FvH4_6g34820

transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
27474997 .. 27477232
2236 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g34820.t1

Sequence Viewer

Length: 1086 bp
ATGCCGCCACTCATGAAGACGAAGTCAAGGCAGGAGGCTTTTAAACGTTGCTATGAGCAGGCTGTTCAGCAACTTGGACCAAGGCCAGCCAACCCACCAACTGTGGCTGCTCCTCCCTTAGAATCGTTATCTGCTTTGGCTCCTCCAATAATCAGGACTGCCGATCCTCCCCCCAATGCACCGACACCCCCCGAGTGTGAAGGTCCCTTGATTAGCGCAAGGCGGGCTTTTCCAAAGGAGGGTTCTGAAAATGTAATGTGTTGTTTTGTCGGTGTTTGGCAGATCCACCCAAGAAAAAGGGCTAAAGGGTTGATAAAAGGCCTAAAAGCCGAAGAGATTGTCCGCCGAACGGGGAAGAATATTGAAGTCAAGTATAACGATTCTGTCCATGGACCCCAGACTAAAGAGCTGAACAGTTTGCTTACTAAGGATATTGGTAGAGTGATCCGTAACTCTGTGGCAATGAACCAACCAACTTGGTGGGAGCTGAAGGAAGAGGAGAGGCTGAAGCTATGTACTGGACTATCGATTTGCTATGAAATCGAATACAACCAAAAGATGTATGACTGGTTAATGAAGGTGGCGAACAAGGCATACACTTCTTGGAAGGGTAAGCTCCACAAGTTTTTTAAGCATTACAAAGGGGAAAAGGCTCCAAAAGAGTTTGTGCAAGGAGGAAGGATGGATGAGTGGAATTGGCTTAAGCAACACTTCTTGTCACCTCAGTTTCAGAACGATATGAGACAGAAAATCCTAACAATGCTAAGCGAACAACAGCCGGACACTCCAAAGGATGAGCTCCTTCAACAAGTAGACCTCCAATCTCAGCTTGACGCATTTGAGAAGGGAAAAGCAGCAAGGCGTTCTCGTCCCAATGATATAGTTCTTGAGGAGGTTCGGGAGCATGCCCGACAAGCCCAAGAGGAGGCACGGCATGCTCAGGAGGAGGCACAACAAGCCCGGGAGCAGGCCAAAGTAGCCCAAGAGAAGATCCTTGATTATGAGCGCCGCATACAAATGTTGGAGAAGTTTGTGCAGTCGCAGCCGAGCGTACAAGAAGGCCAACATCTTGAGGTTGATGCTTGA

Protein Analysis

362

Amino Acids

41.64

Weight (kDa)

8.94

Isoelectric Point (pI)

58.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 813
AciI CCGC 4 cut(s) 5, 223, 343, 1009
AclI AACGTT 1 cut(s) 46
AclWI GGATC 4 cut(s) 158, 277, 439, 985
AcuI CTGAAG 2 cut(s) 509, 527
AfaI GTAC 2 cut(s) 517, 1053
AfiI CCNNNNNNNGG 4 cut(s) 239, 349, 925, 967
AflII CTTAAG 1 cut(s) 701
AgsI TTSAA 2 cut(s) 365, 806
AjuI GAANNNNNNNTTGG 2 cut(s) 226, 258
AluBI AGCT 6 cut(s) 409, 487, 511, 616, 799, 829
AluI AGCT 6 cut(s) 409, 487, 511, 616, 799, 829
Alw21I GWGCWC 1 cut(s) 801
Alw26I GTCTC 1 cut(s) 736
AlwI GGATC 4 cut(s) 158, 277, 439, 985
Ama87I CYCGRG 2 cut(s) 191, 960
AoxI GGCC 4 cut(s) 83, 319, 969, 1060
ApeKI GCWGC 3 cut(s) 107, 854, 1042
ArsI GACNNNNNNTTYG 4 cut(s) 324, 356, 513, 545
AspLEI GCGC 2 cut(s) 218, 1008
AspS9I GGNCC 3 cut(s) 77, 203, 392
AsuC2I CCSGG 2 cut(s) 961, 962
AsuHPI GGTGA 1 cut(s) 711
AvaI CYCGRG 2 cut(s) 191, 960
AvaII GGWCC 3 cut(s) 77, 203, 392
BanII GRGCYC 1 cut(s) 801
BbsI GAAGAC 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 801
BbvI GCAGC 3 cut(s) 94, 866, 1054
BccI CCATC 1 cut(s) 676
BceAI ACGGC 1 cut(s) 947
BcnI CCSGG 2 cut(s) 961, 962
BcoDI GTCTC 1 cut(s) 736
BfoI RGCGCY 1 cut(s) 1009
BfrI CTTAAG 1 cut(s) 701
BisI GCNGC 5 cut(s) 5, 108, 855, 1009, 1043
BlpI GCTNAGC 1 cut(s) 764
BlsI GCNGC 5 cut(s) 6, 109, 856, 1010, 1044
Bme1390I CCNGG 2 cut(s) 961, 962
Bme18I GGWCC 3 cut(s) 77, 203, 392
BmeT110I CYCGRG 2 cut(s) 191, 960
BmgT120I GGNCC 3 cut(s) 77, 203, 392
BmiI GGNNCC 4 cut(s) 141, 205, 394, 654
BmrFI CCNGG 2 cut(s) 961, 962
BmsI GCATC 1 cut(s) 1069
BpiI GAAGAC 1 cut(s) 23
Bpu10I CCTNAGC 1 cut(s) 939
Bpu1102I GCTNAGC 1 cut(s) 764
BpuEI CTTGAG 1 cut(s) 908
BpuMI CCSGG 2 cut(s) 961, 962
Bsa29I ATCGAT 1 cut(s) 527
BsaJI CCNNGG 3 cut(s) 80, 388, 960
Bsc4I CCNNNNNNNGG 4 cut(s) 239, 349, 925, 967
Bse1I ACTGG 2 cut(s) 523, 572
Bse3DI GCAATG 1 cut(s) 468
BseCI ATCGAT 1 cut(s) 527
BseDI CCNNGG 3 cut(s) 80, 388, 960
BseGI GGATG 3 cut(s) 687, 691, 799
BseLI CCNNNNNNNGG 4 cut(s) 239, 349, 925, 967
BseMI GCAATG 1 cut(s) 468
BseMII CTCAG 3 cut(s) 737, 839, 953
BseNI ACTGG 2 cut(s) 523, 572
BseRI GAGGAG 6 cut(s) 102, 132, 512, 905, 938, 959
BseXI GCAGC 3 cut(s) 94, 866, 1054
BsgI GTGCAG 1 cut(s) 1055
BshFI GGCC 4 cut(s) 85, 321, 971, 1062
BshVI ATCGAT 1 cut(s) 527
BsiHKAI GWGCWC 1 cut(s) 801
BsiHKCI CYCGRG 2 cut(s) 191, 960
BsiSI CCGG 2 cut(s) 779, 961
BslFI GGGAC 2 cut(s) 189, 855
BslI CCNNNNNNNGG 4 cut(s) 239, 349, 925, 967
BsmAI GTCTC 1 cut(s) 736
BsmFI GGGAC 2 cut(s) 189, 855
BsnI GGCC 4 cut(s) 85, 321, 971, 1062
BsoBI CYCGRG 2 cut(s) 191, 960
Bsp1286I GDGCHC 1 cut(s) 801
Bsp143I GATC 4 cut(s) 163, 282, 444, 990
Bsp1720I GCTNAGC 1 cut(s) 764
Bsp19I CCATGG 1 cut(s) 388
BspACI CCGC 4 cut(s) 5, 223, 343, 1009
BspANI GGCC 4 cut(s) 85, 321, 971, 1062
BspCNI CTCAG 3 cut(s) 736, 838, 952
BspDI ATCGAT 1 cut(s) 527
BspHI TCATGA 1 cut(s) 12
BspLI GGNNCC 4 cut(s) 141, 205, 394, 654
BspPI GGATC 4 cut(s) 158, 277, 439, 985
BspTI CTTAAG 1 cut(s) 701
BsrDI GCAATG 1 cut(s) 468
BsrI ACTGG 2 cut(s) 523, 572
BssECI CCNNGG 3 cut(s) 80, 388, 960
BssMI GATC 4 cut(s) 163, 282, 444, 990
BssT1I CCWWGG 2 cut(s) 80, 388
Bst4CI ACNGT 2 cut(s) 103, 416
Bst6I CTCTTC 2 cut(s) 327, 489
BstAFI CTTAAG 1 cut(s) 701
BstAPI GCANNNNNTGC 1 cut(s) 935
BstC8I GCNNGC 6 cut(s) 60, 87, 225, 906, 936, 969
BstDEI CTNAG 6 cut(s) 118, 426, 723, 764, 825, 939
BstDSI CCRYGG 1 cut(s) 388
BstF5I GGATG 3 cut(s) 687, 691, 799
BstH2I RGCGCY 1 cut(s) 1009
BstHHI GCGC 2 cut(s) 218, 1008
BstKTI GATC 4 cut(s) 166, 285, 447, 993
BstMAI GTCTC 1 cut(s) 736
BstMBI GATC 4 cut(s) 163, 282, 444, 990
BstMWI GCNNNNNNNGC 7 cut(s) 224, 590, 914, 935, 956, 977, 1042
BstNSI RCATGY 2 cut(s) 908, 938
BstSCI CCNGG 2 cut(s) 959, 960
BstV1I GCAGC 3 cut(s) 94, 866, 1054
BstV2I GAAGAC 1 cut(s) 23
BstX2I RGATCY 2 cut(s) 282, 990
BstXI CCANNNNNNTGG 1 cut(s) 480
BstYI RGATCY 2 cut(s) 282, 990
Bsu15I ATCGAT 1 cut(s) 527
BsuRI GGCC 4 cut(s) 85, 321, 971, 1062
BsuTUI ATCGAT 1 cut(s) 527
BtgI CCRYGG 1 cut(s) 388
BtsCI GGATG 3 cut(s) 687, 691, 799
Cac8I GCNNGC 6 cut(s) 60, 87, 225, 906, 936, 969
CciI TCATGA 1 cut(s) 12
CfoI GCGC 2 cut(s) 218, 1008
Cfr13I GGNCC 3 cut(s) 77, 203, 392
Cfr9I CCCGGG 1 cut(s) 960
ClaI ATCGAT 1 cut(s) 527
CseI GACGC 1 cut(s) 842
Csp6I GTAC 2 cut(s) 516, 1052
CviAII CATG 4 cut(s) 13, 389, 905, 935
CviQI GTAC 2 cut(s) 516, 1052
DdeI CTNAG 6 cut(s) 118, 426, 723, 764, 825, 939
DpnI GATC 4 cut(s) 165, 284, 446, 992
DpnII GATC 4 cut(s) 163, 282, 444, 990
DraI TTTAAA 1 cut(s) 43
Eam1104I CTCTTC 2 cut(s) 327, 489
EarI CTCTTC 2 cut(s) 327, 489
EciI GGCGGA 1 cut(s) 332
Ecl136II GAGCTC 1 cut(s) 799
Eco130I CCWWGG 2 cut(s) 80, 388
Eco147I AGGCCT 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 801
Eco47I GGWCC 3 cut(s) 77, 203, 392
Eco53kI GAGCTC 1 cut(s) 799
Eco57I CTGAAG 2 cut(s) 509, 527
Eco88I CYCGRG 2 cut(s) 191, 960
EcoICRI GAGCTC 1 cut(s) 799
EcoO109I RGGNCCY 1 cut(s) 203
EcoT14I CCWWGG 2 cut(s) 80, 388
EcoT38I GRGCYC 1 cut(s) 801
ErhI CCWWGG 2 cut(s) 80, 388
FaeI CATG 4 cut(s) 16, 392, 908, 938
FalI AAGNNNNNCTT 4 cut(s) 211, 243, 695, 727
FaqI GGGAC 2 cut(s) 189, 855
FatI CATG 4 cut(s) 12, 388, 904, 934
FauI CCCGC 1 cut(s) 216
FblI GTMKAC 1 cut(s) 813
Fnu4HI GCNGC 5 cut(s) 5, 108, 855, 1009, 1043
FokI GGATG 3 cut(s) 694, 698, 806
FriOI GRGCYC 1 cut(s) 801
Fsp4HI GCNGC 5 cut(s) 5, 108, 855, 1009, 1043
GlaI GCGC 2 cut(s) 217, 1007
GluI GCNGC 5 cut(s) 5, 108, 855, 1009, 1043
HaeII RGCGCY 1 cut(s) 1009
HaeIII GGCC 4 cut(s) 85, 321, 971, 1062
HapII CCGG 2 cut(s) 779, 961
HgaI GACGC 1 cut(s) 842
HhaI GCGC 2 cut(s) 218, 1008
Hin1II CATG 4 cut(s) 16, 392, 908, 938
Hin6I GCGC 2 cut(s) 216, 1006
HinP1I GCGC 2 cut(s) 216, 1006
HinfI GANTC 2 cut(s) 122, 380
HpaII CCGG 2 cut(s) 779, 961
HphI GGTGA 1 cut(s) 711
Hpy166II GTNNAC 1 cut(s) 814
Hpy188I TCNGA 2 cut(s) 247, 732
Hpy188III TCNNGA 6 cut(s) 13, 154, 887, 899, 941, 1070
Hpy8I GTNNAC 1 cut(s) 814
HpyAV CCTTC 8 cut(s) 194, 484, 571, 601, 672, 812, 838, 1052
HpyCH4III ACNGT 2 cut(s) 103, 416
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 3 cut(s) 179, 670, 1036
HpyF10VI GCNNNNNNNGC 7 cut(s) 224, 590, 914, 935, 956, 977, 1042
HpyF3I CTNAG 6 cut(s) 118, 426, 723, 764, 825, 939
HpySE526I ACGT 1 cut(s) 46
Hsp92II CATG 4 cut(s) 16, 392, 908, 938
HspAI GCGC 2 cut(s) 216, 1006
Kzo9I GATC 4 cut(s) 163, 282, 444, 990
LmnI GCTCC 8 cut(s) 115, 145, 484, 621, 658, 804, 901, 964
Lsp1109I GCAGC 3 cut(s) 94, 866, 1054
LweI GCATC 1 cut(s) 1069
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 2 cut(s) 449, 717
MalI GATC 4 cut(s) 165, 284, 446, 992
MboI GATC 4 cut(s) 163, 282, 444, 990
MboII GAAGA 5 cut(s) 28, 344, 367, 506, 1000
MflI RGATCY 2 cut(s) 282, 990
MhlI GDGCHC 1 cut(s) 801
MluCI AATT 1 cut(s) 694
MmeI TCCRAC 1 cut(s) 1002
MseI TTAA 4 cut(s) 42, 572, 630, 702
MslI CAYNNNNRTG 1 cut(s) 1016
MspCI CTTAAG 1 cut(s) 701
MspI CCGG 2 cut(s) 779, 961
MspR9I CCNGG 2 cut(s) 961, 962
MwoI GCNNNNNNNGC 7 cut(s) 224, 590, 914, 935, 956, 977, 1042
NciI CCSGG 2 cut(s) 961, 962
NcoI CCATGG 1 cut(s) 388
NdeII GATC 4 cut(s) 163, 282, 444, 990
NlaIII CATG 4 cut(s) 16, 392, 908, 938
NlaIV GGNNCC 4 cut(s) 141, 205, 394, 654
NmeAIII GCCGAG 1 cut(s) 1071
NmuCI GTSAC 1 cut(s) 717
NspI RCATGY 2 cut(s) 908, 938
PaeI GCATGC 2 cut(s) 908, 938
PagI TCATGA 1 cut(s) 12
PceI AGGCCT 1 cut(s) 321
PfeI GAWTC 2 cut(s) 122, 380
PflFI GACNNNGTC 1 cut(s) 22
PkrI GCNGC 5 cut(s) 6, 109, 856, 1010, 1044
PpuMI RGGWCCY 1 cut(s) 203
Psp124BI GAGCTC 1 cut(s) 801
Psp1406I AACGTT 1 cut(s) 46
Psp5II RGGWCCY 1 cut(s) 203
PspN4I GGNNCC 4 cut(s) 141, 205, 394, 654
PspPI GGNCC 3 cut(s) 77, 203, 392
PspPPI RGGWCCY 1 cut(s) 203
PsrI GAACNNNNNNTAC 2 cut(s) 578, 610
PsuI RGATCY 2 cut(s) 282, 990
PsyI GACNNNGTC 1 cut(s) 22
RsaI GTAC 2 cut(s) 517, 1053
RsaNI GTAC 2 cut(s) 516, 1052
RseI CAYNNNNRTG 1 cut(s) 1016
SacI GAGCTC 1 cut(s) 801
SaqAI TTAA 4 cut(s) 42, 572, 630, 702
SatI GCNGC 5 cut(s) 5, 108, 855, 1009, 1043
Sau3AI GATC 4 cut(s) 163, 282, 444, 990
Sau96I GGNCC 3 cut(s) 77, 203, 392
ScrFI CCNGG 2 cut(s) 961, 962
SduI GDGCHC 1 cut(s) 801
SfaNI GCATC 1 cut(s) 1069
SinI GGWCC 3 cut(s) 77, 203, 392
SmaI CCCGGG 1 cut(s) 962
SmiMI CAYNNNNRTG 1 cut(s) 1016
SmlI CTYRAG 3 cut(s) 701, 887, 1070
SmoI CTYRAG 3 cut(s) 701, 887, 1070
SphI GCATGC 2 cut(s) 908, 938
Sse9I AATT 1 cut(s) 694
SseBI AGGCCT 1 cut(s) 321
SsiI CCGC 4 cut(s) 5, 223, 343, 1009
SspI AATATT 1 cut(s) 361
SstI GAGCTC 1 cut(s) 801
StuI AGGCCT 1 cut(s) 321
StyD4I CCNGG 2 cut(s) 959, 960
StyI CCWWGG 2 cut(s) 80, 388
TaaI ACNGT 2 cut(s) 103, 416
TaiI ACGT 1 cut(s) 49
TaqI TCGA 2 cut(s) 527, 543
TasI AATT 1 cut(s) 694
TatI WGTACW 1 cut(s) 515
TauI GCSGC 2 cut(s) 7, 1011
TfiI GAWTC 2 cut(s) 122, 380
Tru1I TTAA 4 cut(s) 42, 572, 630, 702
Tru9I TTAA 4 cut(s) 42, 572, 630, 702
TseFI GTSAC 1 cut(s) 717
TseI GCWGC 3 cut(s) 107, 854, 1042
Tsp45I GTSAC 1 cut(s) 717
TspDTI ATGAA 4 cut(s) 29, 479, 552, 590
TspGWI ACGGA 1 cut(s) 437
TspMI CCCGGG 1 cut(s) 960
Tth111I GACNNNGTC 1 cut(s) 22
Vha464I CTTAAG 1 cut(s) 701
VpaK11BI GGWCC 3 cut(s) 77, 203, 392
XceI RCATGY 2 cut(s) 908, 938
XmaI CCCGGG 1 cut(s) 960
XmiI GTMKAC 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.