(s) 931
TaaI ACNGT 5 cut(s) 173, 415, 528, 598, 1028
TaiI ACGT 1 cut(s) 536
TaqI TCGA 4 cut(s) 77, 293, 499, 662
TasI AATT 7 cut(s) 93, 746, 789, 957, 1011, 1091, 1101
TatI WGTACW 1 cut(s) 208
TauI GCSGC 2 cut(s) 515, 518
TfiI GAWTC 3 cut(s) 148, 322, 1085
Tru1I TTAA 2 cut(s) 59, 926
Tru9I TTAA 2 cut(s) 59, 926
TscAI CASTG 5 cut(s) 282, 316, 420, 746, 1033
TseFI GTSAC 5 cut(s) 252, 331, 503, 793, 1139
TseI GCWGC 9 cut(s) 7, 104, 131, 305, 573, 773, 776, 1052, 1055
Tsp45I GTSAC 5 cut(s) 252, 331, 503, 793, 1139
TspDTI ATGAA 9 cut(s) 77, 87, 125, 161, 194, 328, 933, 1019, 1084
TspRI CASTG 5 cut(s) 282, 316, 420, 746, 1033
VpaK11BI GGWCC 2 cut(s) 458, 845
XapI RAATTY 2 cut(s) 93, 1101
XhoI CTCGAG 1 cut(s) 661
XmaJI CCTAGG 1 cut(s) 931
XspI CTAG 6 cut(s) 30, 39, 377, 900, 932, 1170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.