FvH4_6g21871

TdcA1-ORF2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000776
Physical Location & Seq
Reverse (-)
15531447 .. 15533522
2076 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21871.t1

Sequence Viewer

Length: 636 bp
ATGTTTGGTAAGTTACCTAATTCAGAAATTTTAAGAGAAGATGAGTTATGTGAGGCTCATTGGTGGGTACTGCAACACTGTGACGAAGTCAAGGAATATAGAGATGCTCATTTGAGACTTATTCAACTTAAGTATCAGAATAGGCATGAAGAGAGGCATAAGAAAACGTTTCCTGTATATTTCCTAAAATGGTTGACGAGGATGCAAGAACATCAAGACAAGGATTACTCTCCGCAGTTGCATCATTTGGCGTCTATGCCACAAGGACATAATGTTTATACGGCTTGTAATACGGCGAGGCCGACAGAGAATACGGCGGGGCCGACCGAAGATGTTGTTGTTTTGTCACCGACGGGAGATGGTGAAACGACTCCACCTCCACCACCAGCCTCGATTGCCTCTACAGCTCCCCCGCTGGATGAGGACGAGATCGACGATGTCATCCCAAAAGCTCAGGCGACAGTGTCCGTTGGCTGTAGTGTTCGACGTGGTACTAAAAAGTCCACCGGACCTCCCCCAAAACGCCGACGAGGGTTCGGCAACCTGGACAAAGTCAAGCGTATTGTGAAATGCACCGGCTTGATCAAAATTGCGTATGACGACTTCATTAGCAGTGAACAGCCTCCTGGTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21 Transposase_24

Protein Analysis

212

Amino Acids

23.86

Weight (kDa)

6.75

Isoelectric Point (pI)

58.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 233, 317, 413
AclI AACGTT 1 cut(s) 167
AcsI RAATTY 1 cut(s) 27
AcyI GRCGYC 1 cut(s) 251
AfaI GTAC 2 cut(s) 69, 493
AflII CTTAAG 1 cut(s) 128
AgsI TTSAA 1 cut(s) 125
AjiI CACGTC 1 cut(s) 488
AjnI CCWGG 2 cut(s) 543, 625
AluBI AGCT 2 cut(s) 407, 452
AluI AGCT 2 cut(s) 407, 452
Alw26I GTCTC 1 cut(s) 109
AoxI GGCC 2 cut(s) 299, 320
ApoI RAATTY 1 cut(s) 27
AspS9I GGNCC 2 cut(s) 320, 509
AsuHPI GGTGA 2 cut(s) 339, 374
AvaII GGWCC 1 cut(s) 509
BaeI ACNNNNGTAYC 2 cut(s) 116, 149
BarI GAAGNNNNNNTAC 2 cut(s) 587, 619
BccI CCATC 1 cut(s) 353
BceAI ACGGC 3 cut(s) 297, 309, 330
BciT130I CCWGG 2 cut(s) 545, 627
BclI TGATCA 1 cut(s) 582
BcoDI GTCTC 1 cut(s) 109
BfmI CTRYAG 2 cut(s) 402, 475
BfrI CTTAAG 1 cut(s) 128
Bme1390I CCNGG 2 cut(s) 545, 627
Bme18I GGWCC 1 cut(s) 509
BmgBI CACGTC 1 cut(s) 488
BmgT120I GGNCC 2 cut(s) 320, 509
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 2 cut(s) 545, 627
BmsI GCATC 3 cut(s) 94, 192, 250
Bpu10I CCTNAGC 1 cut(s) 453
BsaHI GRCGYC 1 cut(s) 251
BsaWI WCCGGW 1 cut(s) 506
BsaXI ACNNNNNCTCC 4 cut(s) 361, 391, 496, 526
Bse118I RCCGGY 1 cut(s) 575
BseBI CCWGG 2 cut(s) 545, 627
BseGI GGATG 3 cut(s) 207, 424, 441
BseMII CTCAG 1 cut(s) 467
Bsh1285I CGRYCG 1 cut(s) 327
BshFI GGCC 2 cut(s) 301, 322
BsiEI CGRYCG 1 cut(s) 327
BsiSI CCGG 2 cut(s) 507, 576
BsmAI GTCTC 1 cut(s) 109
BsnI GGCC 2 cut(s) 301, 322
Bsp143I GATC 2 cut(s) 429, 582
BspACI CCGC 3 cut(s) 233, 317, 413
BspANI GGCC 2 cut(s) 301, 322
BspCNI CTCAG 1 cut(s) 466
BspLI GGNNCC 1 cut(s) 321
BspTI CTTAAG 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 575
BssAI RCCGGY 1 cut(s) 575
BssMI GATC 2 cut(s) 429, 582
BssNI GRCGYC 1 cut(s) 251
Bst2UI CCWGG 2 cut(s) 545, 627
Bst4CI ACNGT 2 cut(s) 80, 463
Bst6I CTCTTC 1 cut(s) 144
BstACI GRCGYC 1 cut(s) 251
BstAFI CTTAAG 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 453
BstF5I GGATG 3 cut(s) 207, 424, 441
BstKTI GATC 2 cut(s) 432, 585
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 2 cut(s) 429, 582
BstMCI CGRYCG 1 cut(s) 327
BstMWI GCNNNNNNNGC 2 cut(s) 395, 404
BstNI CCWGG 2 cut(s) 545, 627
BstSCI CCNGG 2 cut(s) 543, 625
BstSFI CTRYAG 2 cut(s) 402, 475
BsuRI GGCC 2 cut(s) 301, 322
BtrI CACGTC 1 cut(s) 488
BtsCI GGATG 3 cut(s) 207, 424, 441
BtsI GCAGTG 1 cut(s) 619
BtsIMutI CAGTG 3 cut(s) 76, 468, 619
Cfr10I RCCGGY 1 cut(s) 575
Cfr13I GGNCC 2 cut(s) 320, 509
CseI GACGC 1 cut(s) 240
Csp6I GTAC 2 cut(s) 68, 492
CviAII CATG 1 cut(s) 146
CviQI GTAC 2 cut(s) 68, 492
DdeI CTNAG 1 cut(s) 453
DpnI GATC 2 cut(s) 431, 584
DpnII GATC 2 cut(s) 429, 582
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 509
EcoRII CCWGG 2 cut(s) 543, 625
FaeI CATG 1 cut(s) 149
FaiI YATR 9 cut(s) 49, 99, 147, 159, 178, 257, 270, 279, 597
FatI CATG 1 cut(s) 145
FauI CCCGC 2 cut(s) 310, 420
FbaI TGATCA 1 cut(s) 582
FokI GGATG 3 cut(s) 214, 428, 431
HaeIII GGCC 2 cut(s) 301, 322
HapII CCGG 2 cut(s) 507, 576
HgaI GACGC 1 cut(s) 240
Hin1I GRCGYC 1 cut(s) 251
Hin1II CATG 1 cut(s) 149
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HinfI GANTC 1 cut(s) 370
HpaII CCGG 2 cut(s) 507, 576
HphI GGTGA 2 cut(s) 339, 374
Hpy166II GTNNAC 3 cut(s) 195, 504, 617
Hpy188I TCNGA 2 cut(s) 25, 138
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 3 cut(s) 195, 504, 617
Hpy99I CGWCG 4 cut(s) 355, 437, 489, 531
HpyCH4III ACNGT 2 cut(s) 80, 463
HpyCH4IV ACGT 2 cut(s) 167, 487
HpyCH4V TGCA 4 cut(s) 73, 205, 241, 573
HpyF10VI GCNNNNNNNGC 2 cut(s) 395, 404
HpyF3I CTNAG 1 cut(s) 453
HpySE526I ACGT 2 cut(s) 167, 487
Hsp92I GRCGYC 1 cut(s) 251
Hsp92II CATG 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 582
Kzo9I GATC 2 cut(s) 429, 582
LmnI GCTCC 1 cut(s) 412
LpnPI CCDG 9 cut(s) 186, 399, 401, 440, 520, 530, 557, 589, 612
LweI GCATC 3 cut(s) 94, 192, 250
MaeII ACGT 2 cut(s) 167, 487
MaeIII GTNAC 3 cut(s) 12, 80, 345
MalI GATC 2 cut(s) 431, 584
MboI GATC 2 cut(s) 429, 582
MboII GAAGA 3 cut(s) 50, 161, 341
MluCI AATT 3 cut(s) 19, 27, 588
MlyI GAGTC 1 cut(s) 364
MseI TTAA 2 cut(s) 32, 129
MspA1I CMGCKG 1 cut(s) 415
MspCI CTTAAG 1 cut(s) 128
MspI CCGG 2 cut(s) 507, 576
MspR9I CCNGG 2 cut(s) 545, 627
MvaI CCWGG 2 cut(s) 545, 627
MwoI GCNNNNNNNGC 2 cut(s) 395, 404
NdeII GATC 2 cut(s) 429, 582
NlaIII CATG 1 cut(s) 149
NlaIV GGNNCC 1 cut(s) 321
NmuCI GTSAC 2 cut(s) 80, 345
PcsI WCGNNNNNNNCGW 3 cut(s) 299, 320, 432
PflFI GACNNNGTC 4 cut(s) 86, 437, 463, 551
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
Psp1406I AACGTT 1 cut(s) 167
Psp6I CCWGG 2 cut(s) 543, 625
PspGI CCWGG 2 cut(s) 543, 625
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 2 cut(s) 320, 509
PsyI GACNNNGTC 4 cut(s) 86, 437, 463, 551
RsaI GTAC 2 cut(s) 69, 493
RsaNI GTAC 2 cut(s) 68, 492
SaqAI TTAA 2 cut(s) 32, 129
Sau3AI GATC 2 cut(s) 429, 582
Sau96I GGNCC 2 cut(s) 320, 509
SchI GAGTC 1 cut(s) 364
ScrFI CCNGG 2 cut(s) 545, 627
SetI ASST 8 cut(s) 19, 170, 379, 409, 454, 490, 514, 546
SfaNI GCATC 3 cut(s) 94, 192, 250
SfcI CTRYAG 2 cut(s) 402, 475
SinI GGWCC 1 cut(s) 509
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 3 cut(s) 19, 27, 588
SsiI CCGC 3 cut(s) 233, 317, 413
StyD4I CCNGG 2 cut(s) 543, 625
TaaI ACNGT 2 cut(s) 80, 463
TaiI ACGT 2 cut(s) 170, 490
TaqI TCGA 3 cut(s) 392, 432, 484
TaqII GACCGA 1 cut(s) 341
TasI AATT 3 cut(s) 19, 27, 588
Tru1I TTAA 2 cut(s) 32, 129
Tru9I TTAA 2 cut(s) 32, 129
TscAI CASTG 3 cut(s) 83, 468, 619
TseFI GTSAC 2 cut(s) 80, 345
Tsp45I GTSAC 2 cut(s) 80, 345
TspDTI ATGAA 2 cut(s) 162, 595
TspGWI ACGGA 1 cut(s) 457
TspRI CASTG 3 cut(s) 83, 468, 619
Tth111I GACNNNGTC 4 cut(s) 86, 437, 463, 551
Vha464I CTTAAG 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 509
XapI RAATTY 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.