transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 813 |
| AciI | CCGC | 4 cut(s) | 5, 223, 343, 1009 |
| AclI | AACGTT | 1 cut(s) | 46 |
| AclWI | GGATC | 4 cut(s) | 158, 277, 439, 985 |
| AcuI | CTGAAG | 2 cut(s) | 509, 527 |
| AfaI | GTAC | 2 cut(s) | 517, 1053 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 239, 349, 925, 967 |
| AflII | CTTAAG | 1 cut(s) | 701 |
| AgsI | TTSAA | 2 cut(s) | 365, 806 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 226, 258 |
| AluBI | AGCT | 6 cut(s) | 409, 487, 511, 616, 799, 829 |
| AluI | AGCT | 6 cut(s) | 409, 487, 511, 616, 799, 829 |
| Alw21I | GWGCWC | 1 cut(s) | 801 |
| Alw26I | GTCTC | 1 cut(s) | 736 |
| AlwI | GGATC | 4 cut(s) | 158, 277, 439, 985 |
| Ama87I | CYCGRG | 2 cut(s) | 191, 960 |
| AoxI | GGCC | 4 cut(s) | 83, 319, 969, 1060 |
| ApeKI | GCWGC | 3 cut(s) | 107, 854, 1042 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 324, 356, 513, 545 |
| AspLEI | GCGC | 2 cut(s) | 218, 1008 |
| AspS9I | GGNCC | 3 cut(s) | 77, 203, 392 |
| AsuC2I | CCSGG | 2 cut(s) | 961, 962 |
| AsuHPI | GGTGA | 1 cut(s) | 711 |
| AvaI | CYCGRG | 2 cut(s) | 191, 960 |
| AvaII | GGWCC | 3 cut(s) | 77, 203, 392 |
| BanII | GRGCYC | 1 cut(s) | 801 |
| BbsI | GAAGAC | 1 cut(s) | 23 |
| Bbv12I | GWGCWC | 1 cut(s) | 801 |
| BbvI | GCAGC | 3 cut(s) | 94, 866, 1054 |
| BccI | CCATC | 1 cut(s) | 676 |
| BceAI | ACGGC | 1 cut(s) | 947 |
| BcnI | CCSGG | 2 cut(s) | 961, 962 |
| BcoDI | GTCTC | 1 cut(s) | 736 |
| BfoI | RGCGCY | 1 cut(s) | 1009 |
| BfrI | CTTAAG | 1 cut(s) | 701 |
| BisI | GCNGC | 5 cut(s) | 5, 108, 855, 1009, 1043 |
| BlpI | GCTNAGC | 1 cut(s) | 764 |
| BlsI | GCNGC | 5 cut(s) | 6, 109, 856, 1010, 1044 |
| Bme1390I | CCNGG | 2 cut(s) | 961, 962 |
| Bme18I | GGWCC | 3 cut(s) | 77, 203, 392 |
| BmeT110I | CYCGRG | 2 cut(s) | 191, 960 |
| BmgT120I | GGNCC | 3 cut(s) | 77, 203, 392 |
| BmiI | GGNNCC | 4 cut(s) | 141, 205, 394, 654 |
| BmrFI | CCNGG | 2 cut(s) | 961, 962 |
| BmsI | GCATC | 1 cut(s) | 1069 |
| BpiI | GAAGAC | 1 cut(s) | 23 |
| Bpu10I | CCTNAGC | 1 cut(s) | 939 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 764 |
| BpuEI | CTTGAG | 1 cut(s) | 908 |
| BpuMI | CCSGG | 2 cut(s) | 961, 962 |
| Bsa29I | ATCGAT | 1 cut(s) | 527 |
| BsaJI | CCNNGG | 3 cut(s) | 80, 388, 960 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 239, 349, 925, 967 |
| Bse1I | ACTGG | 2 cut(s) | 523, 572 |
| Bse3DI | GCAATG | 1 cut(s) | 468 |
| BseCI | ATCGAT | 1 cut(s) | 527 |
| BseDI | CCNNGG | 3 cut(s) | 80, 388, 960 |
| BseGI | GGATG | 3 cut(s) | 687, 691, 799 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 239, 349, 925, 967 |
| BseMI | GCAATG | 1 cut(s) | 468 |
| BseMII | CTCAG | 3 cut(s) | 737, 839, 953 |
| BseNI | ACTGG | 2 cut(s) | 523, 572 |
| BseRI | GAGGAG | 6 cut(s) | 102, 132, 512, 905, 938, 959 |
| BseXI | GCAGC | 3 cut(s) | 94, 866, 1054 |
| BsgI | GTGCAG | 1 cut(s) | 1055 |
| BshFI | GGCC | 4 cut(s) | 85, 321, 971, 1062 |
| BshVI | ATCGAT | 1 cut(s) | 527 |
| BsiHKAI | GWGCWC | 1 cut(s) | 801 |
| BsiHKCI | CYCGRG | 2 cut(s) | 191, 960 |
| BsiSI | CCGG | 2 cut(s) | 779, 961 |
| BslFI | GGGAC | 2 cut(s) | 189, 855 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 239, 349, 925, 967 |
| BsmAI | GTCTC | 1 cut(s) | 736 |
| BsmFI | GGGAC | 2 cut(s) | 189, 855 |
| BsnI | GGCC | 4 cut(s) | 85, 321, 971, 1062 |
| BsoBI | CYCGRG | 2 cut(s) | 191, 960 |
| Bsp1286I | GDGCHC | 1 cut(s) | 801 |
| Bsp143I | GATC | 4 cut(s) | 163, 282, 444, 990 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 764 |
| Bsp19I | CCATGG | 1 cut(s) | 388 |
| BspACI | CCGC | 4 cut(s) | 5, 223, 343, 1009 |
| BspANI | GGCC | 4 cut(s) | 85, 321, 971, 1062 |
| BspCNI | CTCAG | 3 cut(s) | 736, 838, 952 |
| BspDI | ATCGAT | 1 cut(s) | 527 |
| BspHI | TCATGA | 1 cut(s) | 12 |
| BspLI | GGNNCC | 4 cut(s) | 141, 205, 394, 654 |
| BspPI | GGATC | 4 cut(s) | 158, 277, 439, 985 |
| BspTI | CTTAAG | 1 cut(s) | 701 |
| BsrDI | GCAATG | 1 cut(s) | 468 |
| BsrI | ACTGG | 2 cut(s) | 523, 572 |
| BssECI | CCNNGG | 3 cut(s) | 80, 388, 960 |
| BssMI | GATC | 4 cut(s) | 163, 282, 444, 990 |
| BssT1I | CCWWGG | 2 cut(s) | 80, 388 |
| Bst4CI | ACNGT | 2 cut(s) | 103, 416 |
| Bst6I | CTCTTC | 2 cut(s) | 327, 489 |
| BstAFI | CTTAAG | 1 cut(s) | 701 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 935 |
| BstC8I | GCNNGC | 6 cut(s) | 60, 87, 225, 906, 936, 969 |
| BstDEI | CTNAG | 6 cut(s) | 118, 426, 723, 764, 825, 939 |
| BstDSI | CCRYGG | 1 cut(s) | 388 |
| BstF5I | GGATG | 3 cut(s) | 687, 691, 799 |
| BstH2I | RGCGCY | 1 cut(s) | 1009 |
| BstHHI | GCGC | 2 cut(s) | 218, 1008 |
| BstKTI | GATC | 4 cut(s) | 166, 285, 447, 993 |
| BstMAI | GTCTC | 1 cut(s) | 736 |
| BstMBI | GATC | 4 cut(s) | 163, 282, 444, 990 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 224, 590, 914, 935, 956, 977, 1042 |
| BstNSI | RCATGY | 2 cut(s) | 908, 938 |
| BstSCI | CCNGG | 2 cut(s) | 959, 960 |
| BstV1I | GCAGC | 3 cut(s) | 94, 866, 1054 |
| BstV2I | GAAGAC | 1 cut(s) | 23 |
| BstX2I | RGATCY | 2 cut(s) | 282, 990 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 480 |
| BstYI | RGATCY | 2 cut(s) | 282, 990 |
| Bsu15I | ATCGAT | 1 cut(s) | 527 |
| BsuRI | GGCC | 4 cut(s) | 85, 321, 971, 1062 |
| BsuTUI | ATCGAT | 1 cut(s) | 527 |
| BtgI | CCRYGG | 1 cut(s) | 388 |
| BtsCI | GGATG | 3 cut(s) | 687, 691, 799 |
| Cac8I | GCNNGC | 6 cut(s) | 60, 87, 225, 906, 936, 969 |
| CciI | TCATGA | 1 cut(s) | 12 |
| CfoI | GCGC | 2 cut(s) | 218, 1008 |
| Cfr13I | GGNCC | 3 cut(s) | 77, 203, 392 |
| Cfr9I | CCCGGG | 1 cut(s) | 960 |
| ClaI | ATCGAT | 1 cut(s) | 527 |
| CseI | GACGC | 1 cut(s) | 842 |
| Csp6I | GTAC | 2 cut(s) | 516, 1052 |
| CviAII | CATG | 4 cut(s) | 13, 389, 905, 935 |
| CviQI | GTAC | 2 cut(s) | 516, 1052 |
| DdeI | CTNAG | 6 cut(s) | 118, 426, 723, 764, 825, 939 |
| DpnI | GATC | 4 cut(s) | 165, 284, 446, 992 |
| DpnII | GATC | 4 cut(s) | 163, 282, 444, 990 |
| DraI | TTTAAA | 1 cut(s) | 43 |
| Eam1104I | CTCTTC | 2 cut(s) | 327, 489 |
| EarI | CTCTTC | 2 cut(s) | 327, 489 |
| EciI | GGCGGA | 1 cut(s) | 332 |
| Ecl136II | GAGCTC | 1 cut(s) | 799 |
| Eco130I | CCWWGG | 2 cut(s) | 80, 388 |
| Eco147I | AGGCCT | 1 cut(s) | 321 |
| Eco24I | GRGCYC | 1 cut(s) | 801 |
| Eco47I | GGWCC | 3 cut(s) | 77, 203, 392 |
| Eco53kI | GAGCTC | 1 cut(s) | 799 |
| Eco57I | CTGAAG | 2 cut(s) | 509, 527 |
| Eco88I | CYCGRG | 2 cut(s) | 191, 960 |
| EcoICRI | GAGCTC | 1 cut(s) | 799 |
| EcoO109I | RGGNCCY | 1 cut(s) | 203 |
| EcoT14I | CCWWGG | 2 cut(s) | 80, 388 |
| EcoT38I | GRGCYC | 1 cut(s) | 801 |
| ErhI | CCWWGG | 2 cut(s) | 80, 388 |
| FaeI | CATG | 4 cut(s) | 16, 392, 908, 938 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 211, 243, 695, 727 |
| FaqI | GGGAC | 2 cut(s) | 189, 855 |
| FatI | CATG | 4 cut(s) | 12, 388, 904, 934 |
| FauI | CCCGC | 1 cut(s) | 216 |
| FblI | GTMKAC | 1 cut(s) | 813 |
| Fnu4HI | GCNGC | 5 cut(s) | 5, 108, 855, 1009, 1043 |
| FokI | GGATG | 3 cut(s) | 694, 698, 806 |
| FriOI | GRGCYC | 1 cut(s) | 801 |
| Fsp4HI | GCNGC | 5 cut(s) | 5, 108, 855, 1009, 1043 |
| GlaI | GCGC | 2 cut(s) | 217, 1007 |
| GluI | GCNGC | 5 cut(s) | 5, 108, 855, 1009, 1043 |
| HaeII | RGCGCY | 1 cut(s) | 1009 |
| HaeIII | GGCC | 4 cut(s) | 85, 321, 971, 1062 |
| HapII | CCGG | 2 cut(s) | 779, 961 |
| HgaI | GACGC | 1 cut(s) | 842 |
| HhaI | GCGC | 2 cut(s) | 218, 1008 |
| Hin1II | CATG | 4 cut(s) | 16, 392, 908, 938 |
| Hin6I | GCGC | 2 cut(s) | 216, 1006 |
| HinP1I | GCGC | 2 cut(s) | 216, 1006 |
| HinfI | GANTC | 2 cut(s) | 122, 380 |
| HpaII | CCGG | 2 cut(s) | 779, 961 |
| HphI | GGTGA | 1 cut(s) | 711 |
| Hpy166II | GTNNAC | 1 cut(s) | 814 |
| Hpy188I | TCNGA | 2 cut(s) | 247, 732 |
| Hpy188III | TCNNGA | 6 cut(s) | 13, 154, 887, 899, 941, 1070 |
| Hpy8I | GTNNAC | 1 cut(s) | 814 |
| HpyAV | CCTTC | 8 cut(s) | 194, 484, 571, 601, 672, 812, 838, 1052 |
| HpyCH4III | ACNGT | 2 cut(s) | 103, 416 |
| HpyCH4IV | ACGT | 1 cut(s) | 46 |
| HpyCH4V | TGCA | 3 cut(s) | 179, 670, 1036 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 224, 590, 914, 935, 956, 977, 1042 |
| HpyF3I | CTNAG | 6 cut(s) | 118, 426, 723, 764, 825, 939 |
| HpySE526I | ACGT | 1 cut(s) | 46 |
| Hsp92II | CATG | 4 cut(s) | 16, 392, 908, 938 |
| HspAI | GCGC | 2 cut(s) | 216, 1006 |
| Kzo9I | GATC | 4 cut(s) | 163, 282, 444, 990 |
| LmnI | GCTCC | 8 cut(s) | 115, 145, 484, 621, 658, 804, 901, 964 |
| Lsp1109I | GCAGC | 3 cut(s) | 94, 866, 1054 |
| LweI | GCATC | 1 cut(s) | 1069 |
| MaeII | ACGT | 1 cut(s) | 46 |
| MaeIII | GTNAC | 2 cut(s) | 449, 717 |
| MalI | GATC | 4 cut(s) | 165, 284, 446, 992 |
| MboI | GATC | 4 cut(s) | 163, 282, 444, 990 |
| MboII | GAAGA | 5 cut(s) | 28, 344, 367, 506, 1000 |
| MflI | RGATCY | 2 cut(s) | 282, 990 |
| MhlI | GDGCHC | 1 cut(s) | 801 |
| MluCI | AATT | 1 cut(s) | 694 |
| MmeI | TCCRAC | 1 cut(s) | 1002 |
| MseI | TTAA | 4 cut(s) | 42, 572, 630, 702 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1016 |
| MspCI | CTTAAG | 1 cut(s) | 701 |
| MspI | CCGG | 2 cut(s) | 779, 961 |
| MspR9I | CCNGG | 2 cut(s) | 961, 962 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 224, 590, 914, 935, 956, 977, 1042 |
| NciI | CCSGG | 2 cut(s) | 961, 962 |
| NcoI | CCATGG | 1 cut(s) | 388 |
| NdeII | GATC | 4 cut(s) | 163, 282, 444, 990 |
| NlaIII | CATG | 4 cut(s) | 16, 392, 908, 938 |
| NlaIV | GGNNCC | 4 cut(s) | 141, 205, 394, 654 |
| NmeAIII | GCCGAG | 1 cut(s) | 1071 |
| NmuCI | GTSAC | 1 cut(s) | 717 |
| NspI | RCATGY | 2 cut(s) | 908, 938 |
| PaeI | GCATGC | 2 cut(s) | 908, 938 |
| PagI | TCATGA | 1 cut(s) | 12 |
| PceI | AGGCCT | 1 cut(s) | 321 |
| PfeI | GAWTC | 2 cut(s) | 122, 380 |
| PflFI | GACNNNGTC | 1 cut(s) | 22 |
| PkrI | GCNGC | 5 cut(s) | 6, 109, 856, 1010, 1044 |
| PpuMI | RGGWCCY | 1 cut(s) | 203 |
| Psp124BI | GAGCTC | 1 cut(s) | 801 |
| Psp1406I | AACGTT | 1 cut(s) | 46 |
| Psp5II | RGGWCCY | 1 cut(s) | 203 |
| PspN4I | GGNNCC | 4 cut(s) | 141, 205, 394, 654 |
| PspPI | GGNCC | 3 cut(s) | 77, 203, 392 |
| PspPPI | RGGWCCY | 1 cut(s) | 203 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 578, 610 |
| PsuI | RGATCY | 2 cut(s) | 282, 990 |
| PsyI | GACNNNGTC | 1 cut(s) | 22 |
| RsaI | GTAC | 2 cut(s) | 517, 1053 |
| RsaNI | GTAC | 2 cut(s) | 516, 1052 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1016 |
| SacI | GAGCTC | 1 cut(s) | 801 |
| SaqAI | TTAA | 4 cut(s) | 42, 572, 630, 702 |
| SatI | GCNGC | 5 cut(s) | 5, 108, 855, 1009, 1043 |
| Sau3AI | GATC | 4 cut(s) | 163, 282, 444, 990 |
| Sau96I | GGNCC | 3 cut(s) | 77, 203, 392 |
| ScrFI | CCNGG | 2 cut(s) | 961, 962 |
| SduI | GDGCHC | 1 cut(s) | 801 |
| SfaNI | GCATC | 1 cut(s) | 1069 |
| SinI | GGWCC | 3 cut(s) | 77, 203, 392 |
| SmaI | CCCGGG | 1 cut(s) | 962 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1016 |
| SmlI | CTYRAG | 3 cut(s) | 701, 887, 1070 |
| SmoI | CTYRAG | 3 cut(s) | 701, 887, 1070 |
| SphI | GCATGC | 2 cut(s) | 908, 938 |
| Sse9I | AATT | 1 cut(s) | 694 |
| SseBI | AGGCCT | 1 cut(s) | 321 |
| SsiI | CCGC | 4 cut(s) | 5, 223, 343, 1009 |
| SspI | AATATT | 1 cut(s) | 361 |
| SstI | GAGCTC | 1 cut(s) | 801 |
| StuI | AGGCCT | 1 cut(s) | 321 |
| StyD4I | CCNGG | 2 cut(s) | 959, 960 |
| StyI | CCWWGG | 2 cut(s) | 80, 388 |
| TaaI | ACNGT | 2 cut(s) | 103, 416 |
| TaiI | ACGT | 1 cut(s) | 49 |
| TaqI | TCGA | 2 cut(s) | 527, 543 |
| TasI | AATT | 1 cut(s) | 694 |
| TatI | WGTACW | 1 cut(s) | 515 |
| TauI | GCSGC | 2 cut(s) | 7, 1011 |
| TfiI | GAWTC | 2 cut(s) | 122, 380 |
| Tru1I | TTAA | 4 cut(s) | 42, 572, 630, 702 |
| Tru9I | TTAA | 4 cut(s) | 42, 572, 630, 702 |
| TseFI | GTSAC | 1 cut(s) | 717 |
| TseI | GCWGC | 3 cut(s) | 107, 854, 1042 |
| Tsp45I | GTSAC | 1 cut(s) | 717 |
| TspDTI | ATGAA | 4 cut(s) | 29, 479, 552, 590 |
| TspGWI | ACGGA | 1 cut(s) | 437 |
| TspMI | CCCGGG | 1 cut(s) | 960 |
| Tth111I | GACNNNGTC | 1 cut(s) | 22 |
| Vha464I | CTTAAG | 1 cut(s) | 701 |
| VpaK11BI | GGWCC | 3 cut(s) | 77, 203, 392 |
| XceI | RCATGY | 2 cut(s) | 908, 938 |
| XmaI | CCCGGG | 1 cut(s) | 960 |
| XmiI | GTMKAC | 1 cut(s) | 813 |