FvH4_5g24202

Domain of unknown function (DUF4218)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000776
Physical Location & Seq
Forward (+)
15505466 .. 15506572
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24202.t1

Sequence Viewer

Length: 294 bp
ATGTCAATTTACAGGCCGTATTTTAAAATTGATTTTGGGGATAAACGGATGTGGGCGTGGCTTGAAGATAAGGCGGGTACCATATATCGAGATTGGAAGGGGGACTTCTCAAGGCACTATAAGAAGTATGGGAGAGAAAGAATTCCGCCAGATTTGATACACAGGCAGGATAAGTGGGACTGGCTTTGCTGGCACTTTGAGTCGCCTGATTTTAAGACACGATCGGCGGCTAACAAGACCAACCGTGGTAAGAAGAAGTCGGAGCACCACACGGGGCGGCTACCTATCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transposase_21

Protein Analysis

98

Amino Acids

11.94

Weight (kDa)

9.85

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 77
AccB1I GGYRCC 1 cut(s) 77
AciI CCGC 4 cut(s) 74, 146, 227, 277
AcsI RAATTY 1 cut(s) 141
AfaI GTAC 1 cut(s) 79
AgsI TTSAA 1 cut(s) 65
Alw21I GWGCWC 1 cut(s) 267
AoxI GGCC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 141
Asp700I GAANNNNTTC 1 cut(s) 141
Asp718I GGTACC 1 cut(s) 77
BanI GGYRCC 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 267
BfaI CTAG 1 cut(s) 292
BisI GCNGC 2 cut(s) 228, 278
BlsI GCNGC 2 cut(s) 229, 279
BmiI GGNNCC 1 cut(s) 79
BpuEI CTTGAG 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 185
Bsh1285I CGRYCG 1 cut(s) 224
BshFI GGCC 1 cut(s) 16
BshNI GGYRCC 1 cut(s) 77
BsiEI CGRYCG 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 267
BslFI GGGAC 2 cut(s) 116, 191
BsmFI GGGAC 2 cut(s) 116, 191
BsnI GGCC 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 1 cut(s) 221
BspACI CCGC 4 cut(s) 74, 146, 227, 277
BspANI GGCC 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 77
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 191
BstDSI CCRYGG 1 cut(s) 244
BstF5I GGATG 1 cut(s) 54
BstKTI GATC 1 cut(s) 224
BstMBI GATC 1 cut(s) 221
BstMCI CGRYCG 1 cut(s) 224
BstMWI GCNNNNNNNGC 1 cut(s) 190
BsuRI GGCC 1 cut(s) 16
BtgI CCRYGG 1 cut(s) 244
BtsCI GGATG 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 191
Csp6I GTAC 1 cut(s) 78
CviJI RGCY 5 cut(s) 16, 61, 184, 230, 280
CviKI_1 RGCY 5 cut(s) 16, 61, 184, 230, 280
CviQI GTAC 1 cut(s) 78
DpnI GATC 1 cut(s) 223
DpnII GATC 1 cut(s) 221
DraI TTTAAA 1 cut(s) 25
EciI GGCGGA 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 141
FaiI YATR 4 cut(s) 83, 85, 120, 129
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FaqI GGGAC 2 cut(s) 116, 191
FauI CCCGC 1 cut(s) 67
Fnu4HI GCNGC 2 cut(s) 228, 278
FokI GGATG 1 cut(s) 61
Fsp4HI GCNGC 2 cut(s) 228, 278
FspBI CTAG 1 cut(s) 292
GluI GCNGC 2 cut(s) 228, 278
HaeIII GGCC 1 cut(s) 16
HinfI GANTC 1 cut(s) 200
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
KpnI GGTACC 1 cut(s) 81
Kzo9I GATC 1 cut(s) 221
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 6 cut(s) 148, 152, 162, 166, 175, 219
MaeI CTAG 1 cut(s) 292
MalI GATC 1 cut(s) 223
MboI GATC 1 cut(s) 221
MboII GAAGA 2 cut(s) 77, 265
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 3 cut(s) 6, 27, 141
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 240
MroXI GAANNNNTTC 1 cut(s) 141
MseI TTAA 2 cut(s) 24, 213
MwoI GCNNNNNNNGC 1 cut(s) 190
NdeII GATC 1 cut(s) 221
NlaIV GGNNCC 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 141
PkrI GCNGC 2 cut(s) 229, 279
Ple19I CGATCG 1 cut(s) 224
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 79
PvuI CGATCG 1 cut(s) 224
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
SaqAI TTAA 2 cut(s) 24, 213
SatI GCNGC 2 cut(s) 228, 278
Sau3AI GATC 1 cut(s) 221
SchI GAGTC 1 cut(s) 209
SduI GDGCHC 1 cut(s) 267
SetI ASST 1 cut(s) 286
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
Sse9I AATT 3 cut(s) 6, 27, 141
SsiI CCGC 4 cut(s) 74, 146, 227, 277
SspMI CTAG 1 cut(s) 292
TaaI ACNGT 1 cut(s) 245
TaqI TCGA 1 cut(s) 88
TasI AATT 3 cut(s) 6, 27, 141
TauI GCSGC 2 cut(s) 230, 280
Tru1I TTAA 2 cut(s) 24, 213
Tru9I TTAA 2 cut(s) 24, 213
TspGWI ACGGA 1 cut(s) 61
XapI RAATTY 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 141
XspI CTAG 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.