FvH4_1g15161

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000776
Physical Location & Seq
Forward (+)
8599635 .. 8600257
623 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g15161.t1

Sequence Viewer

Length: 438 bp
ATGCAGGAGGAAATGCAGAAAGAGGCCTCTAAATTGAAAAATGAGCAGAAGAATGCAAACCCTGATGTCCCAGAGGGTGAGCTCCCACCTTTGGAGTGGTCGATAAACATTAAGGTGCTTGAAGCAGGAGTCGGTAGAAGAGCCGGGAAGGAGATTCGTGGTCTTGGAAGAGCAGGTGTACGAGAGTCATCATCTTCCGCTCCACGTTTTCGAGTTTATGAGGTGGAGGACAGATTACATATTGCTGAGGAGAGGGCCGAAAAAGCCGAGGTGGTTGTGCAGAACCTTAGTCAAGAGATGGCATTGGTGAAGCAGCAACTAGCAGCAGTGATGTCTTTTATGGCACAGCAGACTGAGTGTCCTCCACAAGTCCCTTCCCAACAACCTCTAAATGAAAATGTTGATGTAGGGAACAACATGGAAGTTGAGAGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.22

Weight (kDa)

4.98

Isoelectric Point (pI)

56.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 164
Acc36I ACCTGC 1 cut(s) 164
AccBSI CCGCTC 1 cut(s) 200
AciI CCGC 1 cut(s) 198
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 2 cut(s) 37, 122
AhdI GACNNNNNGTC 1 cut(s) 357
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
Alw21I GWGCWC 1 cut(s) 84
AoxI GGCC 2 cut(s) 24, 255
ApeKI GCWGC 2 cut(s) 313, 323
AspS9I GGNCC 1 cut(s) 255
AsuC2I CCSGG 1 cut(s) 145
AsuHPI GGTGA 2 cut(s) 89, 319
BanII GRGCYC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 84
BbvCI CCTCAGC 1 cut(s) 246
BbvI GCAGC 2 cut(s) 325, 335
BccI CCATC 1 cut(s) 292
BcnI CCSGG 1 cut(s) 145
BfaI CTAG 2 cut(s) 320, 436
BfuAI ACCTGC 1 cut(s) 164
BisI GCNGC 2 cut(s) 314, 324
BlsI GCNGC 2 cut(s) 315, 325
Bme1390I CCNGG 1 cut(s) 145
BmeRI GACNNNNNGTC 1 cut(s) 357
BmgT120I GGNCC 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 246
BpuMI CCSGG 1 cut(s) 145
BsaJI CCNNGG 1 cut(s) 267
Bsc4I CCNNNNNNNGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 267
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 2 cut(s) 237, 345
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 2 cut(s) 325, 335
BsgI GTGCAG 1 cut(s) 299
BshFI GGCC 2 cut(s) 26, 257
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 1 cut(s) 144
BslFI GGGAC 2 cut(s) 53, 356
BslI CCNNNNNNNGG 1 cut(s) 91
BsmFI GGGAC 2 cut(s) 53, 356
BsmI GAATGC 1 cut(s) 58
BsnI GGCC 2 cut(s) 26, 257
Bsp1286I GDGCHC 1 cut(s) 84
BspACI CCGC 1 cut(s) 198
BspANI GGCC 2 cut(s) 26, 257
BspCNI CTCAG 2 cut(s) 238, 346
BspMI ACCTGC 1 cut(s) 164
BspQI GCTCTTC 2 cut(s) 133, 163
BsrBI CCGCTC 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 267
Bst6I CTCTTC 2 cut(s) 133, 163
BstDEI CTNAG 3 cut(s) 246, 287, 354
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 143
BstV1I GCAGC 2 cut(s) 325, 335
BsuRI GGCC 2 cut(s) 26, 257
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 1 cut(s) 333
BveI ACCTGC 1 cut(s) 164
Cfr13I GGNCC 1 cut(s) 255
Csp6I GTAC 1 cut(s) 179
CviAII CATG 1 cut(s) 418
CviJI RGCY 5 cut(s) 26, 82, 143, 257, 266
CviKI_1 RGCY 5 cut(s) 26, 82, 143, 257, 266
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 3 cut(s) 246, 287, 354
DriI GACNNNNNGTC 1 cut(s) 357
Eam1104I CTCTTC 2 cut(s) 133, 163
Eam1105I GACNNNNNGTC 1 cut(s) 357
EarI CTCTTC 2 cut(s) 133, 163
Ecl136II GAGCTC 1 cut(s) 82
Eco147I AGGCCT 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 82
EcoICRI GAGCTC 1 cut(s) 82
EcoT38I GRGCYC 1 cut(s) 84
FaeI CATG 1 cut(s) 421
FaiI YATR 4 cut(s) 219, 240, 341, 419
FaqI GGGAC 2 cut(s) 53, 356
FatI CATG 1 cut(s) 417
Fnu4HI GCNGC 2 cut(s) 314, 324
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 2 cut(s) 314, 324
FspBI CTAG 2 cut(s) 320, 436
GluI GCNGC 2 cut(s) 314, 324
HaeIII GGCC 2 cut(s) 26, 257
HapII CCGG 1 cut(s) 144
Hin1II CATG 1 cut(s) 421
HinfI GANTC 3 cut(s) 129, 154, 185
HpaII CCGG 1 cut(s) 144
HphI GGTGA 2 cut(s) 89, 319
Hpy166II GTNNAC 1 cut(s) 179
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 142, 384
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 4 cut(s) 4, 16, 56, 280
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 3 cut(s) 246, 287, 354
HpySE526I ACGT 1 cut(s) 205
Hsp92II CATG 1 cut(s) 421
LguI GCTCTTC 2 cut(s) 133, 163
LmnI GCTCC 2 cut(s) 87, 205
LpnPI CCDG 5 cut(s) 75, 84, 111, 157, 159
Lsp1109I GCAGC 2 cut(s) 325, 335
MaeI CTAG 2 cut(s) 320, 436
MaeII ACGT 1 cut(s) 205
MbiI CCGCTC 1 cut(s) 200
MboII GAAGA 4 cut(s) 61, 150, 180, 186
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 1 cut(s) 32
MlyI GAGTC 2 cut(s) 138, 194
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 1 cut(s) 113
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 145
Mva1269I GAATGC 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 263
NciI CCSGG 1 cut(s) 145
NlaIII CATG 1 cut(s) 421
NmeAIII GCCGAG 1 cut(s) 292
PaqCI CACCTGC 1 cut(s) 164
PceI AGGCCT 1 cut(s) 26
PciSI GCTCTTC 2 cut(s) 133, 163
PctI GAATGC 1 cut(s) 58
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 2 cut(s) 315, 325
PleI GAGTC 2 cut(s) 137, 193
PpsI GAGTC 2 cut(s) 137, 193
Psp124BI GAGCTC 1 cut(s) 84
PspPI GGNCC 1 cut(s) 255
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 113
SacI GAGCTC 1 cut(s) 84
SapI GCTCTTC 2 cut(s) 133, 163
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 2 cut(s) 314, 324
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 2 cut(s) 138, 194
ScrFI CCNGG 1 cut(s) 145
SduI GDGCHC 1 cut(s) 84
SetI ASST 9 cut(s) 84, 91, 117, 178, 208, 225, 273, 288, 388
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 1 cut(s) 32
SseBI AGGCCT 1 cut(s) 26
SsiI CCGC 1 cut(s) 198
SspMI CTAG 2 cut(s) 320, 436
SstI GAGCTC 1 cut(s) 84
StuI AGGCCT 1 cut(s) 26
StyD4I CCNGG 1 cut(s) 143
TaiI ACGT 1 cut(s) 208
TaqI TCGA 2 cut(s) 101, 211
TasI AATT 1 cut(s) 32
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 1 cut(s) 333
TseI GCWGC 2 cut(s) 313, 323
TspDTI ATGAA 1 cut(s) 408
TspRI CASTG 1 cut(s) 333
XcmI CCANNNNNNNNNTGG 1 cut(s) 93
XspI CTAG 2 cut(s) 320, 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.