FvH4_6g18010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000776
Physical Location & Seq
Reverse (-)
11827345 .. 11829354
2010 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g18010.t1

Sequence Viewer

Length: 939 bp
ATGTTGCCACTCTTGAAGAGGAAGTCAAGGCAGGAGACCTTTAAACGTTGCTATGAGCAGGCTGTTCAGCAACTTGGACCAAGGCCGTCCAATCCACCAACTGTGGCTGCTCCTCCCTTGGAATCGTTATCTACTCTGGCTCCCCCAATAATCAGGACTGTCGATCCTCCCCCCAATGCACTGACACCCCCCGAGTGTGAAGGTCATTTGATCAGCGCAAGACAGACTTTTCCAAATGAGAGTTCTAAAAATGAATATAATGTGTTGTTTTGTCGATGCTTGGCTGATCCACCCTTGAAAAGGGCTAAAGGGTTGATAAAAGGCTTAAAAGCCATAGGGATTGTCCGCCGAACGGGAAAGAATATTGAAGTCAAGTATAACGATTCCGTCCATAGACCCGAGACTAAAGAGCTGAATAGTTTGCTTACTAAGGATGTTGGTAGCGTGATCCGTAACTTTGTGGCAATGAACCAACCAACTTGGTGGGAGTTGAAGGAAGAGGAGAGGTTGAAGCTATGTACTGGACTATTGATTTGCTATGAAATCGAATACAACCAAAAGATGTATGACTGGTTAATGAATGTGGCGAACAAGACATACACTTCTTGGAAGGCTAAGCTCCACAAGTTTTTTAAGCATTACAAAGGGGAAAAGGCTCCGAAAGAGTTTGTGCTAGGAGGAAGGAAACTCTCAGCTGCAAACTCGGCAAACCGAGACAAATTAATCATGCATCATGTACCACGCCGTTTTGAGGTGGCGTACGACACCCCACATAACGAGATTGCAGCCGAAAAAGCCAATGAAATGAGACAAAAGGTCCTAACAGTGCTGAGCAAAGAACAGCCGGACATTCCAGAAGATGAGCTCCTTCAACAAATAGACCTCCAATCTCAGCTCGACGCATTTGAGAAGGTCCTTGGGACCAAGGGGGGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

35.6

Weight (kDa)

9.32

Isoelectric Point (pI)

51.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 346
AclI AACGTT 1 cut(s) 46
AclWI GGATC 3 cut(s) 158, 281, 442
AfaI GTAC 3 cut(s) 520, 738, 761
AfiI CCNNNNNNNGG 3 cut(s) 300, 352, 751
AgsI TTSAA 6 cut(s) 16, 298, 368, 493, 511, 872
AhdI GACNNNNNGTC 1 cut(s) 815
AjuI GAANNNNNNNTTGG 2 cut(s) 226, 258
AluBI AGCT 6 cut(s) 412, 514, 619, 695, 865, 895
AluI AGCT 6 cut(s) 412, 514, 619, 695, 865, 895
Alw21I GWGCWC 1 cut(s) 867
Alw26I GTCTC 4 cut(s) 29, 395, 708, 802
AlwI GGATC 3 cut(s) 158, 281, 442
Ama87I CYCGRG 2 cut(s) 191, 398
AoxI GGCC 1 cut(s) 83
ApeKI GCWGC 3 cut(s) 107, 695, 785
ArsI GACNNNNNNTTYG 2 cut(s) 516, 548
AseI ATTAAT 1 cut(s) 722
AspLEI GCGC 1 cut(s) 218
AspS9I GGNCC 4 cut(s) 77, 817, 913, 921
AvaI CYCGRG 2 cut(s) 191, 398
AvaII GGWCC 4 cut(s) 77, 817, 913, 921
BanII GRGCYC 1 cut(s) 867
Bbv12I GWGCWC 1 cut(s) 867
BbvI GCAGC 3 cut(s) 94, 682, 797
BceAI ACGGC 2 cut(s) 70, 729
BclI TGATCA 1 cut(s) 210
BcoDI GTCTC 4 cut(s) 29, 395, 708, 802
BfaI CTAG 1 cut(s) 674
BisI GCNGC 3 cut(s) 108, 696, 786
BlpI GCTNAGC 2 cut(s) 615, 830
BlsI GCNGC 3 cut(s) 109, 697, 787
Bme18I GGWCC 4 cut(s) 77, 817, 913, 921
BmeRI GACNNNNNGTC 1 cut(s) 815
BmeT110I CYCGRG 2 cut(s) 191, 398
BmgT120I GGNCC 4 cut(s) 77, 817, 913, 921
BmiI GGNNCC 3 cut(s) 141, 657, 922
BmsI GCATC 2 cut(s) 266, 739
Bpu1102I GCTNAGC 2 cut(s) 615, 830
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 4 cut(s) 80, 117, 916, 924
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 3 cut(s) 300, 352, 751
Bse1I ACTGG 2 cut(s) 526, 575
Bse3DI GCAATG 1 cut(s) 471
BseDI CCNNGG 4 cut(s) 80, 117, 916, 924
BseGI GGATG 1 cut(s) 439
BseLI CCNNNNNNNGG 3 cut(s) 300, 352, 751
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 3 cut(s) 705, 821, 905
BseNI ACTGG 2 cut(s) 526, 575
BseRI GAGGAG 2 cut(s) 102, 515
BseXI GCAGC 3 cut(s) 94, 682, 797
BshFI GGCC 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 867
BsiHKCI CYCGRG 2 cut(s) 191, 398
BsiSI CCGG 1 cut(s) 845
BsiWI CGTACG 1 cut(s) 759
BslFI GGGAC 1 cut(s) 934
BslI CCNNNNNNNGG 3 cut(s) 300, 352, 751
BsmAI GTCTC 4 cut(s) 29, 395, 708, 802
BsmFI GGGAC 1 cut(s) 934
BsnI GGCC 1 cut(s) 85
Bso31I GGTCTC 1 cut(s) 29
BsoBI CYCGRG 2 cut(s) 191, 398
Bsp1286I GDGCHC 1 cut(s) 867
Bsp143I GATC 4 cut(s) 163, 210, 286, 447
Bsp1720I GCTNAGC 2 cut(s) 615, 830
BspACI CCGC 1 cut(s) 346
BspANI GGCC 1 cut(s) 85
BspCNI CTCAG 3 cut(s) 704, 822, 904
BspLI GGNNCC 3 cut(s) 141, 657, 922
BspPI GGATC 3 cut(s) 158, 281, 442
BspTNI GGTCTC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 471
BsrI ACTGG 2 cut(s) 526, 575
BssECI CCNNGG 4 cut(s) 80, 117, 916, 924
BssMI GATC 4 cut(s) 163, 210, 286, 447
BssT1I CCWWGG 4 cut(s) 80, 117, 916, 924
Bst4CI ACNGT 3 cut(s) 103, 160, 826
Bst6I CTCTTC 2 cut(s) 11, 492
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 5 cut(s) 429, 615, 691, 830, 891
BstENI CCTNNNNNAGG 1 cut(s) 298
BstF5I GGATG 1 cut(s) 439
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 4 cut(s) 166, 213, 289, 450
BstMAI GTCTC 4 cut(s) 29, 395, 708, 802
BstMBI GATC 4 cut(s) 163, 210, 286, 447
BstMWI GCNNNNNNNGC 2 cut(s) 704, 794
BstV1I GCAGC 3 cut(s) 94, 682, 797
BstXI CCANNNNNNTGG 1 cut(s) 483
BsuRI GGCC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 439
BtsIMutI CAGTG 2 cut(s) 179, 831
Cac8I GCNNGC 1 cut(s) 60
CfoI GCGC 1 cut(s) 218
Cfr13I GGNCC 4 cut(s) 77, 817, 913, 921
CseI GACGC 1 cut(s) 908
Csp6I GTAC 3 cut(s) 519, 737, 760
CviAII CATG 2 cut(s) 727, 734
CviQI GTAC 3 cut(s) 519, 737, 760
DdeI CTNAG 5 cut(s) 429, 615, 691, 830, 891
DpnI GATC 4 cut(s) 165, 212, 288, 449
DpnII GATC 4 cut(s) 163, 210, 286, 447
DraI TTTAAA 1 cut(s) 43
DriI GACNNNNNGTC 1 cut(s) 815
Eam1104I CTCTTC 2 cut(s) 11, 492
Eam1105I GACNNNNNGTC 1 cut(s) 815
EarI CTCTTC 2 cut(s) 11, 492
EciI GGCGGA 1 cut(s) 335
Ecl136II GAGCTC 1 cut(s) 865
Eco130I CCWWGG 4 cut(s) 80, 117, 916, 924
Eco24I GRGCYC 1 cut(s) 867
Eco31I GGTCTC 1 cut(s) 29
Eco47I GGWCC 4 cut(s) 77, 817, 913, 921
Eco53kI GAGCTC 1 cut(s) 865
Eco88I CYCGRG 2 cut(s) 191, 398
EcoICRI GAGCTC 1 cut(s) 865
EcoNI CCTNNNNNAGG 1 cut(s) 298
EcoO109I RGGNCCY 2 cut(s) 817, 913
EcoT14I CCWWGG 4 cut(s) 80, 117, 916, 924
EcoT22I ATGCAT 1 cut(s) 732
EcoT38I GRGCYC 1 cut(s) 867
ErhI CCWWGG 4 cut(s) 80, 117, 916, 924
FaeI CATG 2 cut(s) 730, 737
FalI AAGNNNNNCTT 2 cut(s) 211, 243
FaqI GGGAC 1 cut(s) 934
FatI CATG 2 cut(s) 726, 733
FbaI TGATCA 1 cut(s) 210
Fnu4HI GCNGC 3 cut(s) 108, 696, 786
FokI GGATG 1 cut(s) 446
FriOI GRGCYC 1 cut(s) 867
Fsp4HI GCNGC 3 cut(s) 108, 696, 786
FspBI CTAG 1 cut(s) 674
GlaI GCGC 1 cut(s) 217
GluI GCNGC 3 cut(s) 108, 696, 786
HaeIII GGCC 1 cut(s) 85
HapII CCGG 1 cut(s) 845
HgaI GACGC 1 cut(s) 908
HhaI GCGC 1 cut(s) 218
Hin1II CATG 2 cut(s) 730, 737
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HinfI GANTC 2 cut(s) 122, 383
HpaII CCGG 1 cut(s) 845
Hpy188I TCNGA 1 cut(s) 660
Hpy188III TCNNGA 3 cut(s) 13, 154, 854
Hpy99I CGWCG 1 cut(s) 902
HpyAV CCTTC 6 cut(s) 194, 487, 604, 675, 878, 904
HpyCH4III ACNGT 3 cut(s) 103, 160, 826
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 4 cut(s) 179, 698, 730, 785
HpyF10VI GCNNNNNNNGC 2 cut(s) 704, 794
HpyF3I CTNAG 5 cut(s) 429, 615, 691, 830, 891
HpySE526I ACGT 1 cut(s) 46
Hsp92II CATG 2 cut(s) 730, 737
HspAI GCGC 1 cut(s) 216
Ksp22I TGATCA 1 cut(s) 210
Kzo9I GATC 4 cut(s) 163, 210, 286, 447
LmnI GCTCC 5 cut(s) 115, 145, 624, 661, 870
LpnPI CCDG 8 cut(s) 17, 44, 122, 139, 507, 556, 858, 867
Lsp1109I GCAGC 3 cut(s) 94, 682, 797
LweI GCATC 2 cut(s) 266, 739
MaeI CTAG 1 cut(s) 674
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 1 cut(s) 452
MalI GATC 4 cut(s) 165, 212, 288, 449
MboI GATC 4 cut(s) 163, 210, 286, 447
MboII GAAGA 3 cut(s) 28, 509, 869
MhlI GDGCHC 1 cut(s) 867
MluCI AATT 1 cut(s) 719
MnlI CCTC 8 cut(s) 12, 123, 177, 493, 498, 671, 745, 893
Mph1103I ATGCAT 1 cut(s) 732
MseI TTAA 5 cut(s) 42, 326, 575, 633, 722
MspA1I CMGCKG 1 cut(s) 695
MspI CCGG 1 cut(s) 845
MwoI GCNNNNNNNGC 2 cut(s) 704, 794
NdeII GATC 4 cut(s) 163, 210, 286, 447
NlaIII CATG 2 cut(s) 730, 737
NlaIV GGNNCC 3 cut(s) 141, 657, 922
NmeAIII GCCGAG 1 cut(s) 683
NsiI ATGCAT 1 cut(s) 732
PfeI GAWTC 2 cut(s) 122, 383
Pfl23II CGTACG 1 cut(s) 759
PkrI GCNGC 3 cut(s) 109, 697, 787
PpuMI RGGWCCY 2 cut(s) 817, 913
PshBI ATTAAT 1 cut(s) 722
Psp124BI GAGCTC 1 cut(s) 867
Psp1406I AACGTT 1 cut(s) 46
Psp5II RGGWCCY 2 cut(s) 817, 913
PspLI CGTACG 1 cut(s) 759
PspN4I GGNNCC 3 cut(s) 141, 657, 922
PspPI GGNCC 4 cut(s) 77, 817, 913, 921
PspPPI RGGWCCY 2 cut(s) 817, 913
PsrI GAACNNNNNNTAC 2 cut(s) 581, 613
PvuII CAGCTG 1 cut(s) 695
RsaI GTAC 3 cut(s) 520, 738, 761
RsaNI GTAC 3 cut(s) 519, 737, 760
SacI GAGCTC 1 cut(s) 867
SaqAI TTAA 5 cut(s) 42, 326, 575, 633, 722
SatI GCNGC 3 cut(s) 108, 696, 786
Sau3AI GATC 4 cut(s) 163, 210, 286, 447
Sau96I GGNCC 4 cut(s) 77, 817, 913, 921
SduI GDGCHC 1 cut(s) 867
SfaNI GCATC 2 cut(s) 266, 739
SinI GGWCC 4 cut(s) 77, 817, 913, 921
Sse9I AATT 1 cut(s) 719
SsiI CCGC 1 cut(s) 346
SspI AATATT 1 cut(s) 364
SspMI CTAG 1 cut(s) 674
SstI GAGCTC 1 cut(s) 867
StyI CCWWGG 4 cut(s) 80, 117, 916, 924
TaaI ACNGT 3 cut(s) 103, 160, 826
TaiI ACGT 1 cut(s) 49
TaqI TCGA 4 cut(s) 162, 274, 546, 897
TasI AATT 1 cut(s) 719
TatI WGTACW 1 cut(s) 518
TfiI GAWTC 2 cut(s) 122, 383
Tru1I TTAA 5 cut(s) 42, 326, 575, 633, 722
Tru9I TTAA 5 cut(s) 42, 326, 575, 633, 722
TscAI CASTG 2 cut(s) 186, 831
TseI GCWGC 3 cut(s) 107, 695, 785
TspDTI ATGAA 5 cut(s) 267, 482, 555, 593, 816
TspGWI ACGGA 2 cut(s) 376, 440
TspRI CASTG 2 cut(s) 186, 831
VpaK11BI GGWCC 4 cut(s) 77, 817, 913, 921
VspI ATTAAT 1 cut(s) 722
XagI CCTNNNNNAGG 1 cut(s) 298
XspI CTAG 1 cut(s) 674
Zsp2I ATGCAT 1 cut(s) 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.