Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000337

Physical Location & Seq

Genomic Coordinates Forward (+)

51879119 .. 51882171

Gene Structure 3053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1417300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGACGATGGGCACTGGCCAGATATGTAATGTTTTTCATGGGTTGAAGCCAGTGTTGTTAATGGTGGTGATTCAATTTGCACTTGCAGGAGTTAATATTCTCTATAAACTGGCCGCTCACGATGGAATGAATTTAAGGATTCTTGTTGCATATCGCTTCATTTTTGGAACCGCTTTCCTTCTTCCTATTGCTCTTTTCATCGAAAGGAAGAGCAGGCCAAAGCTCACCTGGATGGTACTTTTGCAAGGATTTTTGTCTGGCTTGTTCGGTGGATCGTTAGCACAAAATTTGTACATTGAAAGCTTAGCCTTAACATCGGCAATATTTGGTTCTGCCATAGCCCAGCTCATCCCAGCCATTACTTTCATCTTGGCCGTCATCTTCAGGCTGGAGAAGTTGAATTTGAAAAACCTAGCAGGGAAGGCAAAGGTGATGGGAACATTAATGGGAATAGGTGGAGCAATGCTTATGACCTTTTATAAAGGTATGGAAATCAACATATGGTCCACGCATGTTGACCTTATACATGCTAATCGGCAACAACACAGCCACTTGGCATCAACACCGCATACAGACACTGGTAATCAAATATTGGGTTGTCTACTGGCCTTCGCAAGCTGTTTGTGCTACGCTATATGGCTCATTATCCAGGTGATTCTCTTAATTACCAAAGTACTTATAAACCCACCATTTTATGTTAGCTTTAGTTTTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

239

Amino Acids

26.23

Weight (kDa)

9.73

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	17 - 158	6.3e-16	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25270 AT1G68170 AT1G68170
fragaria_vesca	FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica	MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica	Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis	pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis	RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata	RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora	Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii	Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa	Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha	Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana	Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	480, 680
AccBSI	CCGCTC	1 cut(s)	116
AccI	GTMKAC	1 cut(s)	601
AciI	CCGC	3 cut(s)	114, 171, 566
AclWI	GGATC	1 cut(s)	280
AcoI	YGGCCR	3 cut(s)	16, 111, 372
AcsI	RAATTY	3 cut(s)	130, 286, 400
AcuI	CTGAAG	1 cut(s)	367
AfaI	GTAC	3 cut(s)	237, 293, 675
AgsI	TTSAA	5 cut(s)	46, 74, 299, 400, 406
AjnI	CCWGG	2 cut(s)	227, 648
AluBI	AGCT	5 cut(s)	223, 303, 346, 618, 702
AluI	AGCT	5 cut(s)	223, 303, 346, 618, 702
AlwI	GGATC	1 cut(s)	280
AlwNI	CAGNNNCTG	1 cut(s)	578
AoxI	GGCC	5 cut(s)	16, 111, 215, 372, 606
ApoI	RAATTY	3 cut(s)	130, 286, 400
AseI	ATTAAT	1 cut(s)	443
AspS9I	GGNCC	1 cut(s)	504
AsuHPI	GGTGA	4 cut(s)	79, 217, 442, 664
AvaII	GGWCC	1 cut(s)	504
BaeGI	GKGCMC	1 cut(s)	14
BalI	TGGCCA	1 cut(s)	18
BccI	CCATC	3 cut(s)	116, 226, 427
BceAI	ACGGC	1 cut(s)	359
BciT130I	CCWGG	2 cut(s)	229, 650
BfaI	CTAG	1 cut(s)	413
BisI	GCNGC	1 cut(s)	114
BlpI	GCTNAGC	1 cut(s)	304
BlsI	GCNGC	1 cut(s)	115
BmcAI	AGTACT	1 cut(s)	675
Bme1390I	CCNGG	2 cut(s)	229, 650
Bme18I	GGWCC	1 cut(s)	504
BmgT120I	GGNCC	1 cut(s)	504
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	2 cut(s)	229, 650
BmsI	GCATC	1 cut(s)	566
BpmI	CTGGAG	1 cut(s)	410
Bpu1102I	GCTNAGC	1 cut(s)	304
Bse1I	ACTGG	5 cut(s)	19, 50, 114, 583, 609
Bse3DI	GCAATG	1 cut(s)	468
BseBI	CCWGG	2 cut(s)	229, 650
BseGI	GGATG	2 cut(s)	237, 348
BseMI	GCAATG	1 cut(s)	468
BseNI	ACTGG	5 cut(s)	19, 50, 114, 583, 609
BseSI	GKGCMC	1 cut(s)	14
BseYI	CCCAGC	2 cut(s)	342, 352
BshFI	GGCC	5 cut(s)	18, 113, 217, 374, 608
BsnI	GGCC	5 cut(s)	18, 113, 217, 374, 608
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp1407I	TGTACA	1 cut(s)	291
Bsp143I	GATC	1 cut(s)	272
Bsp1720I	GCTNAGC	1 cut(s)	304
BspACI	CCGC	3 cut(s)	114, 171, 566
BspANI	GGCC	5 cut(s)	18, 113, 217, 374, 608
BspLI	GGNNCC	1 cut(s)	169
BspPI	GGATC	1 cut(s)	280
BspQI	GCTCTTC	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	468
BsrGI	TGTACA	1 cut(s)	291
BsrI	ACTGG	5 cut(s)	19, 50, 114, 583, 609
BssMI	GATC	1 cut(s)	272
Bst2UI	CCWGG	2 cut(s)	229, 650
Bst6I	CTCTTC	1 cut(s)	203
BstAUI	TGTACA	1 cut(s)	291
BstC8I	GCNNGC	2 cut(s)	215, 616
BstDEI	CTNAG	1 cut(s)	304
BstF5I	GGATG	2 cut(s)	237, 348
BstKTI	GATC	1 cut(s)	275
BstMBI	GATC	1 cut(s)	272
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 624
BstNI	CCWGG	2 cut(s)	229, 650
BstNSI	RCATGY	2 cut(s)	515, 530
BstSCI	CCNGG	2 cut(s)	227, 648
BstSLI	GKGCMC	1 cut(s)	14
BsuRI	GGCC	5 cut(s)	18, 113, 217, 374, 608
BtsCI	GGATG	2 cut(s)	237, 348
BtsIMutI	CAGTG	3 cut(s)	12, 57, 576
Cac8I	GCNNGC	2 cut(s)	215, 616
CaiI	CAGNNNCTG	1 cut(s)	578
Cfr13I	GGNCC	1 cut(s)	504
Csp6I	GTAC	3 cut(s)	236, 292, 674
CspCI	CAANNNNNGTGG	2 cut(s)	496, 531
CviAII	CATG	3 cut(s)	38, 512, 527
CviQI	GTAC	3 cut(s)	236, 292, 674
DdeI	CTNAG	1 cut(s)	304
DpnI	GATC	1 cut(s)	274
DpnII	GATC	1 cut(s)	272
EaeI	YGGCCR	3 cut(s)	16, 111, 372
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	504
Eco57I	CTGAAG	1 cut(s)	367
EcoRII	CCWGG	2 cut(s)	227, 648
FaeI	CATG	3 cut(s)	41, 515, 530
FatI	CATG	3 cut(s)	37, 511, 526
FauNDI	CATATG	1 cut(s)	500
FblI	GTMKAC	1 cut(s)	601
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	2 cut(s)	244, 335
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	1 cut(s)	413
GluI	GCNGC	1 cut(s)	114
GsaI	CCCAGC	2 cut(s)	346, 356
GsuI	CTGGAG	1 cut(s)	410
HaeIII	GGCC	5 cut(s)	18, 113, 217, 374, 608
Hin1II	CATG	3 cut(s)	41, 515, 530
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	1 cut(s)	301
HinfI	GANTC	3 cut(s)	70, 139, 655
HphI	GGTGA	4 cut(s)	79, 217, 442, 664
Hpy166II	GTNNAC	3 cut(s)	507, 517, 602
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	3 cut(s)	507, 517, 602
HpyAV	CCTTC	3 cut(s)	188, 415, 619
HpyCH4V	TGCA	4 cut(s)	80, 86, 149, 244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 624
HpyF3I	CTNAG	1 cut(s)	304
Hsp92II	CATG	3 cut(s)	41, 515, 530
Kzo9I	GATC	1 cut(s)	272
LguI	GCTCTTC	1 cut(s)	203
LmnI	GCTCC	1 cut(s)	458
LweI	GCATC	1 cut(s)	566
MaeI	CTAG	1 cut(s)	413
MalI	GATC	1 cut(s)	274
MbiI	CCGCTC	1 cut(s)	116
MboI	GATC	1 cut(s)	272
MboII	GAAGA	3 cut(s)	173, 220, 373
MhlI	GDGCHC	1 cut(s)	14
MlsI	TGGCCA	1 cut(s)	18
MluCI	AATT	5 cut(s)	74, 130, 286, 400, 663
MluNI	TGGCCA	1 cut(s)	18
Mox20I	TGGCCA	1 cut(s)	18
MscI	TGGCCA	1 cut(s)	18
MseI	TTAA	6 cut(s)	59, 93, 134, 311, 443, 662
MslI	CAYNNNNRTG	1 cut(s)	230
Msp20I	TGGCCA	1 cut(s)	18
MspR9I	CCNGG	2 cut(s)	229, 650
MvaI	CCWGG	2 cut(s)	229, 650
MwoI	GCNNNNNNNGC	2 cut(s)	422, 624
NdeI	CATATG	1 cut(s)	500
NdeII	GATC	1 cut(s)	272
NlaIII	CATG	3 cut(s)	41, 515, 530
NlaIV	GGNNCC	1 cut(s)	169
NspI	RCATGY	2 cut(s)	515, 530
PciSI	GCTCTTC	1 cut(s)	203
PfeI	GAWTC	3 cut(s)	70, 139, 655
PkrI	GCNGC	1 cut(s)	115
PshBI	ATTAAT	1 cut(s)	443
PsiI	TTATAA	2 cut(s)	480, 680
Psp6I	CCWGG	2 cut(s)	227, 648
PspFI	CCCAGC	2 cut(s)	342, 352
PspGI	CCWGG	2 cut(s)	227, 648
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	504
PstNI	CAGNNNCTG	1 cut(s)	578
RsaI	GTAC	3 cut(s)	237, 293, 675
RsaNI	GTAC	3 cut(s)	236, 292, 674
RseI	CAYNNNNRTG	1 cut(s)	230
SapI	GCTCTTC	1 cut(s)	203
SaqAI	TTAA	6 cut(s)	59, 93, 134, 311, 443, 662
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	1 cut(s)	272
Sau96I	GGNCC	1 cut(s)	504
ScaI	AGTACT	1 cut(s)	675
ScrFI	CCNGG	2 cut(s)	229, 650
SduI	GDGCHC	1 cut(s)	14
SfaNI	GCATC	1 cut(s)	566
SinI	GGWCC	1 cut(s)	504
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	5 cut(s)	74, 130, 286, 400, 663
SsiI	CCGC	3 cut(s)	114, 171, 566
SspI	AATATT	3 cut(s)	97, 324, 591
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	2 cut(s)	227, 648
TaqI	TCGA	1 cut(s)	201
TasI	AATT	5 cut(s)	74, 130, 286, 400, 663
TatI	WGTACW	2 cut(s)	291, 673
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	3 cut(s)	70, 139, 655
Tru1I	TTAA	6 cut(s)	59, 93, 134, 311, 443, 662
Tru9I	TTAA	6 cut(s)	59, 93, 134, 311, 443, 662
TscAI	CASTG	3 cut(s)	19, 57, 583
TspDTI	ATGAA	5 cut(s)	26, 143, 148, 187, 355
TspRI	CASTG	3 cut(s)	19, 57, 583
VpaK11BI	GGWCC	1 cut(s)	504
VspI	ATTAAT	1 cut(s)	443
XapI	RAATTY	3 cut(s)	130, 286, 400
XceI	RCATGY	2 cut(s)	515, 530
XcmI	CCANNNNNNNNNTGG	1 cut(s)	225
XmiI	GTMKAC	1 cut(s)	601
XspI	CTAG	1 cut(s)	413
ZrmI	AGTACT	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.