Rmu_sc0000144.1_g000002

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000144.1
OG0000337
Physical Location & Seq
Forward (+)
12257 .. 14305
2049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000144.1_g000002.1.cds

Sequence Viewer

Length: 597 bp
atgatgatgatggggggtacctggattgagctttgcaatgctctgcatggcctgaagctagtgctgttaatggtggcggttcaggtaaccttcgccggagtcaacattttatacaaactcgccgccaacgatggcatgaacatcaatcttgttattgcttatcgcttcctcttcgccaccgctttcctcactccttttgctctttacttcgaaaggggggcaatgtcacaaaacatgtacattgcaagcatagccttgacatccgcgacttttgcttgcgccataacccaactcattccggccataactttcgtcttggccgtcattttcaggagcatgggagggaaggcaaaggtgttgggaacattaatgggaataggtggagcaatgcttctgaccctttataaaggtgtggaaatcaacatatggtccacgcatgttgaccttttgcacagaagtcatcaaccaagcagccacgtggcagctcataacagtagaacagatttcacagatcgcatattgagttgtcttctggctctcggcagctcttccggttatgcattgtggctaattattcaggttatctacccattctaa

Protein Analysis

198

Amino Acids

21.6

Weight (kDa)

9.1

Isoelectric Point (pI)

40.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 405
Acc65I GGTACC 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 17
AccII CGCG 1 cut(s) 266
AciI CCGC 4 cut(s) 77, 123, 180, 264
AcoI YGGCCR 2 cut(s) 300, 318
AcuI CTGAAG 1 cut(s) 74
AcvI CACGTG 1 cut(s) 478
AfaI GTAC 2 cut(s) 19, 239
AflIII ACRYGT 1 cut(s) 234
AjnI CCWGG 1 cut(s) 20
AluBI AGCT 4 cut(s) 31, 58, 485, 546
AluI AGCT 4 cut(s) 31, 58, 485, 546
AoxI GGCC 3 cut(s) 49, 300, 318
ApeKI GCWGC 3 cut(s) 471, 482, 543
AseI ATTAAT 1 cut(s) 368
Asp718I GGTACC 1 cut(s) 17
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 429
AsuII TTCGAA 1 cut(s) 210
AvaII GGWCC 1 cut(s) 429
BanI GGYRCC 1 cut(s) 17
BbrPI CACGTG 1 cut(s) 478
BbsI GAAGAC 1 cut(s) 521
BbvI GCAGC 3 cut(s) 483, 494, 555
BccI CCATC 2 cut(s) 4, 125
BceAI ACGGC 1 cut(s) 305
BciT130I CCWGG 1 cut(s) 22
BfaI CTAG 1 cut(s) 59
BisI GCNGC 4 cut(s) 123, 472, 483, 544
BlsI GCNGC 4 cut(s) 124, 473, 484, 545
Bme1390I CCNGG 1 cut(s) 22
Bme18I GGWCC 1 cut(s) 429
BmgT120I GGNCC 1 cut(s) 429
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 521
Bpu14I TTCGAA 1 cut(s) 210
BsaAI YACGTR 1 cut(s) 478
BsaWI WCCGGW 1 cut(s) 551
Bse3DI GCAATG 4 cut(s) 43, 228, 240, 393
BseBI CCWGG 1 cut(s) 22
BseGI GGATG 1 cut(s) 260
BseMI GCAATG 4 cut(s) 43, 228, 240, 393
BseXI GCAGC 3 cut(s) 483, 494, 555
Bsh1236I CGCG 1 cut(s) 266
BshFI GGCC 3 cut(s) 51, 302, 320
BshNI GGYRCC 1 cut(s) 17
BsiSI CCGG 3 cut(s) 96, 299, 552
BsnI GGCC 3 cut(s) 51, 302, 320
Bsp119I TTCGAA 1 cut(s) 210
Bsp1407I TGTACA 1 cut(s) 237
Bsp143I GATC 1 cut(s) 511
BspACI CCGC 4 cut(s) 77, 123, 180, 264
BspANI GGCC 3 cut(s) 51, 302, 320
BspFNI CGCG 1 cut(s) 266
BspLI GGNNCC 1 cut(s) 19
BspQI GCTCTTC 1 cut(s) 553
BspT104I TTCGAA 1 cut(s) 210
BspT107I GGYRCC 1 cut(s) 17
BsrDI GCAATG 4 cut(s) 43, 228, 240, 393
BsrGI TGTACA 1 cut(s) 237
BssMI GATC 1 cut(s) 511
Bst2UI CCWGG 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 494
Bst6I CTCTTC 2 cut(s) 176, 553
BstAUI TGTACA 1 cut(s) 237
BstBAI YACGTR 1 cut(s) 478
BstBI TTCGAA 1 cut(s) 210
BstC8I GCNNGC 2 cut(s) 247, 277
BstEII GGTNACC 1 cut(s) 85
BstF5I GGATG 1 cut(s) 260
BstFNI CGCG 1 cut(s) 266
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 1 cut(s) 514
BstMBI GATC 1 cut(s) 511
BstMWI GCNNNNNNNGC 2 cut(s) 251, 272
BstNI CCWGG 1 cut(s) 22
BstNSI RCATGY 2 cut(s) 238, 440
BstPI GGTNACC 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 20
BstUI CGCG 1 cut(s) 266
BstV1I GCAGC 3 cut(s) 483, 494, 555
BstV2I GAAGAC 1 cut(s) 521
BsuRI GGCC 3 cut(s) 51, 302, 320
BtsCI GGATG 1 cut(s) 260
Cac8I GCNNGC 2 cut(s) 247, 277
CfoI GCGC 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 429
Csp6I GTAC 2 cut(s) 18, 238
CspCI CAANNNNNGTGG 2 cut(s) 421, 456
CviAII CATG 5 cut(s) 47, 136, 235, 337, 437
CviQI GTAC 2 cut(s) 18, 238
DpnI GATC 1 cut(s) 513
DpnII GATC 1 cut(s) 511
EaeI YGGCCR 2 cut(s) 300, 318
Eam1104I CTCTTC 2 cut(s) 176, 553
EarI CTCTTC 2 cut(s) 176, 553
Eco47I GGWCC 1 cut(s) 429
Eco57I CTGAAG 1 cut(s) 74
Eco72I CACGTG 1 cut(s) 478
Eco91I GGTNACC 1 cut(s) 85
EcoO65I GGTNACC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 20
EcoT22I ATGCAT 1 cut(s) 562
FaeI CATG 5 cut(s) 50, 139, 238, 340, 440
FatI CATG 5 cut(s) 46, 135, 234, 336, 436
FauNDI CATATG 1 cut(s) 425
Fnu4HI GCNGC 4 cut(s) 123, 472, 483, 544
FokI GGATG 1 cut(s) 247
Fsp4HI GCNGC 4 cut(s) 123, 472, 483, 544
FspBI CTAG 1 cut(s) 59
GlaI GCGC 1 cut(s) 280
GluI GCNGC 4 cut(s) 123, 472, 483, 544
HaeIII GGCC 3 cut(s) 51, 302, 320
HapII CCGG 3 cut(s) 96, 299, 552
HhaI GCGC 1 cut(s) 281
Hin1II CATG 5 cut(s) 50, 139, 238, 340, 440
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HincII GTYRAC 2 cut(s) 103, 442
HindII GTYRAC 2 cut(s) 103, 442
HinfI GANTC 1 cut(s) 99
HpaII CCGG 3 cut(s) 96, 299, 552
Hpy166II GTNNAC 3 cut(s) 103, 432, 442
Hpy188I TCNGA 1 cut(s) 396
Hpy188III TCNNGA 1 cut(s) 331
Hpy8I GTNNAC 3 cut(s) 103, 432, 442
HpyAV CCTTC 2 cut(s) 100, 340
HpyCH4III ACNGT 1 cut(s) 494
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 5 cut(s) 36, 46, 245, 451, 560
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 272
HpySE526I ACGT 1 cut(s) 477
Hsp92II CATG 5 cut(s) 50, 139, 238, 340, 440
HspAI GCGC 1 cut(s) 279
KpnI GGTACC 1 cut(s) 21
Kzo9I GATC 1 cut(s) 511
LguI GCTCTTC 1 cut(s) 553
LmnI GCTCC 2 cut(s) 333, 383
Lsp1109I GCAGC 3 cut(s) 483, 494, 555
MaeI CTAG 1 cut(s) 59
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 2 cut(s) 85, 225
MalI GATC 1 cut(s) 513
MboI GATC 1 cut(s) 511
MboII GAAGA 3 cut(s) 163, 521, 540
MluCI AATT 1 cut(s) 570
MlyI GAGTC 1 cut(s) 108
MnlI CCTC 3 cut(s) 179, 197, 335
Mph1103I ATGCAT 1 cut(s) 562
MseI TTAA 2 cut(s) 68, 368
MspI CCGG 3 cut(s) 96, 299, 552
MspR9I CCNGG 1 cut(s) 22
MvaI CCWGG 1 cut(s) 22
MvnI CGCG 1 cut(s) 266
MwoI GCNNNNNNNGC 2 cut(s) 251, 272
NdeI CATATG 1 cut(s) 425
NdeII GATC 1 cut(s) 511
NlaIII CATG 5 cut(s) 50, 139, 238, 340, 440
NlaIV GGNNCC 1 cut(s) 19
NmeAIII GCCGAG 1 cut(s) 519
NmuCI GTSAC 1 cut(s) 225
NsiI ATGCAT 1 cut(s) 562
NspI RCATGY 2 cut(s) 238, 440
NspV TTCGAA 1 cut(s) 210
PciI ACATGT 1 cut(s) 234
PciSI GCTCTTC 1 cut(s) 553
PcsI WCGNNNNNNNCGW 2 cut(s) 126, 318
PkrI GCNGC 4 cut(s) 124, 473, 484, 545
PleI GAGTC 1 cut(s) 107
PmaCI CACGTG 1 cut(s) 478
PmlI CACGTG 1 cut(s) 478
PpsI GAGTC 1 cut(s) 107
Ppu21I YACGTR 1 cut(s) 478
PscI ACATGT 1 cut(s) 234
PshBI ATTAAT 1 cut(s) 368
PsiI TTATAA 1 cut(s) 405
Psp6I CCWGG 1 cut(s) 20
PspCI CACGTG 1 cut(s) 478
PspEI GGTNACC 1 cut(s) 85
PspGI CCWGG 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 1 cut(s) 429
RsaI GTAC 2 cut(s) 19, 239
RsaNI GTAC 2 cut(s) 18, 238
SapI GCTCTTC 1 cut(s) 553
SaqAI TTAA 2 cut(s) 68, 368
SatI GCNGC 4 cut(s) 123, 472, 483, 544
Sau3AI GATC 1 cut(s) 511
Sau96I GGNCC 1 cut(s) 429
SchI GAGTC 1 cut(s) 108
ScrFI CCNGG 1 cut(s) 22
SfuI TTCGAA 1 cut(s) 210
SinI GGWCC 1 cut(s) 429
Sse9I AATT 1 cut(s) 570
SsiI CCGC 4 cut(s) 77, 123, 180, 264
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 494
TaiI ACGT 1 cut(s) 480
TaqI TCGA 1 cut(s) 210
TasI AATT 1 cut(s) 570
TatI WGTACW 1 cut(s) 237
TauI GCSGC 1 cut(s) 125
Tru1I TTAA 2 cut(s) 68, 368
Tru9I TTAA 2 cut(s) 68, 368
TseFI GTSAC 1 cut(s) 225
TseI GCWGC 3 cut(s) 471, 482, 543
Tsp45I GTSAC 1 cut(s) 225
TspDTI ATGAA 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 429
VspI ATTAAT 1 cut(s) 368
XceI RCATGY 2 cut(s) 238, 440
XspI CTAG 1 cut(s) 59
Zsp2I ATGCAT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.