Prupe.1G561400_v2.0.a1

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000337
Physical Location & Seq
Forward (+)
45839108 .. 45841529
2422 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G561400.1

Sequence Viewer

Length: 1158 bp
ATGGAAAAAATGCAGAACTATAAAGTGGCAGATGGGATGAAGCCAGTGATGGTAATGGTGCTGGTTCAGATTTTGTTTGCGGGGATGAATATCTTGTACAAACTAGTGGCTGAAGATGGCATGAATTTTACGATTCTTATTGCCTACCGTATGATGTTTGCTGCTGCTTTTATGCTTCCCTTGGCTCTCGGATTTGAAAGGGACAGCAGAACAAAACTTACATGGATGGTACTGTTTCAAGCTTTTCTCTGTGGGCTATTTGGGGGTTCACTGTCTCAAAATTTATATATCGAGAGCATAGCCTTAACATCAGCAACATATGCAGTGGCCATGTATAATCTTGTCCCTGCCATTACTTTTATTCTGGCCATATTTTTCAGAATGGAGAAGTTGGCCATAGACACAAATGCAGGGAAAGCAAAAGTTGTGGGAACAGTTATGGGGATAGGAGGGGCTATGCTCTTCACCTTCTACAAAGGCATAGAGATTAACATATGGTCTACACATTTTGATCTTCACAGCCAGCCAAATAGCCATGAGGCATCAATATCACACAAAAGTTCTGGAAGTCTTTTGTTGGGCTCCATGGTTTCTTTGGGTAGCTGTGTGTCCTATGCTATTTGGTTGATAATTCAGGGAAAACTAAACAAGAGATTCCCTTACCCTTACTCAACTACGGCTCTAATGTCCCTGATGGGATCAATTCAATCCGTAGTGTTTGCCCTCTGCGTGGAGAGGGATTGGAACCAGTGGAAGTTGGGCTGGGATATTAGACTACTTGCACTTTCTTATTCGGGAGTTCTTAACTCAGGACTCGCTGTGACCCTAATTGCATGGGTTGTAAAGAAGGGAGGGCCATTGTTGGTTGCAGTTTTTCAGCCTCTCTTGCTTGTGATGGTTGCACTTGCAGGGTCTTTGTTGCTGGATGAAAAGTTGCACCTTGGAAGCATACTGGGAGGACTGATGATTGTGAGTGGATTATACGAGGTATTGTGGGGTAAGAGTAAGGAATTGCTGCAGATGACTCAATTAGAATCCCAAACAAGTCTCAAATATGAATCCAATTCTCAACGAATCCTAGTTGTTACATCTGTTGGGGAAGATGTGAATTCTGAGAAGGAAATGGTTGAGAGCAGAAAGGAGGACGTGAAGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

386

Amino Acids

42.5

Weight (kDa)

8.56

Isoelectric Point (pI)

33.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 500
AciI CCGC 1 cut(s) 80
AclWI GGATC 1 cut(s) 706
AcoI YGGCCR 3 cut(s) 327, 366, 393
AcsI RAATTY 3 cut(s) 124, 280, 1108
AcuI CTGAAG 1 cut(s) 132
AfaI GTAC 2 cut(s) 98, 231
AfiI CCNNNNNNNGG 1 cut(s) 730
AgsI TTSAA 3 cut(s) 197, 239, 707
AhlI ACTAGT 1 cut(s) 103
AjiI CACGTC 1 cut(s) 1147
AluBI AGCT 2 cut(s) 242, 603
AluI AGCT 2 cut(s) 242, 603
Alw26I GTCTC 2 cut(s) 279, 1052
AlwI GGATC 1 cut(s) 706
AoxI GGCC 4 cut(s) 327, 366, 393, 854
ApeKI GCWGC 3 cut(s) 161, 164, 1015
ApoI RAATTY 3 cut(s) 124, 280, 1108
AspS9I GGNCC 1 cut(s) 854
AsuHPI GGTGA 1 cut(s) 457
BalI TGGCCA 3 cut(s) 329, 368, 395
BanII GRGCYC 1 cut(s) 584
BbvI GCAGC 3 cut(s) 148, 151, 1002
BccI CCATC 6 cut(s) 26, 43, 110, 220, 688, 889
BceAI ACGGC 1 cut(s) 693
BcoDI GTCTC 2 cut(s) 279, 1052
BcuI ACTAGT 1 cut(s) 103
BfaI CTAG 2 cut(s) 104, 1079
BfmI CTRYAG 1 cut(s) 1016
BisI GCNGC 3 cut(s) 162, 165, 1016
BlsI GCNGC 3 cut(s) 163, 166, 1017
BmgBI CACGTC 1 cut(s) 1147
BmgT120I GGNCC 1 cut(s) 854
BmiI GGNNCC 2 cut(s) 583, 746
BmrI ACTGGG 1 cut(s) 962
BmsI GCATC 1 cut(s) 551
BmuI ACTGGG 1 cut(s) 962
BsaBI GATNNNNATC 1 cut(s) 89
BsaJI CCNNGG 3 cut(s) 180, 585, 940
Bsc4I CCNNNNNNNGG 1 cut(s) 730
Bse1I ACTGG 3 cut(s) 44, 748, 957
Bse8I GATNNNNATC 1 cut(s) 89
BseDI CCNNGG 3 cut(s) 180, 585, 940
BseGI GGATG 4 cut(s) 42, 90, 231, 931
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 730
BseMII CTCAG 2 cut(s) 822, 1104
BseNI ACTGG 3 cut(s) 44, 748, 957
BseXI GCAGC 3 cut(s) 148, 151, 1002
BseYI CCCAGC 1 cut(s) 762
BshFI GGCC 4 cut(s) 329, 368, 395, 856
BslFI GGGAC 3 cut(s) 215, 329, 673
BslI CCNNNNNNNGG 1 cut(s) 730
BsmAI GTCTC 2 cut(s) 279, 1052
BsmFI GGGAC 3 cut(s) 215, 329, 673
BsnI GGCC 4 cut(s) 329, 368, 395, 856
Bsp1286I GDGCHC 1 cut(s) 584
Bsp1407I TGTACA 1 cut(s) 96
Bsp143I GATC 2 cut(s) 511, 698
Bsp19I CCATGG 1 cut(s) 585
BspACI CCGC 1 cut(s) 80
BspANI GGCC 4 cut(s) 329, 368, 395, 856
BspCNI CTCAG 2 cut(s) 821, 1105
BspLI GGNNCC 2 cut(s) 583, 746
BspMAI CTGCAG 1 cut(s) 1020
BspPI GGATC 1 cut(s) 706
BspQI GCTCTTC 1 cut(s) 467
BsrGI TGTACA 1 cut(s) 96
BsrI ACTGG 3 cut(s) 44, 748, 957
BssECI CCNNGG 3 cut(s) 180, 585, 940
BssMI GATC 2 cut(s) 511, 698
BssT1I CCWWGG 3 cut(s) 180, 585, 940
Bst4CI ACNGT 4 cut(s) 149, 234, 273, 436
Bst6I CTCTTC 1 cut(s) 467
BstAPI GCANNNNNTGC 1 cut(s) 320
BstAUI TGTACA 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 524
BstDEI CTNAG 3 cut(s) 808, 1113, 1155
BstDSI CCRYGG 1 cut(s) 585
BstF5I GGATG 4 cut(s) 42, 90, 231, 931
BstKTI GATC 2 cut(s) 514, 701
BstMAI GTCTC 2 cut(s) 279, 1052
BstMBI GATC 2 cut(s) 511, 698
BstMWI GCNNNNNNNGC 3 cut(s) 320, 416, 886
BstSFI CTRYAG 1 cut(s) 1016
BstV1I GCAGC 3 cut(s) 148, 151, 1002
BsuRI GGCC 4 cut(s) 329, 368, 395, 856
BtgI CCRYGG 1 cut(s) 585
BtrI CACGTC 1 cut(s) 1147
BtsCI GGATG 4 cut(s) 42, 90, 231, 931
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 4 cut(s) 51, 269, 330, 755
Cac8I GCNNGC 1 cut(s) 524
Cfr13I GGNCC 1 cut(s) 854
Csp6I GTAC 2 cut(s) 97, 230
CspCI CAANNNNNGTGG 2 cut(s) 408, 443
CviAII CATG 6 cut(s) 121, 222, 331, 536, 586, 834
CviQI GTAC 2 cut(s) 97, 230
DdeI CTNAG 3 cut(s) 808, 1113, 1155
DpnI GATC 2 cut(s) 513, 700
DpnII GATC 2 cut(s) 511, 698
EaeI YGGCCR 3 cut(s) 327, 366, 393
Eam1104I CTCTTC 1 cut(s) 467
EarI CTCTTC 1 cut(s) 467
Eco130I CCWWGG 3 cut(s) 180, 585, 940
Eco24I GRGCYC 1 cut(s) 584
Eco57I CTGAAG 1 cut(s) 132
EcoRI GAATTC 1 cut(s) 1108
EcoT14I CCWWGG 3 cut(s) 180, 585, 940
EcoT38I GRGCYC 1 cut(s) 584
ErhI CCWWGG 3 cut(s) 180, 585, 940
FaeI CATG 6 cut(s) 124, 225, 334, 539, 589, 837
FaqI GGGAC 3 cut(s) 215, 329, 673
FatI CATG 6 cut(s) 120, 221, 330, 535, 585, 833
FauI CCCGC 1 cut(s) 73
FauNDI CATATG 2 cut(s) 319, 494
FblI GTMKAC 1 cut(s) 500
Fnu4HI GCNGC 3 cut(s) 162, 165, 1016
FokI GGATG 4 cut(s) 49, 97, 238, 938
FriOI GRGCYC 1 cut(s) 584
Fsp4HI GCNGC 3 cut(s) 162, 165, 1016
FspBI CTAG 2 cut(s) 104, 1079
GluI GCNGC 3 cut(s) 162, 165, 1016
GsaI CCCAGC 1 cut(s) 766
HaeIII GGCC 4 cut(s) 329, 368, 395, 856
Hin1II CATG 6 cut(s) 124, 225, 334, 539, 589, 837
HindIII AAGCTT 1 cut(s) 240
HinfI GANTC 7 cut(s) 133, 654, 813, 1024, 1034, 1058, 1074
HphI GGTGA 1 cut(s) 457
Hpy166II GTNNAC 2 cut(s) 269, 501
Hpy188I TCNGA 4 cut(s) 69, 191, 380, 1114
Hpy188III TCNNGA 4 cut(s) 292, 564, 795, 810
Hpy8I GTNNAC 2 cut(s) 269, 501
HpyAV CCTTC 3 cut(s) 478, 841, 1111
HpyCH4III ACNGT 4 cut(s) 149, 234, 273, 436
HpyCH4IV ACGT 1 cut(s) 1146
HpyF10VI GCNNNNNNNGC 3 cut(s) 320, 416, 886
HpyF3I CTNAG 3 cut(s) 808, 1113, 1155
HpySE526I ACGT 1 cut(s) 1146
Hsp92II CATG 6 cut(s) 124, 225, 334, 539, 589, 837
Kzo9I GATC 2 cut(s) 511, 698
LguI GCTCTTC 1 cut(s) 467
LmnI GCTCC 1 cut(s) 587
Lsp1109I GCAGC 3 cut(s) 148, 151, 1002
LweI GCATC 1 cut(s) 551
MaeI CTAG 2 cut(s) 104, 1079
MaeII ACGT 1 cut(s) 1146
MaeIII GTNAC 2 cut(s) 820, 1084
MalI GATC 2 cut(s) 513, 700
MboI GATC 2 cut(s) 511, 698
MboII GAAGA 4 cut(s) 125, 454, 506, 1112
MhlI GDGCHC 1 cut(s) 584
MlsI TGGCCA 3 cut(s) 329, 368, 395
MluCI AATT 9 cut(s) 124, 280, 630, 702, 828, 1010, 1028, 1063, 1108
MluNI TGGCCA 3 cut(s) 329, 368, 395
MlyI GAGTC 2 cut(s) 807, 1018
MnlI CCTC 9 cut(s) 443, 532, 729, 734, 845, 891, 950, 979, 1135
Mox20I TGGCCA 3 cut(s) 329, 368, 395
MscI TGGCCA 3 cut(s) 329, 368, 395
MseI TTAA 3 cut(s) 305, 489, 804
Msp20I TGGCCA 3 cut(s) 329, 368, 395
MwoI GCNNNNNNNGC 3 cut(s) 320, 416, 886
NcoI CCATGG 1 cut(s) 585
NdeI CATATG 2 cut(s) 319, 494
NdeII GATC 2 cut(s) 511, 698
NlaIII CATG 6 cut(s) 124, 225, 334, 539, 589, 837
NlaIV GGNNCC 2 cut(s) 583, 746
NmuCI GTSAC 1 cut(s) 820
PciSI GCTCTTC 1 cut(s) 467
PfeI GAWTC 5 cut(s) 133, 654, 1034, 1058, 1074
PkrI GCNGC 3 cut(s) 163, 166, 1017
PleI GAGTC 2 cut(s) 807, 1018
PpsI GAGTC 2 cut(s) 807, 1018
PspFI CCCAGC 1 cut(s) 762
PspN4I GGNNCC 2 cut(s) 583, 746
PspPI GGNCC 1 cut(s) 854
PsrI GAACNNNNNNTAC 2 cut(s) 202, 234
PstI CTGCAG 1 cut(s) 1020
RsaI GTAC 2 cut(s) 98, 231
RsaNI GTAC 2 cut(s) 97, 230
SapI GCTCTTC 1 cut(s) 467
SaqAI TTAA 3 cut(s) 305, 489, 804
SatI GCNGC 3 cut(s) 162, 165, 1016
Sau3AI GATC 2 cut(s) 511, 698
Sau96I GGNCC 1 cut(s) 854
SchI GAGTC 2 cut(s) 807, 1018
SduI GDGCHC 1 cut(s) 584
SetI ASST 6 cut(s) 244, 470, 605, 942, 990, 1149
SfaNI GCATC 1 cut(s) 551
SfcI CTRYAG 1 cut(s) 1016
SpeI ACTAGT 1 cut(s) 103
Sse9I AATT 9 cut(s) 124, 280, 630, 702, 828, 1010, 1028, 1063, 1108
SsiI CCGC 1 cut(s) 80
SspMI CTAG 2 cut(s) 104, 1079
StyI CCWWGG 3 cut(s) 180, 585, 940
TaaI ACNGT 4 cut(s) 149, 234, 273, 436
TaiI ACGT 1 cut(s) 1149
TaqI TCGA 1 cut(s) 291
TasI AATT 9 cut(s) 124, 280, 630, 702, 828, 1010, 1028, 1063, 1108
TatI WGTACW 1 cut(s) 96
TfiI GAWTC 5 cut(s) 133, 654, 1034, 1058, 1074
Tru1I TTAA 3 cut(s) 305, 489, 804
Tru9I TTAA 3 cut(s) 305, 489, 804
TscAI CASTG 4 cut(s) 51, 276, 330, 755
TseFI GTSAC 1 cut(s) 820
TseI GCWGC 3 cut(s) 161, 164, 1015
Tsp45I GTSAC 1 cut(s) 820
TspDTI ATGAA 5 cut(s) 53, 101, 137, 942, 1071
TspGWI ACGGA 1 cut(s) 700
TspRI CASTG 4 cut(s) 51, 276, 330, 755
XapI RAATTY 3 cut(s) 124, 280, 1108
XcmI CCANNNNNNNNNTGG 1 cut(s) 592
XmiI GTMKAC 1 cut(s) 500
XspI CTAG 2 cut(s) 104, 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.