FvH4_6g40360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000776
Physical Location & Seq
Forward (+)
31912574 .. 31912915
342 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40360.t1

Sequence Viewer

Length: 342 bp
ATGGGAGAAATAAAAGGGTCTTACCTTCATGGTATTAGACGAGCAGGCGTCCCAGAGAAGAGCATAAGGTCAACATCTTCCTCTTCATGCTCTCGACCGAATAATGAGGCGATGGCAGAGATTGTGGCTGCTAGAAAGGAGGCGGCTGAGGCACAAGAGAGGGCTGAAAAAGCACAGAAGATCGTTGAGCAATCTGTTGCAGATTATCAAGTGTTGAAGTTGCAAATGGATCAAATCATGGCTCGAATAGGGCTACAGCCTATGTGTTCACCCTCGATCGAAGCCAACAACCTCGAGACGACGATGATGATAGGGGCCTTGACACTTCTCAGATTAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.35

Weight (kDa)

7.78

Isoelectric Point (pI)

54.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 143
AclWI GGATC 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 48
AgsI TTSAA 1 cut(s) 217
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 1 cut(s) 237
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 1 cut(s) 315
ApeKI GCWGC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 261
AvaI CYCGRG 1 cut(s) 293
BbvCI CCTCAGC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 115
BccI CCATC 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 254
BisI GCNGC 2 cut(s) 129, 144
BlsI GCNGC 2 cut(s) 130, 145
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 1 cut(s) 316
Bpu10I CCTNAGC 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 48
BseMII CTCAG 1 cut(s) 138
BseXI GCAGC 1 cut(s) 115
Bsh1285I CGRYCG 2 cut(s) 98, 279
BshFI GGCC 1 cut(s) 317
BsiEI CGRYCG 2 cut(s) 98, 279
BsiHKCI CYCGRG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 290
BsmBI CGTCTC 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 35
BsnI GGCC 1 cut(s) 317
BsoBI CYCGRG 1 cut(s) 293
Bsp143I GATC 3 cut(s) 180, 229, 276
BspACI CCGC 1 cut(s) 143
BspANI GGCC 1 cut(s) 317
BspCNI CTCAG 2 cut(s) 139, 342
BspLI GGNNCC 1 cut(s) 316
BspPI GGATC 1 cut(s) 237
BspQI GCTCTTC 1 cut(s) 53
BssMI GATC 3 cut(s) 180, 229, 276
BssNI GRCGYC 1 cut(s) 48
Bst6I CTCTTC 2 cut(s) 53, 88
BstACI GRCGYC 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 2 cut(s) 147, 329
BstKTI GATC 3 cut(s) 183, 232, 279
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 3 cut(s) 180, 229, 276
BstMCI CGRYCG 2 cut(s) 98, 279
BstMWI GCNNNNNNNGC 2 cut(s) 149, 170
BstSFI CTRYAG 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 317
BtgZI GCGATG 1 cut(s) 125
Cac8I GCNNGC 1 cut(s) 46
Cfr13I GGNCC 1 cut(s) 315
CseI GACGC 1 cut(s) 37
CviAII CATG 3 cut(s) 29, 87, 238
CviJI RGCY 8 cut(s) 128, 146, 164, 242, 253, 259, 284, 317
CviKI_1 RGCY 8 cut(s) 128, 146, 164, 242, 253, 259, 284, 317
DdeI CTNAG 2 cut(s) 147, 329
DpnI GATC 3 cut(s) 182, 231, 278
DpnII GATC 3 cut(s) 180, 229, 276
Eam1104I CTCTTC 2 cut(s) 53, 88
EarI CTCTTC 2 cut(s) 53, 88
Eco88I CYCGRG 1 cut(s) 293
EcoO109I RGGNCCY 1 cut(s) 315
Esp3I CGTCTC 1 cut(s) 290
FaeI CATG 3 cut(s) 32, 90, 241
FaiI YATR 5 cut(s) 30, 65, 88, 239, 263
FaqI GGGAC 1 cut(s) 35
FatI CATG 3 cut(s) 28, 86, 237
Fnu4HI GCNGC 2 cut(s) 129, 144
Fsp4HI GCNGC 2 cut(s) 129, 144
FspBI CTAG 1 cut(s) 132
GluI GCNGC 2 cut(s) 129, 144
HaeIII GGCC 1 cut(s) 317
HgaI GACGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 3 cut(s) 32, 90, 241
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HphI GGTGA 1 cut(s) 261
Hpy166II GTNNAC 2 cut(s) 72, 269
Hpy188I TCNGA 1 cut(s) 332
Hpy188III TCNNGA 2 cut(s) 93, 295
Hpy8I GTNNAC 2 cut(s) 72, 269
Hpy99I CGWCG 1 cut(s) 304
HpyAV CCTTC 1 cut(s) 35
HpyCH4V TGCA 2 cut(s) 200, 223
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 170
HpyF3I CTNAG 2 cut(s) 147, 329
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 3 cut(s) 32, 90, 241
Kzo9I GATC 3 cut(s) 180, 229, 276
LguI GCTCTTC 1 cut(s) 53
LpnPI CCDG 2 cut(s) 30, 66
Lsp1109I GCAGC 1 cut(s) 115
MaeI CTAG 1 cut(s) 132
MalI GATC 3 cut(s) 182, 231, 278
MboI GATC 3 cut(s) 180, 229, 276
MboII GAAGA 4 cut(s) 69, 70, 75, 190
MnlI CCTC 7 cut(s) 91, 100, 133, 142, 153, 283, 302
MwoI GCNNNNNNNGC 2 cut(s) 149, 170
NdeII GATC 3 cut(s) 180, 229, 276
NlaIII CATG 3 cut(s) 32, 90, 241
NlaIV GGNNCC 1 cut(s) 316
PaeR7I CTCGAG 1 cut(s) 293
PciSI GCTCTTC 1 cut(s) 53
PkrI GCNGC 2 cut(s) 130, 145
Ple19I CGATCG 1 cut(s) 279
PspN4I GGNNCC 1 cut(s) 316
PspPI GGNCC 1 cut(s) 315
PvuI CGATCG 1 cut(s) 279
SapI GCTCTTC 1 cut(s) 53
SatI GCNGC 2 cut(s) 129, 144
Sau3AI GATC 3 cut(s) 180, 229, 276
Sau96I GGNCC 1 cut(s) 315
SetI ASST 3 cut(s) 27, 71, 294
SfcI CTRYAG 1 cut(s) 254
Sfr274I CTCGAG 1 cut(s) 293
SlaI CTCGAG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
SsiI CCGC 1 cut(s) 143
SspMI CTAG 1 cut(s) 132
TaqI TCGA 5 cut(s) 94, 244, 275, 279, 294
TaqII GACCGA 1 cut(s) 112
TauI GCSGC 1 cut(s) 146
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 2 cut(s) 17, 75
XhoI CTCGAG 1 cut(s) 293
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.