Prupe.1G561500_v2.0.a1

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000337
Physical Location & Seq
Forward (+)
45844130 .. 45846440
2311 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G561500.1

Sequence Viewer

Length: 1125 bp
ATGGTGTGCGTGCGCATCTGTAATGCGCTATATGAGCTGAAACCAGTGTTGGTAATGTTTGTGAGTCATCTTCTAAGTACAGGATTGAATATAATTTTCAAACTGATAGCAAACGATGGGATGAGTTTAAAAGTCTTCAGTGCCTACCGTGTCCTCTTTGCCTCTGCCGTTATGATACCTCTTGCTCTTGTATTTGAAAGGAACAAAAGACCAAAAATGACCTGGACTGTGCTAGCTCAAATTTTTCTCTGTGCGTTATTTGGGATGACACTGGCTCAAAATTTATACCTGGAGAGTATGGTATTTATACCAACAACATTTACCGTGGCGATAGTGAATCTGATTCCTGTCTTCACCTTCATACTGGCCGTATGCTTTCGACAGGAGAAGCTGGGGCTAAGAAGCCTCCAAGGGATCGCGAAACTTGCCGGAACATTGGTGGGGATTGGAGGGGCGATGCTCTTCGTTTTCTACAAAGGCATCACTATAAACGTCTGGCATCATACTGGCCTCTTGGCCATGCCACAAAGCAGCACTTCATCTTCAAACCCTCATCACTCTAATGGTTATGCCTTGGGCACTGTGTTAGCTCTGCTAAGCTGTTTGTCCTCTTCAGCCTGGCTCATAATTCAGGGCAAATTGAGTAAGACCTACCCATGCCCCCTGTCAAACACAGCTTTGATATCCGTCATGGGAACAGTTCAATGTGTGGTTTATGCTCTTAGCACGGAGAGGGATTGGAGCCAATGGAAGTTGGGATGGAATATTAGACTTATTGGAGTTTTTTATGCTGGAATATTGGGTTCTGGAGTTGTTGTGTTCATGACGACATGGTGTGTAAACATGCGAGGGCCATTGTTTGTAGCAAGTTTTAGTCCTGTCCTGCTTGTACTCGTTGCCATATTTTGCTCTTTGTTGCTGGGAGAGAAGTTGTATCTGGGAAGCTTTCTAGGAGGATTTCTAATCATATGTGGGTTGTACCTGGTGATTTGGGGTAAGAGCATCGAAATGAGGAAGATGACTCGAGTAGAACCAATGGAAACCCCCCGACCTTCAGAGGCTCAAACCATCGAAATTGTTTCAACAACTCCTATGCCCATTCACAGTACGACCTCACGAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

375

Amino Acids

41.09

Weight (kDa)

9.47

Isoelectric Point (pI)

34.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 14
AccII CGCG 1 cut(s) 419
AclWI GGATC 1 cut(s) 422
AcoI YGGCCR 2 cut(s) 366, 516
AcsI RAATTY 2 cut(s) 240, 280
AcuI CTGAAG 3 cut(s) 121, 597, 1038
AfaI GTAC 4 cut(s) 79, 891, 980, 1108
AgsI TTSAA 6 cut(s) 88, 100, 197, 546, 704, 1083
AjnI CCWGG 4 cut(s) 221, 288, 617, 981
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AluBI AGCT 7 cut(s) 37, 236, 391, 590, 600, 677, 945
AluI AGCT 7 cut(s) 37, 236, 391, 590, 600, 677, 945
AlwI GGATC 1 cut(s) 422
Ama87I CYCGRG 1 cut(s) 1023
AoxI GGCC 4 cut(s) 366, 508, 516, 851
ApeKI GCWGC 1 cut(s) 531
ApoI RAATTY 2 cut(s) 240, 280
AspLEI GCGC 2 cut(s) 15, 28
AspS9I GGNCC 1 cut(s) 851
AsuHPI GGTGA 2 cut(s) 346, 997
AsuNHI GCTAGC 1 cut(s) 232
AvaI CYCGRG 1 cut(s) 1023
BaeGI GKGCMC 1 cut(s) 581
BalI TGGCCA 1 cut(s) 518
BauI CACGAG 1 cut(s) 1116
BbsI GAAGAC 2 cut(s) 127, 343
BbvI GCAGC 1 cut(s) 543
BccI CCATC 3 cut(s) 110, 753, 1076
BceAI ACGGC 2 cut(s) 152, 353
BciT130I CCWGG 4 cut(s) 223, 290, 619, 983
BfaI CTAG 2 cut(s) 233, 950
BisI GCNGC 1 cut(s) 532
BlpI GCTNAGC 1 cut(s) 596
BlsI GCNGC 1 cut(s) 533
Bme1390I CCNGG 4 cut(s) 223, 290, 619, 983
BmeT110I CYCGRG 1 cut(s) 1023
BmgT120I GGNCC 1 cut(s) 851
BmiI GGNNCC 1 cut(s) 743
BmrFI CCNGG 4 cut(s) 223, 290, 619, 983
BmsI GCATC 5 cut(s) 24, 447, 489, 508, 1011
BmtI GCTAGC 1 cut(s) 236
BpiI GAAGAC 2 cut(s) 127, 343
BpmI CTGGAG 2 cut(s) 311, 828
Bpu1102I GCTNAGC 1 cut(s) 596
BsaJI CCNNGG 3 cut(s) 324, 409, 573
BsaXI ACNNNNNCTCC 2 cut(s) 801, 831
Bse1I ACTGG 4 cut(s) 44, 276, 369, 511
BseBI CCWGG 4 cut(s) 223, 290, 619, 983
BseDI CCNNGG 3 cut(s) 324, 409, 573
BseGI GGATG 3 cut(s) 126, 270, 764
BseNI ACTGG 4 cut(s) 44, 276, 369, 511
BseSI GKGCMC 1 cut(s) 581
BseXI GCAGC 1 cut(s) 543
BseYI CCCAGC 2 cut(s) 391, 919
Bsh1236I CGCG 1 cut(s) 419
BshFI GGCC 4 cut(s) 368, 510, 518, 853
BsiHKCI CYCGRG 1 cut(s) 1023
BsiSI CCGG 1 cut(s) 429
BsnI GGCC 4 cut(s) 368, 510, 518, 853
BsoBI CYCGRG 1 cut(s) 1023
Bsp1286I GDGCHC 1 cut(s) 581
Bsp143I GATC 1 cut(s) 414
Bsp1720I GCTNAGC 1 cut(s) 596
Bsp68I TCGCGA 1 cut(s) 419
BspANI GGCC 4 cut(s) 368, 510, 518, 853
BspFNI CGCG 1 cut(s) 419
BspHI TCATGA 1 cut(s) 822
BspLI GGNNCC 1 cut(s) 743
BspOI GCTAGC 1 cut(s) 236
BspPI GGATC 1 cut(s) 422
BspQI GCTCTTC 1 cut(s) 467
BsrI ACTGG 4 cut(s) 44, 276, 369, 511
BssECI CCNNGG 3 cut(s) 324, 409, 573
BssMI GATC 1 cut(s) 414
BssSI CACGAG 1 cut(s) 1116
BssT1I CCWWGG 2 cut(s) 409, 573
Bst2BI CACGAG 1 cut(s) 1116
Bst2UI CCWGG 4 cut(s) 223, 290, 619, 983
Bst4CI ACNGT 6 cut(s) 149, 229, 325, 583, 700, 1106
Bst6I CTCTTC 2 cut(s) 467, 616
BstC8I GCNNGC 2 cut(s) 11, 234
BstDEI CTNAG 4 cut(s) 74, 398, 596, 722
BstDSI CCRYGG 1 cut(s) 324
BstF5I GGATG 3 cut(s) 126, 270, 764
BstFNI CGCG 1 cut(s) 419
BstHHI GCGC 2 cut(s) 15, 28
BstKTI GATC 1 cut(s) 417
BstMBI GATC 1 cut(s) 414
BstMWI GCNNNNNNNGC 2 cut(s) 34, 425
BstNI CCWGG 4 cut(s) 223, 290, 619, 983
BstNSI RCATGY 1 cut(s) 847
BstSCI CCNGG 4 cut(s) 221, 288, 617, 981
BstSLI GKGCMC 1 cut(s) 581
BstUI CGCG 1 cut(s) 419
BstV1I GCAGC 1 cut(s) 543
BstV2I GAAGAC 2 cut(s) 127, 343
BsuRI GGCC 4 cut(s) 368, 510, 518, 853
BtgI CCRYGG 1 cut(s) 324
BtgZI GCGATG 1 cut(s) 470
BtsCI GGATG 3 cut(s) 126, 270, 764
BtsIMutI CAGTG 4 cut(s) 51, 145, 269, 579
BtuMI TCGCGA 1 cut(s) 419
Cac8I GCNNGC 2 cut(s) 11, 234
CciI TCATGA 1 cut(s) 822
CfoI GCGC 2 cut(s) 15, 28
Cfr13I GGNCC 1 cut(s) 851
CsiI ACCWGGT 1 cut(s) 981
Csp6I GTAC 4 cut(s) 78, 890, 979, 1107
CviAII CATG 6 cut(s) 520, 657, 691, 823, 831, 844
CviQI GTAC 4 cut(s) 78, 890, 979, 1107
DdeI CTNAG 4 cut(s) 74, 398, 596, 722
DpnI GATC 1 cut(s) 416
DpnII GATC 1 cut(s) 414
DraI TTTAAA 1 cut(s) 129
EaeI YGGCCR 2 cut(s) 366, 516
Eam1104I CTCTTC 2 cut(s) 467, 616
EarI CTCTTC 2 cut(s) 467, 616
Eco130I CCWWGG 2 cut(s) 409, 573
Eco32I GATATC 1 cut(s) 684
Eco57I CTGAAG 3 cut(s) 121, 597, 1038
Eco88I CYCGRG 1 cut(s) 1023
EcoRII CCWGG 4 cut(s) 221, 288, 617, 981
EcoRV GATATC 1 cut(s) 684
EcoT14I CCWWGG 2 cut(s) 409, 573
ErhI CCWWGG 2 cut(s) 409, 573
FaeI CATG 6 cut(s) 523, 660, 694, 826, 834, 847
FalI AAGNNNNNCTT 2 cut(s) 520, 552
FatI CATG 6 cut(s) 519, 656, 690, 822, 830, 843
FauNDI CATATG 1 cut(s) 968
Fnu4HI GCNGC 1 cut(s) 532
FokI GGATG 3 cut(s) 133, 277, 771
Fsp4HI GCNGC 1 cut(s) 532
FspAI RTGCGCAY 1 cut(s) 14
FspBI CTAG 2 cut(s) 233, 950
FspI TGCGCA 1 cut(s) 14
GlaI GCGC 2 cut(s) 14, 27
GluI GCNGC 1 cut(s) 532
GsaI CCCAGC 2 cut(s) 395, 923
GsuI CTGGAG 2 cut(s) 311, 828
HaeIII GGCC 4 cut(s) 368, 510, 518, 853
HapII CCGG 1 cut(s) 429
HhaI GCGC 2 cut(s) 15, 28
Hin1II CATG 6 cut(s) 523, 660, 694, 826, 834, 847
Hin6I GCGC 2 cut(s) 13, 26
HinP1I GCGC 2 cut(s) 13, 26
HindIII AAGCTT 1 cut(s) 943
HinfI GANTC 4 cut(s) 64, 337, 343, 1021
HpaII CCGG 1 cut(s) 429
HphI GGTGA 2 cut(s) 346, 997
Hpy166II GTNNAC 1 cut(s) 841
Hpy188I TCNGA 2 cut(s) 342, 1057
Hpy188III TCNNGA 4 cut(s) 418, 807, 823, 1116
Hpy8I GTNNAC 1 cut(s) 841
HpyAV CCTTC 2 cut(s) 367, 1062
HpyCH4III ACNGT 6 cut(s) 149, 229, 325, 583, 700, 1106
HpyCH4IV ACGT 1 cut(s) 492
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 425
HpyF3I CTNAG 4 cut(s) 74, 398, 596, 722
HpySE526I ACGT 1 cut(s) 492
Hsp92II CATG 6 cut(s) 523, 660, 694, 826, 834, 847
HspAI GCGC 2 cut(s) 13, 26
Kzo9I GATC 1 cut(s) 414
LguI GCTCTTC 1 cut(s) 467
LmnI GCTCC 1 cut(s) 741
Lsp1109I GCAGC 1 cut(s) 543
LweI GCATC 5 cut(s) 24, 447, 489, 508, 1011
MabI ACCWGGT 1 cut(s) 981
MaeI CTAG 2 cut(s) 233, 950
MaeII ACGT 1 cut(s) 492
MalI GATC 1 cut(s) 416
MboI GATC 1 cut(s) 414
MboII GAAGA 7 cut(s) 62, 127, 343, 454, 534, 603, 1027
MhlI GDGCHC 1 cut(s) 581
MlsI TGGCCA 1 cut(s) 518
MluCI AATT 6 cut(s) 93, 240, 280, 627, 638, 1074
MluNI TGGCCA 1 cut(s) 518
MlyI GAGTC 2 cut(s) 73, 1015
Mox20I TGGCCA 1 cut(s) 518
MscI TGGCCA 1 cut(s) 518
MseI TTAA 2 cut(s) 128, 1123
MslI CAYNNNNRTG 2 cut(s) 561, 1007
Msp20I TGGCCA 1 cut(s) 518
MspI CCGG 1 cut(s) 429
MspR9I CCNGG 4 cut(s) 223, 290, 619, 983
MvaI CCWGG 4 cut(s) 223, 290, 619, 983
MvnI CGCG 1 cut(s) 419
MwoI GCNNNNNNNGC 2 cut(s) 34, 425
NdeI CATATG 1 cut(s) 968
NdeII GATC 1 cut(s) 414
NheI GCTAGC 1 cut(s) 232
NlaIII CATG 6 cut(s) 523, 660, 694, 826, 834, 847
NlaIV GGNNCC 1 cut(s) 743
NruI TCGCGA 1 cut(s) 419
NsbI TGCGCA 1 cut(s) 14
NspI RCATGY 1 cut(s) 847
PaeR7I CTCGAG 1 cut(s) 1023
PagI TCATGA 1 cut(s) 822
PciSI GCTCTTC 1 cut(s) 467
PfeI GAWTC 2 cut(s) 337, 343
PkrI GCNGC 1 cut(s) 533
PleI GAGTC 2 cut(s) 72, 1015
PpsI GAGTC 2 cut(s) 72, 1015
Psp6I CCWGG 4 cut(s) 221, 288, 617, 981
PspFI CCCAGC 2 cut(s) 391, 919
PspGI CCWGG 4 cut(s) 221, 288, 617, 981
PspN4I GGNNCC 1 cut(s) 743
PspPI GGNCC 1 cut(s) 851
PspXI VCTCGAGB 1 cut(s) 1023
RruI TCGCGA 1 cut(s) 419
RsaI GTAC 4 cut(s) 79, 891, 980, 1108
RsaNI GTAC 4 cut(s) 78, 890, 979, 1107
RseI CAYNNNNRTG 2 cut(s) 561, 1007
SapI GCTCTTC 1 cut(s) 467
SaqAI TTAA 2 cut(s) 128, 1123
SatI GCNGC 1 cut(s) 532
Sau3AI GATC 1 cut(s) 414
Sau96I GGNCC 1 cut(s) 851
SchI GAGTC 2 cut(s) 73, 1015
ScrFI CCNGG 4 cut(s) 223, 290, 619, 983
SduI GDGCHC 1 cut(s) 581
SexAI ACCWGGT 1 cut(s) 981
SfaNI GCATC 5 cut(s) 24, 447, 489, 508, 1011
Sfr274I CTCGAG 1 cut(s) 1023
SlaI CTCGAG 1 cut(s) 1023
SmiMI CAYNNNNRTG 2 cut(s) 561, 1007
SmlI CTYRAG 1 cut(s) 1023
SmoI CTYRAG 1 cut(s) 1023
Sse9I AATT 6 cut(s) 93, 240, 280, 627, 638, 1074
SspI AATATT 2 cut(s) 766, 798
SspMI CTAG 2 cut(s) 233, 950
StyD4I CCNGG 4 cut(s) 221, 288, 617, 981
StyI CCWWGG 2 cut(s) 409, 573
TaaI ACNGT 6 cut(s) 149, 229, 325, 583, 700, 1106
TaiI ACGT 1 cut(s) 495
TaqI TCGA 4 cut(s) 379, 1005, 1024, 1071
TasI AATT 6 cut(s) 93, 240, 280, 627, 638, 1074
TatI WGTACW 2 cut(s) 77, 889
TfiI GAWTC 2 cut(s) 337, 343
Tru1I TTAA 2 cut(s) 128, 1123
Tru9I TTAA 2 cut(s) 128, 1123
TscAI CASTG 4 cut(s) 51, 145, 276, 586
TseI GCWGC 1 cut(s) 531
TspDTI ATGAA 3 cut(s) 349, 528, 811
TspGWI ACGGA 2 cut(s) 676, 743
TspRI CASTG 4 cut(s) 51, 145, 276, 586
XapI RAATTY 2 cut(s) 240, 280
XceI RCATGY 1 cut(s) 847
XcmI CCANNNNNNNNNTGG 1 cut(s) 219
XhoI CTCGAG 1 cut(s) 1023
XspI CTAG 2 cut(s) 233, 950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.