Rmu_sc0007613.1_g000002

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007613.1
OG0000337
Physical Location & Seq
Reverse (-)
7560 .. 8618
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007613.1_g000002.1.cds

Sequence Viewer

Length: 513 bp
atgaataagggatatccctacctatactcgagcacagctctaatggccttcatgggatcagttcaatctgtagctttttccatttgcatggatagggattggaagcagtggaagttgggatggaacattcaacttcttgcaatgtcttattcgggtattttcaactctggaattgctgtgactctaatggcatggtgcgtaaagaagggaggaccagtgttcgttgcaagttttcagcctctcttgcttgtgatggttgcagttgctgggtctctgcttctggatgagaagttgcaccttggaagtgtactaggtggattgctgattgtgagtggactatacatggtattgtggggtaagagtaaggaaatgaagaatcagataacgccattaccggcgccagcaagcctccaatgccaagatgaacaccaatctcctacgatcgaagtcattacatcatcttctatggaggacatgaaccacatcaatgacagaaatgtgacaaataattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

170

Amino Acids

18.68

Weight (kDa)

6.81

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 397
AclWI GGATC 1 cut(s) 64
AcyI GRCGYC 1 cut(s) 398
AfaI GTAC 1 cut(s) 309
AgsI TTSAA 3 cut(s) 65, 131, 163
AluBI AGCT 2 cut(s) 38, 74
AluI AGCT 2 cut(s) 38, 74
Alw21I GWGCWC 1 cut(s) 35
Alw26I GTCTC 1 cut(s) 276
AlwI GGATC 1 cut(s) 64
AlwNI CAGNNNCTG 1 cut(s) 266
Ama87I CYCGRG 1 cut(s) 28
AoxI GGCC 1 cut(s) 45
AspLEI GCGC 1 cut(s) 400
AspS9I GGNCC 1 cut(s) 212
AvaI CYCGRG 1 cut(s) 28
AvaII GGWCC 1 cut(s) 212
BanI GGYRCC 1 cut(s) 397
Bbv12I GWGCWC 1 cut(s) 35
BccI CCATC 2 cut(s) 114, 247
BcoDI GTCTC 1 cut(s) 276
BfaI CTAG 1 cut(s) 311
BfmI CTRYAG 1 cut(s) 69
BfoI RGCGCY 1 cut(s) 401
Bme18I GGWCC 1 cut(s) 212
BmeT110I CYCGRG 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 212
BmiI GGNNCC 1 cut(s) 399
BplI GAGNNNNNCTC 2 cut(s) 22, 54
BsaHI GRCGYC 1 cut(s) 398
BsaI GGTCTC 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 298
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bse118I RCCGGY 1 cut(s) 394
Bse1I ACTGG 1 cut(s) 215
Bse3DI GCAATG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 2 cut(s) 125, 289
BseMI GCAATG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 215
BseYI CCCAGC 1 cut(s) 266
Bsh1285I CGRYCG 1 cut(s) 444
BshFI GGCC 1 cut(s) 47
BshNI GGYRCC 1 cut(s) 397
BsiEI CGRYCG 1 cut(s) 444
BsiHKAI GWGCWC 1 cut(s) 35
BsiHKCI CYCGRG 1 cut(s) 28
BsiSI CCGG 1 cut(s) 395
BsmAI GTCTC 1 cut(s) 276
BsnI GGCC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 276
BsoBI CYCGRG 1 cut(s) 28
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 2 cut(s) 56, 441
BspANI GGCC 1 cut(s) 47
BspLI GGNNCC 1 cut(s) 399
BspPI GGATC 1 cut(s) 64
BspT107I GGYRCC 1 cut(s) 397
BspTNI GGTCTC 1 cut(s) 276
BsrDI GCAATG 1 cut(s) 147
BsrFI RCCGGY 1 cut(s) 394
BsrI ACTGG 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 394
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 2 cut(s) 56, 441
BssNI GRCGYC 1 cut(s) 398
BssT1I CCWWGG 1 cut(s) 298
BstACI GRCGYC 1 cut(s) 398
BstC8I GCNNGC 2 cut(s) 402, 406
BstF5I GGATG 2 cut(s) 125, 289
BstH2I RGCGCY 1 cut(s) 401
BstHHI GCGC 1 cut(s) 400
BstKTI GATC 2 cut(s) 59, 444
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 2 cut(s) 56, 441
BstMCI CGRYCG 1 cut(s) 444
BstMWI GCNNNNNNNGC 3 cut(s) 44, 244, 414
BstSFI CTRYAG 1 cut(s) 69
BstXI CCANNNNNNTGG 1 cut(s) 88
BsuRI GGCC 1 cut(s) 47
BtsCI GGATG 2 cut(s) 125, 289
BtsI GCAGTG 1 cut(s) 113
BtsIMutI CAGTG 2 cut(s) 113, 222
Cac8I GCNNGC 2 cut(s) 402, 406
CaiI CAGNNNCTG 1 cut(s) 266
CfoI GCGC 1 cut(s) 400
Cfr10I RCCGGY 1 cut(s) 394
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 308
CviAII CATG 5 cut(s) 52, 88, 192, 343, 475
CviJI RGCY 5 cut(s) 38, 47, 74, 238, 408
CviKI_1 RGCY 5 cut(s) 38, 47, 74, 238, 408
CviQI GTAC 1 cut(s) 308
DinI GGCGCC 1 cut(s) 399
DpnI GATC 2 cut(s) 58, 443
DpnII GATC 2 cut(s) 56, 441
Eco130I CCWWGG 1 cut(s) 298
Eco31I GGTCTC 1 cut(s) 276
Eco32I GATATC 1 cut(s) 14
Eco47I GGWCC 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 28
EcoRV GATATC 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 298
EgeI GGCGCC 1 cut(s) 399
EheI GGCGCC 1 cut(s) 399
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 5 cut(s) 55, 91, 195, 346, 478
FaiI YATR 8 cut(s) 25, 53, 89, 193, 340, 344, 467, 476
FatI CATG 5 cut(s) 51, 87, 191, 342, 474
FokI GGATG 2 cut(s) 132, 296
FspBI CTAG 1 cut(s) 311
GlaI GCGC 1 cut(s) 399
GsaI CCCAGC 1 cut(s) 270
HaeII RGCGCY 1 cut(s) 401
HaeIII GGCC 1 cut(s) 47
HapII CCGG 1 cut(s) 395
HhaI GCGC 1 cut(s) 400
Hin1I GRCGYC 1 cut(s) 398
Hin1II CATG 5 cut(s) 55, 91, 195, 346, 478
Hin6I GCGC 1 cut(s) 398
HinP1I GCGC 1 cut(s) 398
HinfI GANTC 2 cut(s) 181, 376
HpaII CCGG 1 cut(s) 395
Hpy166II GTNNAC 2 cut(s) 308, 335
Hpy188I TCNGA 1 cut(s) 381
Hpy188III TCNNGA 2 cut(s) 168, 281
Hpy8I GTNNAC 2 cut(s) 308, 335
HpyAV CCTTC 2 cut(s) 58, 199
HpyCH4V TGCA 5 cut(s) 87, 140, 227, 260, 295
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 244, 414
Hsp92I GRCGYC 1 cut(s) 398
Hsp92II CATG 5 cut(s) 55, 91, 195, 346, 478
HspAI GCGC 1 cut(s) 398
KasI GGCGCC 1 cut(s) 397
Kzo9I GATC 2 cut(s) 56, 441
LpnPI CCDG 6 cut(s) 153, 228, 252, 266, 408, 414
MaeI CTAG 1 cut(s) 311
MaeIII GTNAC 2 cut(s) 178, 499
MalI GATC 2 cut(s) 58, 443
MboI GATC 2 cut(s) 56, 441
MboII GAAGA 2 cut(s) 385, 453
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 2 cut(s) 171, 508
Mly113I GGCGCC 1 cut(s) 398
MlyI GAGTC 1 cut(s) 175
MnlI CCTC 4 cut(s) 203, 249, 419, 463
MslI CAYNNNNRTG 2 cut(s) 86, 486
MspI CCGG 1 cut(s) 395
MwoI GCNNNNNNNGC 3 cut(s) 44, 244, 414
NarI GGCGCC 1 cut(s) 398
NdeII GATC 2 cut(s) 56, 441
NlaIII CATG 5 cut(s) 55, 91, 195, 346, 478
NlaIV GGNNCC 1 cut(s) 399
NmuCI GTSAC 2 cut(s) 178, 499
PaeR7I CTCGAG 1 cut(s) 28
PfeI GAWTC 1 cut(s) 376
Ple19I CGATCG 1 cut(s) 444
PleI GAGTC 1 cut(s) 175
PluTI GGCGCC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 175
PspFI CCCAGC 1 cut(s) 266
PspN4I GGNNCC 1 cut(s) 399
PspPI GGNCC 1 cut(s) 212
PspXI VCTCGAGB 1 cut(s) 28
PstNI CAGNNNCTG 1 cut(s) 266
PvuI CGATCG 1 cut(s) 444
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
RseI CAYNNNNRTG 2 cut(s) 86, 486
Sau3AI GATC 2 cut(s) 56, 441
Sau96I GGNCC 1 cut(s) 212
SchI GAGTC 1 cut(s) 175
SduI GDGCHC 1 cut(s) 35
SetI ASST 5 cut(s) 24, 40, 76, 300, 316
SfcI CTRYAG 1 cut(s) 69
SfoI GGCGCC 1 cut(s) 399
Sfr274I CTCGAG 1 cut(s) 28
SinI GGWCC 1 cut(s) 212
SlaI CTCGAG 1 cut(s) 28
SmiMI CAYNNNNRTG 2 cut(s) 86, 486
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
Sse9I AATT 2 cut(s) 171, 508
SspDI GGCGCC 1 cut(s) 397
SspMI CTAG 1 cut(s) 311
StyI CCWWGG 1 cut(s) 298
TaqI TCGA 2 cut(s) 29, 444
TasI AATT 2 cut(s) 171, 508
TatI WGTACW 1 cut(s) 307
TfiI GAWTC 1 cut(s) 376
TscAI CASTG 2 cut(s) 113, 222
TseFI GTSAC 2 cut(s) 178, 499
Tsp45I GTSAC 2 cut(s) 178, 499
TspDTI ATGAA 5 cut(s) 17, 40, 386, 438, 491
TspRI CASTG 2 cut(s) 113, 222
VpaK11BI GGWCC 1 cut(s) 212
XhoI CTCGAG 1 cut(s) 28
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.