RchiOBHm_Chr7g0224591

EamA-like transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000337
Physical Location & Seq
Reverse (-)
46805404 .. 46807918
2515 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20111

Sequence Viewer

Length: 1164 bp
ATGCAGAATTGTAAGGCAATGGAGGGGATGAAGCCTGTTATGGTTATGGTGTTGGTTCAGAGTCTATTTGCAGGGATGAATGTATTGTACAAATTAGTGGCAAATGATGGCATAAATTTCAGGATTCTCATTGCCTACCGCATGGTGTTTGCTGCTGCCTTCATGACTCCTCTTGCTCTCGTTTTCGAAATAAGGAAAAGCTGGAGAAACCTTACATGGACTGTACTCTTTCAGTCTTTTCTAACTGGGCTATTTGGGGGAACAGTAGCACAAAATTTGTATATCGAGAGCCTAGCCAAAACATCAGCAACATATTCAGTAGCTATATTTAACCTTGTTCCAGCGATTACGTTTATCCTTTCCACTTCTTTGAGAATGGAGAAATTGGCCATTCGAACTCATGCCGGGAAAGCTAAAGTTGTCGGAACAATTTTGGGGATAGGGGGGGCTATGCTTTTCACCTTCTACAAAGGCTTTCAGATTAATATTTGGTCTACAAACATTAATCTTCTACGCCATTACGGTGACAAAAACAACCATGGTCAAGCTCCATCATCAGCAAACAAGGACTCGGGAAGTATTTTGTTAGGCTCAGGCATGGCTCTGGGTAGCTGTACATCTTTCGCTATTTGGCTTATAATCCAGGCAAAAATGAATAAGGGATATCCCTACCTATACTCGAGCACAGCTCTAATGGCCTTCATGGGATCAGTTCAATCTGTAGCTTTTTCCATTTGCATGGATAGGGATTGGAAGCAGTGGAAGTTGGGATGGAACATTCAACTTCTTGCAATGTCCTATTCGGGTATTTTCAACTCTGGAATTGCTGTGACTCTAATGGCATGGTGCGTAAAGAAGGGAGGACCAGTGTTCGTTGCAAGTTTTCAGCCTCTCTTGCTTGTGATGGTTGCAGTTGCTGGGTCTCTGCTTCTGGATGAGAAGTTGCACCTTGGAAGTGTACTAGGTGGATTGCTGGTTGTGAGTGGACTATACATGGTATTGTGGGGTAAGAGTAAGGAAATGAAGAATCAGATAACTCCATTACCGGCGACAGCAAGCCTCCAATGCCAAGATGAACACCAATCTCCTACGATCGAAGTCATTACATCATCTTCTATGGAGGACATGAACCACATCAATGACAGAAATGTGACAAATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

387

Amino Acids

42.43

Weight (kDa)

9.47

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 14 - 154 1e-12 EamA-like transporter family
EamA PF00892 197 - 334 2.7e-12 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 638
AccI GTMKAC 1 cut(s) 494
AciI CCGC 1 cut(s) 139
AclWI GGATC 1 cut(s) 715
AcoI YGGCCR 1 cut(s) 387
AcsI RAATTY 2 cut(s) 115, 274
AfaI GTAC 4 cut(s) 89, 225, 616, 960
AgsI TTSAA 3 cut(s) 716, 782, 814
AjnI CCWGG 1 cut(s) 642
AluBI AGCT 7 cut(s) 201, 323, 413, 548, 612, 689, 725
AluI AGCT 7 cut(s) 201, 323, 413, 548, 612, 689, 725
Alw21I GWGCWC 1 cut(s) 686
Alw26I GTCTC 1 cut(s) 927
AlwI GGATC 1 cut(s) 715
AlwNI CAGNNNCTG 1 cut(s) 917
Ama87I CYCGRG 2 cut(s) 571, 679
AoxI GGCC 2 cut(s) 387, 696
ApeKI GCWGC 2 cut(s) 152, 155
ApoI RAATTY 2 cut(s) 115, 274
AseI ATTAAT 2 cut(s) 483, 504
AspS9I GGNCC 1 cut(s) 863
AsuC2I CCSGG 1 cut(s) 406
AsuHPI GGTGA 2 cut(s) 451, 536
AsuII TTCGAA 2 cut(s) 186, 394
AvaI CYCGRG 2 cut(s) 571, 679
AvaII GGWCC 1 cut(s) 863
BalI TGGCCA 1 cut(s) 389
Bbv12I GWGCWC 1 cut(s) 686
BbvI GCAGC 2 cut(s) 139, 142
BccI CCATC 4 cut(s) 101, 559, 765, 898
BciT130I CCWGG 1 cut(s) 644
BcnI CCSGG 1 cut(s) 406
BcoDI GTCTC 1 cut(s) 927
BfaI CTAG 2 cut(s) 293, 962
BfmI CTRYAG 1 cut(s) 720
BisI GCNGC 2 cut(s) 153, 156
BlsI GCNGC 2 cut(s) 154, 157
Bme1390I CCNGG 2 cut(s) 406, 644
Bme18I GGWCC 1 cut(s) 863
BmeT110I CYCGRG 2 cut(s) 571, 679
BmgT120I GGNCC 1 cut(s) 863
BmrFI CCNGG 2 cut(s) 406, 644
BmrI ACTGGG 1 cut(s) 255
BmuI ACTGGG 1 cut(s) 255
BplI GAGNNNNNCTC 2 cut(s) 673, 705
BpmI CTGGAG 1 cut(s) 223
Bpu10I CCTNAGC 1 cut(s) 592
Bpu14I TTCGAA 2 cut(s) 186, 394
BpuMI CCSGG 1 cut(s) 406
BsaI GGTCTC 1 cut(s) 927
BsaJI CCNNGG 2 cut(s) 538, 949
BsaXI ACNNNNNCTCC 2 cut(s) 852, 882
Bse118I RCCGGY 1 cut(s) 1045
Bse1I ACTGG 2 cut(s) 250, 866
Bse3DI GCAATG 3 cut(s) 24, 129, 798
BseBI CCWGG 1 cut(s) 644
BseDI CCNNGG 2 cut(s) 538, 949
BseGI GGATG 4 cut(s) 33, 81, 776, 940
BseMI GCAATG 3 cut(s) 24, 129, 798
BseMII CTCAG 1 cut(s) 606
BseNI ACTGG 2 cut(s) 250, 866
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 2 cut(s) 139, 142
BseYI CCCAGC 1 cut(s) 917
Bsh1285I CGRYCG 1 cut(s) 1095
BshFI GGCC 2 cut(s) 389, 698
BsiEI CGRYCG 1 cut(s) 1095
BsiHKAI GWGCWC 1 cut(s) 686
BsiHKCI CYCGRG 2 cut(s) 571, 679
BsiSI CCGG 2 cut(s) 405, 1046
BsmAI GTCTC 1 cut(s) 927
BsnI GGCC 2 cut(s) 389, 698
Bso31I GGTCTC 1 cut(s) 927
BsoBI CYCGRG 2 cut(s) 571, 679
Bsp119I TTCGAA 2 cut(s) 186, 394
Bsp1286I GDGCHC 1 cut(s) 686
Bsp1407I TGTACA 2 cut(s) 87, 614
Bsp143I GATC 2 cut(s) 707, 1092
Bsp19I CCATGG 1 cut(s) 538
BspACI CCGC 1 cut(s) 139
BspANI GGCC 2 cut(s) 389, 698
BspCNI CTCAG 1 cut(s) 605
BspHI TCATGA 1 cut(s) 162
BspPI GGATC 1 cut(s) 715
BspT104I TTCGAA 2 cut(s) 186, 394
BspTNI GGTCTC 1 cut(s) 927
BsrDI GCAATG 3 cut(s) 24, 129, 798
BsrFI RCCGGY 1 cut(s) 1045
BsrGI TGTACA 2 cut(s) 87, 614
BsrI ACTGG 2 cut(s) 250, 866
BssAI RCCGGY 1 cut(s) 1045
BssECI CCNNGG 2 cut(s) 538, 949
BssMI GATC 2 cut(s) 707, 1092
BssT1I CCWWGG 2 cut(s) 538, 949
Bst2UI CCWGG 1 cut(s) 644
Bst4CI ACNGT 3 cut(s) 223, 265, 524
BstAUI TGTACA 2 cut(s) 87, 614
BstBI TTCGAA 2 cut(s) 186, 394
BstC8I GCNNGC 1 cut(s) 1057
BstDEI CTNAG 1 cut(s) 592
BstDSI CCRYGG 1 cut(s) 538
BstF5I GGATG 4 cut(s) 33, 81, 776, 940
BstKTI GATC 2 cut(s) 710, 1095
BstMAI GTCTC 1 cut(s) 927
BstMBI GATC 2 cut(s) 707, 1092
BstMCI CGRYCG 1 cut(s) 1095
BstMWI GCNNNNNNNGC 4 cut(s) 410, 695, 895, 1065
BstNI CCWGG 1 cut(s) 644
BstSCI CCNGG 2 cut(s) 404, 642
BstSFI CTRYAG 1 cut(s) 720
BstV1I GCAGC 2 cut(s) 139, 142
BstXI CCANNNNNNTGG 1 cut(s) 739
BsuRI GGCC 2 cut(s) 389, 698
BtgI CCRYGG 1 cut(s) 538
BtsCI GGATG 4 cut(s) 33, 81, 776, 940
BtsI GCAGTG 1 cut(s) 764
BtsIMutI CAGTG 2 cut(s) 764, 873
Cac8I GCNNGC 1 cut(s) 1057
CaiI CAGNNNCTG 1 cut(s) 917
CciI TCATGA 1 cut(s) 162
Cfr10I RCCGGY 1 cut(s) 1045
Cfr13I GGNCC 1 cut(s) 863
Csp6I GTAC 4 cut(s) 88, 224, 615, 959
CviQI GTAC 4 cut(s) 88, 224, 615, 959
DdeI CTNAG 1 cut(s) 592
DpnI GATC 2 cut(s) 709, 1094
DpnII GATC 2 cut(s) 707, 1092
EaeI YGGCCR 1 cut(s) 387
Eco130I CCWWGG 2 cut(s) 538, 949
Eco31I GGTCTC 1 cut(s) 927
Eco32I GATATC 1 cut(s) 665
Eco47I GGWCC 1 cut(s) 863
Eco88I CYCGRG 2 cut(s) 571, 679
EcoRII CCWGG 1 cut(s) 642
EcoRV GATATC 1 cut(s) 665
EcoT14I CCWWGG 2 cut(s) 538, 949
ErhI CCWWGG 2 cut(s) 538, 949
FblI GTMKAC 1 cut(s) 494
Fnu4HI GCNGC 2 cut(s) 153, 156
FokI GGATG 4 cut(s) 40, 88, 783, 947
Fsp4HI GCNGC 2 cut(s) 153, 156
FspBI CTAG 2 cut(s) 293, 962
GluI GCNGC 2 cut(s) 153, 156
GsaI CCCAGC 1 cut(s) 921
GsuI CTGGAG 1 cut(s) 223
HaeIII GGCC 2 cut(s) 389, 698
HapII CCGG 2 cut(s) 405, 1046
HinfI GANTC 6 cut(s) 61, 124, 166, 569, 832, 1027
HpaII CCGG 2 cut(s) 405, 1046
HphI GGTGA 2 cut(s) 451, 536
Hpy166II GTNNAC 3 cut(s) 495, 959, 986
Hpy188I TCNGA 4 cut(s) 60, 425, 480, 1032
Hpy188III TCNNGA 6 cut(s) 121, 163, 286, 573, 819, 932
Hpy8I GTNNAC 3 cut(s) 495, 959, 986
HpyAV CCTTC 4 cut(s) 169, 472, 709, 850
HpyCH4III ACNGT 3 cut(s) 223, 265, 524
HpyCH4IV ACGT 1 cut(s) 350
HpyCH4V TGCA 7 cut(s) 4, 71, 738, 791, 878, 911, 946
HpyF10VI GCNNNNNNNGC 4 cut(s) 410, 695, 895, 1065
HpyF3I CTNAG 1 cut(s) 592
HpySE526I ACGT 1 cut(s) 350
Kzo9I GATC 2 cut(s) 707, 1092
LmnI GCTCC 1 cut(s) 553
Lsp1109I GCAGC 2 cut(s) 139, 142
MaeI CTAG 2 cut(s) 293, 962
MaeII ACGT 1 cut(s) 350
MaeIII GTNAC 3 cut(s) 524, 829, 1150
MalI GATC 2 cut(s) 709, 1094
MboI GATC 2 cut(s) 707, 1092
MboII GAAGA 3 cut(s) 500, 1036, 1104
MhlI GDGCHC 1 cut(s) 686
MlsI TGGCCA 1 cut(s) 389
MluCI AATT 8 cut(s) 7, 92, 115, 274, 383, 429, 822, 1159
MluNI TGGCCA 1 cut(s) 389
MlyI GAGTC 4 cut(s) 70, 160, 563, 826
MmeI TCCRAC 1 cut(s) 403
MnlI CCTC 6 cut(s) 16, 180, 854, 900, 1070, 1114
Mox20I TGGCCA 1 cut(s) 389
MscI TGGCCA 1 cut(s) 389
MseI TTAA 3 cut(s) 330, 483, 504
MslI CAYNNNNRTG 3 cut(s) 522, 737, 1137
Msp20I TGGCCA 1 cut(s) 389
MspI CCGG 2 cut(s) 405, 1046
MspR9I CCNGG 2 cut(s) 406, 644
MvaI CCWGG 1 cut(s) 644
MwoI GCNNNNNNNGC 4 cut(s) 410, 695, 895, 1065
NciI CCSGG 1 cut(s) 406
NcoI CCATGG 1 cut(s) 538
NdeII GATC 2 cut(s) 707, 1092
NmuCI GTSAC 3 cut(s) 524, 829, 1150
NspV TTCGAA 2 cut(s) 186, 394
PaeR7I CTCGAG 1 cut(s) 679
PagI TCATGA 1 cut(s) 162
PfeI GAWTC 2 cut(s) 124, 1027
PkrI GCNGC 2 cut(s) 154, 157
Ple19I CGATCG 1 cut(s) 1095
PleI GAGTC 4 cut(s) 69, 160, 563, 826
PpsI GAGTC 4 cut(s) 69, 160, 563, 826
PshBI ATTAAT 2 cut(s) 483, 504
PsiI TTATAA 1 cut(s) 638
Psp6I CCWGG 1 cut(s) 642
PspFI CCCAGC 1 cut(s) 917
PspGI CCWGG 1 cut(s) 642
PspPI GGNCC 1 cut(s) 863
PspXI VCTCGAGB 1 cut(s) 679
PstNI CAGNNNCTG 1 cut(s) 917
PvuI CGATCG 1 cut(s) 1095
RsaI GTAC 4 cut(s) 89, 225, 616, 960
RsaNI GTAC 4 cut(s) 88, 224, 615, 959
RseI CAYNNNNRTG 3 cut(s) 522, 737, 1137
SaqAI TTAA 3 cut(s) 330, 483, 504
SatI GCNGC 2 cut(s) 153, 156
Sau3AI GATC 2 cut(s) 707, 1092
Sau96I GGNCC 1 cut(s) 863
SchI GAGTC 4 cut(s) 70, 160, 563, 826
ScrFI CCNGG 2 cut(s) 406, 644
SduI GDGCHC 1 cut(s) 686
SfcI CTRYAG 1 cut(s) 720
Sfr274I CTCGAG 1 cut(s) 679
SfuI TTCGAA 2 cut(s) 186, 394
SinI GGWCC 1 cut(s) 863
SlaI CTCGAG 1 cut(s) 679
SmiMI CAYNNNNRTG 3 cut(s) 522, 737, 1137
SmlI CTYRAG 1 cut(s) 679
SmoI CTYRAG 1 cut(s) 679
Sse9I AATT 8 cut(s) 7, 92, 115, 274, 383, 429, 822, 1159
SsiI CCGC 1 cut(s) 139
SspI AATATT 1 cut(s) 487
SspMI CTAG 2 cut(s) 293, 962
StyD4I CCNGG 2 cut(s) 404, 642
StyI CCWWGG 2 cut(s) 538, 949
TaaI ACNGT 3 cut(s) 223, 265, 524
TaiI ACGT 1 cut(s) 353
TaqI TCGA 5 cut(s) 186, 285, 394, 680, 1095
TasI AATT 8 cut(s) 7, 92, 115, 274, 383, 429, 822, 1159
TatI WGTACW 4 cut(s) 87, 223, 614, 958
TfiI GAWTC 2 cut(s) 124, 1027
Tru1I TTAA 3 cut(s) 330, 483, 504
Tru9I TTAA 3 cut(s) 330, 483, 504
TscAI CASTG 2 cut(s) 764, 873
TseFI GTSAC 3 cut(s) 524, 829, 1150
TseI GCWGC 2 cut(s) 152, 155
Tsp45I GTSAC 3 cut(s) 524, 829, 1150
TspDTI ATGAA 8 cut(s) 44, 92, 151, 668, 691, 1037, 1089, 1142
TspRI CASTG 2 cut(s) 764, 873
VpaK11BI GGWCC 1 cut(s) 863
VspI ATTAAT 2 cut(s) 483, 504
XapI RAATTY 2 cut(s) 115, 274
XhoI CTCGAG 1 cut(s) 679
XmiI GTMKAC 1 cut(s) 494
XspI CTAG 2 cut(s) 293, 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.