Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000337

Physical Location & Seq

Genomic Coordinates Forward (+)

49012740 .. 49016976

Gene Structure 4237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG377200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGGTGGTAGTTGTTTTAATGCTTTGCATGGGTTGAAGCCATTGATGTTAATGCTGGTGGTTCAGTTTACATCTGCTGGAGTCAACTTGTTCTACAAACTGGCCGCTAATGATGGAATGGACATCAGGATTATTATTGCCTATCGCTTCAGTTTTGCCACCGTTTTCCTTGCTCCTATTGCTCTCTTCGTTGAAAGAAAGAGCAGGCCAAAGCTCACTCGGGTGGTACTCCTCCAAGCATTTTTGTCTGGCTTGCTTGGGGGAGCATTGTCACAAAATTTGTACATTGCAAGTTTAGCGTTAACGTCTGCAACATTTGCTCTCGCCATAAGTCAACTCATCCCGGCCATAACTTTTGTTTTGGCCATCTCCTTTGGGTTGGAGAGATTGAATTTAAGGAGCGTAGGAGGGAAGGCAAAGGTGTTGGGAACATTAATGGGAATAGGTGGAGCAATGCTTATGACCTTTTACAAAGGTCTGGAAATCCACTTATGGACCACCCATGTTGACCTTTTGCATAGTCATCAGCAACAACCACACTTGGAGGCAGCAGCTTCGCATGAGTATGCTCATCGTCTGTTAGGTTGTCTTCTAGCTCTGGCCAGCTCGTTGGGTTACGCCTTCTGGCTAATTATTCAGGCTAAGATGGGTGAGAAATACCCTAGTTTTTATTCAAGCGCAGCTCTAATTTCACTTATGGGGTCAATCCAGTCCCTTGTTTTTGCCCTCTGCGTCAACAGGGACTGGAACCATTGGAAGTTGGGTTGGAATATTAGACTTCTAACAGTCTTATACCTGGGGACTGTGGGTACTGGAGTAAGTCTGACATGTACTACTCTTTGCATAAGCATGAGAGGGCCTTTGTACGCGTCAGTTTTTGGGCCTCTGGTTCTTGTTCTTGTTGCCCTCGTTGGCTCTTTGGTGTTGGACGAGAAGCTGCACCTCGGAAGTGTGCTAGGAGCGGTTCTAATCGTTGGCGGCTTATACGCTGTTCTGTGGGGAAAGAGCAAAGACATAAAGAAGGTGAATCAATCGGTGCCAACAACAAGCTATGAGGAGGAATCTGCAGGATCTGTAGTTGAAATTGTTTCAATGCCTCGGGATAATAATAAAGGCAATAACTACATGAATGAGACCGTCACAAATAGTCAACATGATCGCATAGAAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

390

Amino Acids

42.31

Weight (kDa)

9.2

Isoelectric Point (pI)

32.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	15 - 155	9.1e-14	EamA-like transporter family
EamA	PF00892	194 - 332	2.1e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25270 AT1G68170 AT1G68170
fragaria_vesca	FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica	MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica	Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis	pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis	RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata	RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora	Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii	Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa	Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha	Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana	Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1036
AccBSI	CCGCTC	1 cut(s)	962
AccII	CGCG	1 cut(s)	869
AciI	CCGC	3 cut(s)	105, 962, 978
AclWI	GGATC	1 cut(s)	1078
AcoI	YGGCCR	4 cut(s)	102, 345, 363, 600
AcsI	RAATTY	2 cut(s)	277, 391
AcuI	CTGAAG	1 cut(s)	133
AfaI	GTAC	5 cut(s)	228, 284, 811, 832, 866
AflIII	ACRYGT	2 cut(s)	827, 867
AgsI	TTSAA	6 cut(s)	37, 194, 391, 675, 1082, 1092
AjnI	CCWGG	1 cut(s)	795
AleI	CACNNNNGTG	1 cut(s)	221
AluBI	AGCT	7 cut(s)	214, 554, 596, 606, 683, 937, 1050
AluI	AGCT	7 cut(s)	214, 554, 596, 606, 683, 937, 1050
Alw26I	GTCTC	1 cut(s)	1127
AlwI	GGATC	1 cut(s)	1078
AlwNI	CAGNNNCTG	2 cut(s)	744, 1073
Ama87I	CYCGRG	2 cut(s)	219, 1098
AoxI	GGCC	7 cut(s)	102, 206, 345, 363, 600, 857, 881
ApeKI	GCWGC	4 cut(s)	548, 551, 680, 937
ApoI	RAATTY	2 cut(s)	277, 391
AseI	ATTAAT	1 cut(s)	434
AspLEI	GCGC	1 cut(s)	680
AspS9I	GGNCC	3 cut(s)	495, 857, 881
AsuC2I	CCSGG	1 cut(s)	344
AsuHPI	GGTGA	2 cut(s)	662, 1036
AvaI	CYCGRG	2 cut(s)	219, 1098
AvaII	GGWCC	1 cut(s)	495
BaeI	ACNNNNGTAYC	2 cut(s)	801, 834
BalI	TGGCCA	2 cut(s)	365, 602
BanI	GGYRCC	1 cut(s)	1036
BbsI	GAAGAC	1 cut(s)	581
BbvI	GCAGC	4 cut(s)	560, 563, 692, 924
BccI	CCATC	3 cut(s)	107, 374, 640
BcgI	CGANNNNNNTGC	2 cut(s)	537, 571
BciT130I	CCWGG	1 cut(s)	797
BcnI	CCSGG	1 cut(s)	344
BcoDI	GTCTC	1 cut(s)	1127
BfaI	CTAG	4 cut(s)	593, 663, 956, 1171
BfmI	CTRYAG	2 cut(s)	1065, 1074
BisI	GCNGC	6 cut(s)	105, 549, 552, 681, 938, 979
BlsI	GCNGC	6 cut(s)	106, 550, 553, 682, 939, 980
Bme1390I	CCNGG	2 cut(s)	344, 797
Bme18I	GGWCC	1 cut(s)	495
BmeT110I	CYCGRG	2 cut(s)	219, 1098
BmgT120I	GGNCC	3 cut(s)	495, 857, 881
BmiI	GGNNCC	2 cut(s)	749, 1038
BmrFI	CCNGG	2 cut(s)	344, 797
BpiI	GAAGAC	1 cut(s)	581
BpmI	CTGGAG	2 cut(s)	99, 834
BpuMI	CCSGG	1 cut(s)	344
BsaI	GGTCTC	1 cut(s)	1127
BsaJI	CCNNGG	3 cut(s)	796, 943, 1097
Bse1I	ACTGG	4 cut(s)	105, 709, 749, 817
Bse3DI	GCAATG	2 cut(s)	285, 459
BseBI	CCWGG	1 cut(s)	797
BseDI	CCNNGG	3 cut(s)	796, 943, 1097
BseGI	GGATG	1 cut(s)	339
BseMI	GCAATG	2 cut(s)	285, 459
BseNI	ACTGG	4 cut(s)	105, 709, 749, 817
BseRI	GAGGAG	2 cut(s)	221, 1070
BseXI	GCAGC	4 cut(s)	560, 563, 692, 924
BsgI	GTGCAG	1 cut(s)	923
Bsh1236I	CGCG	1 cut(s)	869
BshFI	GGCC	7 cut(s)	104, 208, 347, 365, 602, 859, 883
BshNI	GGYRCC	1 cut(s)	1036
BsiHKCI	CYCGRG	2 cut(s)	219, 1098
BsiSI	CCGG	1 cut(s)	344
BslFI	GGGAC	3 cut(s)	697, 755, 814
BsmAI	GTCTC	1 cut(s)	1127
BsmFI	GGGAC	3 cut(s)	697, 755, 814
BsnI	GGCC	7 cut(s)	104, 208, 347, 365, 602, 859, 883
Bso31I	GGTCTC	1 cut(s)	1127
BsoBI	CYCGRG	2 cut(s)	219, 1098
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	2 cut(s)	1070, 1156
BspACI	CCGC	3 cut(s)	105, 962, 978
BspANI	GGCC	7 cut(s)	104, 208, 347, 365, 602, 859, 883
BspFNI	CGCG	1 cut(s)	869
BspLI	GGNNCC	2 cut(s)	749, 1038
BspMAI	CTGCAG	1 cut(s)	1069
BspPI	GGATC	1 cut(s)	1078
BspT107I	GGYRCC	1 cut(s)	1036
BspTNI	GGTCTC	1 cut(s)	1127
BsrBI	CCGCTC	1 cut(s)	962
BsrDI	GCAATG	2 cut(s)	285, 459
BsrGI	TGTACA	1 cut(s)	282
BsrI	ACTGG	4 cut(s)	105, 709, 749, 817
BssECI	CCNNGG	3 cut(s)	796, 943, 1097
BssMI	GATC	2 cut(s)	1070, 1156
Bst2UI	CCWGG	1 cut(s)	797
Bst4CI	ACNGT	4 cut(s)	163, 787, 805, 1138
Bst6I	CTCTTC	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstAUI	TGTACA	1 cut(s)	282
BstC8I	GCNNGC	3 cut(s)	206, 254, 604
BstDEI	CTNAG	1 cut(s)	642
BstF5I	GGATG	1 cut(s)	339
BstFNI	CGCG	1 cut(s)	869
BstHHI	GCGC	1 cut(s)	680
BstKTI	GATC	2 cut(s)	1073, 1159
BstMAI	GTCTC	1 cut(s)	1127
BstMBI	GATC	2 cut(s)	1070, 1156
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 296, 317
BstNI	CCWGG	1 cut(s)	797
BstNSI	RCATGY	1 cut(s)	831
BstSCI	CCNGG	2 cut(s)	342, 795
BstSFI	CTRYAG	2 cut(s)	1065, 1074
BstUI	CGCG	1 cut(s)	869
BstV1I	GCAGC	4 cut(s)	560, 563, 692, 924
BstV2I	GAAGAC	1 cut(s)	581
BstX2I	RGATCY	1 cut(s)	1070
BstXI	CCANNNNNNTGG	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	1070
BsuRI	GGCC	7 cut(s)	104, 208, 347, 365, 602, 859, 883
BtsCI	GGATG	1 cut(s)	339
Cac8I	GCNNGC	3 cut(s)	206, 254, 604
CaiI	CAGNNNCTG	2 cut(s)	744, 1073
CfoI	GCGC	1 cut(s)	680
Cfr13I	GGNCC	3 cut(s)	495, 857, 881
CseI	GACGC	2 cut(s)	721, 858
Csp6I	GTAC	5 cut(s)	227, 283, 810, 831, 865
CspCI	CAANNNNNGTGG	2 cut(s)	487, 522
CviAII	CATG	7 cut(s)	29, 503, 560, 828, 850, 1126, 1154
CviQI	GTAC	5 cut(s)	227, 283, 810, 831, 865
DdeI	CTNAG	1 cut(s)	642
DpnI	GATC	2 cut(s)	1072, 1158
DpnII	GATC	2 cut(s)	1070, 1156
EaeI	YGGCCR	4 cut(s)	102, 345, 363, 600
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco31I	GGTCTC	1 cut(s)	1127
Eco47I	GGWCC	1 cut(s)	495
Eco57I	CTGAAG	1 cut(s)	133
Eco88I	CYCGRG	2 cut(s)	219, 1098
EcoO109I	RGGNCCY	1 cut(s)	857
EcoRII	CCWGG	1 cut(s)	795
FaeI	CATG	7 cut(s)	32, 506, 563, 831, 853, 1129, 1157
FaqI	GGGAC	3 cut(s)	697, 755, 814
FatI	CATG	7 cut(s)	28, 502, 559, 827, 849, 1125, 1153
Fnu4HI	GCNGC	6 cut(s)	105, 549, 552, 681, 938, 979
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	6 cut(s)	105, 549, 552, 681, 938, 979
FspBI	CTAG	4 cut(s)	593, 663, 956, 1171
GlaI	GCGC	1 cut(s)	679
GluI	GCNGC	6 cut(s)	105, 549, 552, 681, 938, 979
GsuI	CTGGAG	2 cut(s)	99, 834
HaeIII	GGCC	7 cut(s)	104, 208, 347, 365, 602, 859, 883
HapII	CCGG	1 cut(s)	344
HgaI	GACGC	2 cut(s)	721, 858
HhaI	GCGC	1 cut(s)	680
Hin1II	CATG	7 cut(s)	32, 506, 563, 831, 853, 1129, 1157
Hin6I	GCGC	1 cut(s)	678
HinP1I	GCGC	1 cut(s)	678
HincII	GTYRAC	6 cut(s)	85, 303, 335, 508, 736, 1151
HindII	GTYRAC	6 cut(s)	85, 303, 335, 508, 736, 1151
HinfI	GANTC	3 cut(s)	81, 1027, 1061
HpaI	GTTAAC	1 cut(s)	303
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	2 cut(s)	662, 1036
Hpy166II	GTNNAC	7 cut(s)	69, 85, 303, 335, 508, 736, 1151
Hpy188I	TCNGA	2 cut(s)	825, 947
Hpy188III	TCNNGA	3 cut(s)	127, 479, 1100
Hpy8I	GTNNAC	7 cut(s)	69, 85, 303, 335, 508, 736, 1151
HpyAV	CCTTC	3 cut(s)	406, 631, 1015
HpyCH4III	ACNGT	4 cut(s)	163, 787, 805, 1138
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	7 cut(s)	28, 290, 311, 517, 843, 940, 1067
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 296, 317
HpyF3I	CTNAG	1 cut(s)	642
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	7 cut(s)	32, 506, 563, 831, 853, 1129, 1157
HspAI	GCGC	1 cut(s)	678
KspAI	GTTAAC	1 cut(s)	303
Kzo9I	GATC	2 cut(s)	1070, 1156
LmnI	GCTCC	5 cut(s)	178, 263, 399, 449, 959
Lsp1109I	GCAGC	4 cut(s)	560, 563, 692, 924
MaeI	CTAG	4 cut(s)	593, 663, 956, 1171
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	3 cut(s)	270, 614, 1138
MalI	GATC	2 cut(s)	1072, 1158
MbiI	CCGCTC	1 cut(s)	962
MboI	GATC	2 cut(s)	1070, 1156
MboII	GAAGA	2 cut(s)	178, 581
MflI	RGATCY	1 cut(s)	1070
MlsI	TGGCCA	2 cut(s)	365, 602
MluCI	AATT	5 cut(s)	277, 391, 630, 687, 1083
MluI	ACGCGT	1 cut(s)	867
MluNI	TGGCCA	2 cut(s)	365, 602
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	3 cut(s)	360, 746, 906
Mox20I	TGGCCA	2 cut(s)	365, 602
MscI	TGGCCA	2 cut(s)	365, 602
MseI	TTAA	5 cut(s)	18, 50, 302, 395, 434
MslI	CAYNNNNRTG	3 cut(s)	221, 564, 848
Msp20I	TGGCCA	2 cut(s)	365, 602
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	2 cut(s)	344, 797
MvaI	CCWGG	1 cut(s)	797
MvnI	CGCG	1 cut(s)	869
MwoI	GCNNNNNNNGC	3 cut(s)	179, 296, 317
NciI	CCSGG	1 cut(s)	344
NdeII	GATC	2 cut(s)	1070, 1156
NlaIII	CATG	7 cut(s)	32, 506, 563, 831, 853, 1129, 1157
NlaIV	GGNNCC	2 cut(s)	749, 1038
NmuCI	GTSAC	2 cut(s)	270, 1138
NspI	RCATGY	1 cut(s)	831
OliI	CACNNNNGTG	1 cut(s)	221
PciI	ACATGT	1 cut(s)	827
PfeI	GAWTC	2 cut(s)	1027, 1061
PkrI	GCNGC	6 cut(s)	106, 550, 553, 682, 939, 980
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PscI	ACATGT	1 cut(s)	827
PshBI	ATTAAT	1 cut(s)	434
Psp6I	CCWGG	1 cut(s)	795
PspGI	CCWGG	1 cut(s)	795
PspN4I	GGNNCC	2 cut(s)	749, 1038
PspPI	GGNCC	3 cut(s)	495, 857, 881
PstI	CTGCAG	1 cut(s)	1069
PstNI	CAGNNNCTG	2 cut(s)	744, 1073
PsuI	RGATCY	1 cut(s)	1070
RsaI	GTAC	5 cut(s)	228, 284, 811, 832, 866
RsaNI	GTAC	5 cut(s)	227, 283, 810, 831, 865
RseI	CAYNNNNRTG	3 cut(s)	221, 564, 848
SaqAI	TTAA	5 cut(s)	18, 50, 302, 395, 434
SatI	GCNGC	6 cut(s)	105, 549, 552, 681, 938, 979
Sau3AI	GATC	2 cut(s)	1070, 1156
Sau96I	GGNCC	3 cut(s)	495, 857, 881
SchI	GAGTC	1 cut(s)	90
ScrFI	CCNGG	2 cut(s)	344, 797
SfcI	CTRYAG	2 cut(s)	1065, 1074
SinI	GGWCC	1 cut(s)	495
SmiMI	CAYNNNNRTG	3 cut(s)	221, 564, 848
Sse9I	AATT	5 cut(s)	277, 391, 630, 687, 1083
SsiI	CCGC	3 cut(s)	105, 962, 978
SspI	AATATT	1 cut(s)	772
SspMI	CTAG	4 cut(s)	593, 663, 956, 1171
StyD4I	CCNGG	2 cut(s)	342, 795
TaaI	ACNGT	4 cut(s)	163, 787, 805, 1138
TaiI	ACGT	1 cut(s)	308
TasI	AATT	5 cut(s)	277, 391, 630, 687, 1083
TatI	WGTACW	2 cut(s)	282, 830
TauI	GCSGC	2 cut(s)	107, 981
TfiI	GAWTC	2 cut(s)	1027, 1061
Tru1I	TTAA	5 cut(s)	18, 50, 302, 395, 434
Tru9I	TTAA	5 cut(s)	18, 50, 302, 395, 434
TseFI	GTSAC	2 cut(s)	270, 1138
TseI	GCWGC	4 cut(s)	548, 551, 680, 937
Tsp45I	GTSAC	2 cut(s)	270, 1138
TspDTI	ATGAA	1 cut(s)	1142
VpaK11BI	GGWCC	1 cut(s)	495
VspI	ATTAAT	1 cut(s)	434
XapI	RAATTY	2 cut(s)	277, 391
XceI	RCATGY	1 cut(s)	831
XspI	CTAG	4 cut(s)	593, 663, 956, 1171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.