FvH4_6g23360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000776
Physical Location & Seq
Forward (+)
17380705 .. 17383440
2736 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23360.t1

Sequence Viewer

Length: 696 bp
ATGCCGGTGCTCAGGAAAAGGAAAGCTCAGGAGGAGGTGGAGGAGCGTTTGCGACTGGAGTGTGCGCAACAATATGGCTCCTCTTCTGCCAGATCCAACACAGCCACTCCGACGACGACGGTGCCATCCCTTGCTGAATCGGCTCCCTCTCTAACCGACGACGATGACAAGTCAGCGACCCGAGTATCAGAAACACTTTCTGAGGGTGCACCCAGGGTTGTCAGCGCTCGCCGGAAATCGAAGAAAAGCGGAGGACCTCCCCAGAAAGGCAACCGGGGTGTGGTGAACTGCTCAAAGGTGTCTGATATTGTGAAAAGCATGGGGAAGAAGATCAACTTGGACTTTGATTGGGAGGTTATTGATGGACCTCGTAATTCTGATGTATGCAGCCTATTTGTGAATATTGTTGGAAGCATCATACGAGAAAGAGTGGCAATGAAGAAGGAATCGTGGTATGATTTAGACAAGGAGGAGAGGAAGAAGCTTTTTGACGGTCTCACTAGACGATCGGTTGCCAACTCCAGCAACCGTGGTAAGAAGGAGTTGGAGCACCACTCAGGGAGGAAACCTATCATTTACCGGGTGGCCGAGCTAAGGGATAAGGGTGCTTCATTAGTGGTGGTTGACGTGTACCCTGTGACATACGACATCAACCAGCCTAAAGCTGCTGAGCATTATGTAAGTATCAATACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

25.69

Weight (kDa)

9.43

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 66
AccB1I GGYRCC 1 cut(s) 121
AciI CCGC 1 cut(s) 249
AclWI GGATC 1 cut(s) 87
AcoI YGGCCR 1 cut(s) 585
AfaI GTAC 1 cut(s) 632
AfeI AGCGCT 1 cut(s) 226
AfiI CCNNNNNNNGG 3 cut(s) 266, 280, 594
AflIII ACRYGT 1 cut(s) 627
AjiI CACGTC 1 cut(s) 628
AjnI CCWGG 1 cut(s) 212
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AluBI AGCT 4 cut(s) 26, 484, 592, 665
AluI AGCT 4 cut(s) 26, 484, 592, 665
Alw21I GWGCWC 3 cut(s) 12, 211, 552
Alw26I GTCTC 1 cut(s) 500
Alw44I GTGCAC 1 cut(s) 207
AlwI GGATC 1 cut(s) 87
Ama87I CYCGRG 1 cut(s) 180
Aor51HI AGCGCT 1 cut(s) 226
AoxI GGCC 1 cut(s) 585
ApaLI GTGCAC 1 cut(s) 207
ApeKI GCWGC 2 cut(s) 387, 665
AspLEI GCGC 2 cut(s) 67, 227
AspS9I GGNCC 2 cut(s) 254, 365
AsuC2I CCSGG 2 cut(s) 275, 581
AsuHPI GGTGA 1 cut(s) 295
AvaI CYCGRG 1 cut(s) 180
AvaII GGWCC 2 cut(s) 254, 365
BaeGI GKGCMC 1 cut(s) 211
BaeI ACNNNNGTAYC 2 cut(s) 168, 201
BanI GGYRCC 1 cut(s) 121
Bbv12I GWGCWC 3 cut(s) 12, 211, 552
BbvI GCAGC 2 cut(s) 399, 652
BccI CCATC 2 cut(s) 133, 356
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 1 cut(s) 214
BcnI CCSGG 2 cut(s) 275, 581
BcoDI GTCTC 1 cut(s) 500
BfaI CTAG 1 cut(s) 501
BfoI RGCGCY 1 cut(s) 228
BisI GCNGC 2 cut(s) 388, 666
BlpI GCTNAGC 1 cut(s) 669
BlsI GCNGC 2 cut(s) 389, 667
Bme1390I CCNGG 3 cut(s) 214, 275, 581
Bme18I GGWCC 2 cut(s) 254, 365
BmeT110I CYCGRG 1 cut(s) 180
BmgBI CACGTC 1 cut(s) 628
BmgT120I GGNCC 2 cut(s) 254, 365
BmiI GGNNCC 3 cut(s) 79, 123, 144
BmrFI CCNGG 3 cut(s) 214, 275, 581
BmsI GCATC 1 cut(s) 423
BplI GAGNNNNNCTC 2 cut(s) 539, 571
BpmI CTGGAG 2 cut(s) 77, 505
Bpu10I CCTNAGC 3 cut(s) 11, 27, 593
Bpu1102I GCTNAGC 1 cut(s) 669
BpuMI CCSGG 2 cut(s) 275, 581
BsaI GGTCTC 1 cut(s) 500
BsaJI CCNNGG 4 cut(s) 212, 213, 274, 529
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 3 cut(s) 266, 280, 594
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 60
Bse3DI GCAATG 1 cut(s) 441
BseBI CCWGG 1 cut(s) 214
BseDI CCNNGG 4 cut(s) 212, 213, 274, 529
BseGI GGATG 1 cut(s) 125
BseLI CCNNNNNNNGG 3 cut(s) 266, 280, 594
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 5 cut(s) 25, 41, 192, 570, 660
BseNI ACTGG 1 cut(s) 60
BseRI GAGGAG 4 cut(s) 47, 56, 70, 485
BseSI GKGCMC 1 cut(s) 211
BseXI GCAGC 2 cut(s) 399, 652
Bsh1285I CGRYCG 1 cut(s) 509
BshFI GGCC 1 cut(s) 587
BshNI GGYRCC 1 cut(s) 121
BsiEI CGRYCG 1 cut(s) 509
BsiHKAI GWGCWC 3 cut(s) 12, 211, 552
BsiHKCI CYCGRG 1 cut(s) 180
BsiSI CCGG 4 cut(s) 5, 232, 274, 580
BslI CCNNNNNNNGG 3 cut(s) 266, 280, 594
BsmAI GTCTC 1 cut(s) 500
BsnI GGCC 1 cut(s) 587
Bso31I GGTCTC 1 cut(s) 500
BsoBI CYCGRG 1 cut(s) 180
Bsp1286I GDGCHC 3 cut(s) 12, 211, 552
Bsp143I GATC 3 cut(s) 92, 330, 506
Bsp1720I GCTNAGC 1 cut(s) 669
BspACI CCGC 1 cut(s) 249
BspANI GGCC 1 cut(s) 587
BspCNI CTCAG 5 cut(s) 24, 40, 193, 569, 661
BspLI GGNNCC 3 cut(s) 79, 123, 144
BspPI GGATC 1 cut(s) 87
BspT107I GGYRCC 1 cut(s) 121
BspTNI GGTCTC 1 cut(s) 500
BsrDI GCAATG 1 cut(s) 441
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 60
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 4 cut(s) 212, 213, 274, 529
BssMI GATC 3 cut(s) 92, 330, 506
Bst2UI CCWGG 1 cut(s) 214
Bst4CI ACNGT 3 cut(s) 121, 494, 530
Bst6I CTCTTC 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 6 cut(s) 11, 27, 201, 556, 593, 669
BstDSI CCRYGG 1 cut(s) 529
BstF5I GGATG 1 cut(s) 125
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 2 cut(s) 67, 227
BstKTI GATC 3 cut(s) 95, 333, 509
BstMAI GTCTC 1 cut(s) 500
BstMBI GATC 3 cut(s) 92, 330, 506
BstMCI CGRYCG 1 cut(s) 509
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNI CCWGG 1 cut(s) 214
BstSCI CCNGG 3 cut(s) 212, 273, 579
BstSLI GKGCMC 1 cut(s) 211
BstV1I GCAGC 2 cut(s) 399, 652
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BsuRI GGCC 1 cut(s) 587
BtgI CCRYGG 1 cut(s) 529
BtrI CACGTC 1 cut(s) 628
BtsCI GGATG 1 cut(s) 125
Cac8I GCNNGC 1 cut(s) 229
CfoI GCGC 2 cut(s) 67, 227
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 2 cut(s) 254, 365
Csp6I GTAC 1 cut(s) 631
CviAII CATG 1 cut(s) 319
CviQI GTAC 1 cut(s) 631
DdeI CTNAG 6 cut(s) 11, 27, 201, 556, 593, 669
DpnI GATC 3 cut(s) 94, 332, 508
DpnII GATC 3 cut(s) 92, 330, 506
EaeI YGGCCR 1 cut(s) 585
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
Eco31I GGTCTC 1 cut(s) 500
Eco47I GGWCC 2 cut(s) 254, 365
Eco47III AGCGCT 1 cut(s) 226
Eco88I CYCGRG 1 cut(s) 180
EcoO109I RGGNCCY 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 212
FaeI CATG 1 cut(s) 322
FaiI YATR 7 cut(s) 75, 320, 385, 419, 456, 643, 678
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FatI CATG 1 cut(s) 318
Fnu4HI GCNGC 2 cut(s) 388, 666
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 2 cut(s) 388, 666
FspBI CTAG 1 cut(s) 501
FspI TGCGCA 1 cut(s) 66
GlaI GCGC 2 cut(s) 66, 226
GluI GCNGC 2 cut(s) 388, 666
GsuI CTGGAG 2 cut(s) 77, 505
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 1 cut(s) 587
HapII CCGG 4 cut(s) 5, 232, 274, 580
HhaI GCGC 2 cut(s) 67, 227
Hin1II CATG 1 cut(s) 322
Hin6I GCGC 2 cut(s) 65, 225
HinP1I GCGC 2 cut(s) 65, 225
HincII GTYRAC 1 cut(s) 625
HindII GTYRAC 1 cut(s) 625
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 2 cut(s) 137, 446
HpaII CCGG 4 cut(s) 5, 232, 274, 580
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 4 cut(s) 209, 286, 625, 631
Hpy188I TCNGA 5 cut(s) 111, 190, 202, 304, 379
Hpy188III TCNNGA 2 cut(s) 13, 29
Hpy8I GTNNAC 4 cut(s) 209, 286, 625, 631
Hpy99I CGWCG 5 cut(s) 115, 118, 121, 161, 164
HpyAV CCTTC 2 cut(s) 436, 532
HpyCH4III ACNGT 3 cut(s) 121, 494, 530
HpyCH4IV ACGT 1 cut(s) 627
HpyCH4V TGCA 2 cut(s) 209, 387
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 6 cut(s) 11, 27, 201, 556, 593, 669
HpySE526I ACGT 1 cut(s) 627
Hsp92II CATG 1 cut(s) 322
HspAI GCGC 2 cut(s) 65, 225
Kzo9I GATC 3 cut(s) 92, 330, 506
LmnI GCTCC 4 cut(s) 43, 83, 148, 547
Lsp1109I GCAGC 2 cut(s) 399, 652
LweI GCATC 1 cut(s) 423
MaeI CTAG 1 cut(s) 501
MaeII ACGT 1 cut(s) 627
MaeIII GTNAC 1 cut(s) 637
MalI GATC 3 cut(s) 94, 332, 508
MboI GATC 3 cut(s) 92, 330, 506
MboII GAAGA 6 cut(s) 75, 253, 337, 340, 451, 490
MflI RGATCY 1 cut(s) 92
MhlI GDGCHC 3 cut(s) 12, 211, 552
MluCI AATT 1 cut(s) 373
MmeI TCCRAC 4 cut(s) 120, 134, 388, 525
MspI CCGG 4 cut(s) 5, 232, 274, 580
MspR9I CCNGG 3 cut(s) 214, 275, 581
MvaI CCWGG 1 cut(s) 214
MwoI GCNNNNNNNGC 1 cut(s) 140
NciI CCSGG 2 cut(s) 275, 581
NdeII GATC 3 cut(s) 92, 330, 506
NlaIII CATG 1 cut(s) 322
NlaIV GGNNCC 3 cut(s) 79, 123, 144
NmeAIII GCCGAG 1 cut(s) 613
NmuCI GTSAC 1 cut(s) 637
NsbI TGCGCA 1 cut(s) 66
PasI CCCWGGG 1 cut(s) 213
PfeI GAWTC 2 cut(s) 137, 446
PkrI GCNGC 2 cut(s) 389, 667
Ple19I CGATCG 1 cut(s) 509
PpuMI RGGWCCY 1 cut(s) 254
Psp5II RGGWCCY 1 cut(s) 254
Psp6I CCWGG 1 cut(s) 212
PspGI CCWGG 1 cut(s) 212
PspN4I GGNNCC 3 cut(s) 79, 123, 144
PspPI GGNCC 2 cut(s) 254, 365
PspPPI RGGWCCY 1 cut(s) 254
PsuI RGATCY 1 cut(s) 92
PvuI CGATCG 1 cut(s) 509
RsaI GTAC 1 cut(s) 632
RsaNI GTAC 1 cut(s) 631
SatI GCNGC 2 cut(s) 388, 666
Sau3AI GATC 3 cut(s) 92, 330, 506
Sau96I GGNCC 2 cut(s) 254, 365
ScrFI CCNGG 3 cut(s) 214, 275, 581
SduI GDGCHC 3 cut(s) 12, 211, 552
SfaNI GCATC 1 cut(s) 423
SinI GGWCC 2 cut(s) 254, 365
Sse9I AATT 1 cut(s) 373
SsiI CCGC 1 cut(s) 249
SspI AATATT 1 cut(s) 403
SspMI CTAG 1 cut(s) 501
StyD4I CCNGG 3 cut(s) 212, 273, 579
TaaI ACNGT 3 cut(s) 121, 494, 530
TaiI ACGT 1 cut(s) 630
TaqI TCGA 1 cut(s) 239
TasI AATT 1 cut(s) 373
TfiI GAWTC 2 cut(s) 137, 446
TseFI GTSAC 1 cut(s) 637
TseI GCWGC 2 cut(s) 387, 665
Tsp45I GTSAC 1 cut(s) 637
TspDTI ATGAA 2 cut(s) 452, 600
VneI GTGCAC 1 cut(s) 207
VpaK11BI GGWCC 2 cut(s) 254, 365
XspI CTAG 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.