FvH4_4g08270

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000776
Physical Location & Seq
Forward (+)
8159641 .. 8161530
1890 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08270.t1

Sequence Viewer

Length: 525 bp
ATGACACGATCAGCGGCTAACACGGCCAACCATGGTAAGAAGGAGTCGGAGCACCACACGGGGCGGCTACCTATCATCTACAGGGTGGTCCACCACATAGAGAAGGGTGAGGAATTTCCTATTATCCCAGCTTACACGGAGACATATGACACAGTCAACGACCCTAAAGCTGCCAAGAATCTTGAGGAAATGCAGAAAGAGGCCACTGAATTGAAAAATGCACAGAAGAATGCAAACCCTGACATCCTAGAGGCTGAGCTCCCACCTTTGGAGTGGTCAATGAATCTTAAGGTGCTTGAAGCAGGAGTCGGCCGAAGAGCCGGGAAGGAGATTCGTGGTCTTGGAAGAGCAGGTGTCCGAGTGTCATCATCTTCCACTCCACGTTCTCGAGTTCATGAGGTAGAGGAGAGATTACATATTGCTGAGGAGAGGGCTGAAAAAGCTGAGGCGGTTGCGCATAACCTTAGTGAAGAGATGACATTGGTGAAGCAGCAACTAGCAGCAGTGATGTCTTTTAAGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

175

Amino Acids

19.39

Weight (kDa)

6.46

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 341
Acc16I TGCGCA 1 cut(s) 456
Acc36I ACCTGC 1 cut(s) 341
AciI CCGC 3 cut(s) 14, 64, 449
AcoI YGGCCR 2 cut(s) 24, 310
AcsI RAATTY 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 268
AflII CTTAAG 1 cut(s) 287
AgsI TTSAA 2 cut(s) 214, 299
AluBI AGCT 4 cut(s) 131, 170, 259, 443
AluI AGCT 4 cut(s) 131, 170, 259, 443
Alw21I GWGCWC 2 cut(s) 54, 261
Alw26I GTCTC 1 cut(s) 134
Ama87I CYCGRG 1 cut(s) 387
AoxI GGCC 3 cut(s) 24, 201, 310
ApeKI GCWGC 3 cut(s) 170, 490, 500
ApoI RAATTY 1 cut(s) 113
AspLEI GCGC 1 cut(s) 457
AspS9I GGNCC 1 cut(s) 88
AsuC2I CCSGG 1 cut(s) 322
AsuHPI GGTGA 2 cut(s) 119, 496
AvaI CYCGRG 1 cut(s) 387
AvaII GGWCC 1 cut(s) 88
BanII GRGCYC 1 cut(s) 261
Bbv12I GWGCWC 2 cut(s) 54, 261
BbvCI CCTCAGC 2 cut(s) 423, 444
BbvI GCAGC 3 cut(s) 157, 502, 512
BceAI ACGGC 1 cut(s) 39
BcnI CCSGG 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 2 cut(s) 248, 497
BfmI CTRYAG 1 cut(s) 79
BfrI CTTAAG 1 cut(s) 287
BfuAI ACCTGC 1 cut(s) 341
BisI GCNGC 5 cut(s) 15, 65, 171, 491, 501
BlpI GCTNAGC 1 cut(s) 255
BlsI GCNGC 5 cut(s) 16, 66, 172, 492, 502
Bme1390I CCNGG 1 cut(s) 322
Bme18I GGWCC 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 387
BmgT120I GGNCC 1 cut(s) 88
BmrFI CCNGG 1 cut(s) 322
Bpu10I CCTNAGC 2 cut(s) 423, 444
Bpu1102I GCTNAGC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 322
BsaJI CCNNGG 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 1 cut(s) 243
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMII CTCAG 3 cut(s) 246, 414, 435
BseRI GAGGAG 2 cut(s) 419, 440
BseX3I CGGCCG 1 cut(s) 310
BseXI GCAGC 3 cut(s) 157, 502, 512
BseYI CCCAGC 1 cut(s) 127
Bsh1285I CGRYCG 1 cut(s) 313
BshFI GGCC 3 cut(s) 26, 203, 312
BsiEI CGRYCG 1 cut(s) 313
BsiHKAI GWGCWC 2 cut(s) 54, 261
BsiHKCI CYCGRG 1 cut(s) 387
BsiSI CCGG 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 268
BsmAI GTCTC 1 cut(s) 134
BsmI GAATGC 1 cut(s) 235
BsnI GGCC 3 cut(s) 26, 203, 312
BsoBI CYCGRG 1 cut(s) 387
Bsp1286I GDGCHC 2 cut(s) 54, 261
Bsp143I GATC 1 cut(s) 8
Bsp1720I GCTNAGC 1 cut(s) 255
Bsp19I CCATGG 1 cut(s) 31
BspACI CCGC 3 cut(s) 14, 64, 449
BspANI GGCC 3 cut(s) 26, 203, 312
BspCNI CTCAG 3 cut(s) 247, 415, 436
BspHI TCATGA 1 cut(s) 394
BspMI ACCTGC 1 cut(s) 341
BspQI GCTCTTC 2 cut(s) 310, 340
BspTI CTTAAG 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 1 cut(s) 8
BssT1I CCWWGG 1 cut(s) 31
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 3 cut(s) 310, 340, 465
BstAFI CTTAAG 1 cut(s) 287
BstDEI CTNAG 4 cut(s) 255, 423, 444, 464
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 1 cut(s) 243
BstHHI GCGC 1 cut(s) 457
BstKTI GATC 1 cut(s) 11
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 1 cut(s) 8
BstMCI CGRYCG 1 cut(s) 313
BstMWI GCNNNNNNNGC 2 cut(s) 23, 440
BstSCI CCNGG 1 cut(s) 320
BstSFI CTRYAG 1 cut(s) 79
BstV1I GCAGC 3 cut(s) 157, 502, 512
BstZI CGGCCG 1 cut(s) 310
BsuRI GGCC 3 cut(s) 26, 203, 312
BtgI CCRYGG 1 cut(s) 31
BtsCI GGATG 1 cut(s) 243
BtsI GCAGTG 1 cut(s) 510
BtsIMutI CAGTG 2 cut(s) 204, 510
BveI ACCTGC 1 cut(s) 341
CciI TCATGA 1 cut(s) 394
CfoI GCGC 1 cut(s) 457
Cfr13I GGNCC 1 cut(s) 88
CviAII CATG 2 cut(s) 32, 395
DdeI CTNAG 4 cut(s) 255, 423, 444, 464
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
EaeI YGGCCR 2 cut(s) 24, 310
EagI CGGCCG 1 cut(s) 310
Eam1104I CTCTTC 3 cut(s) 310, 340, 465
EarI CTCTTC 3 cut(s) 310, 340, 465
Ecl136II GAGCTC 1 cut(s) 259
EclXI CGGCCG 1 cut(s) 310
Eco130I CCWWGG 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 88
Eco52I CGGCCG 1 cut(s) 310
Eco53kI GAGCTC 1 cut(s) 259
Eco88I CYCGRG 1 cut(s) 387
EcoICRI GAGCTC 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 2 cut(s) 35, 398
FaiI YATR 7 cut(s) 33, 98, 145, 147, 396, 417, 459
FatI CATG 2 cut(s) 31, 394
FauNDI CATATG 1 cut(s) 145
Fnu4HI GCNGC 5 cut(s) 15, 65, 171, 491, 501
FokI GGATG 1 cut(s) 230
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 5 cut(s) 15, 65, 171, 491, 501
FspBI CTAG 2 cut(s) 248, 497
FspI TGCGCA 1 cut(s) 456
GlaI GCGC 1 cut(s) 456
GluI GCNGC 5 cut(s) 15, 65, 171, 491, 501
GsaI CCCAGC 1 cut(s) 131
HaeIII GGCC 3 cut(s) 26, 203, 312
HapII CCGG 1 cut(s) 321
HhaI GCGC 1 cut(s) 457
Hin1II CATG 2 cut(s) 35, 398
Hin6I GCGC 1 cut(s) 455
HinP1I GCGC 1 cut(s) 455
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 5 cut(s) 44, 178, 283, 306, 331
HpaII CCGG 1 cut(s) 321
HphI GGTGA 2 cut(s) 119, 496
Hpy166II GTNNAC 2 cut(s) 91, 157
Hpy188I TCNGA 2 cut(s) 49, 359
Hpy188III TCNNGA 3 cut(s) 182, 387, 395
Hpy8I GTNNAC 2 cut(s) 91, 157
HpyAV CCTTC 3 cut(s) 34, 97, 319
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 382
HpyCH4V TGCA 3 cut(s) 193, 221, 233
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 440
HpyF3I CTNAG 4 cut(s) 255, 423, 444, 464
HpySE526I ACGT 1 cut(s) 382
Hsp92II CATG 2 cut(s) 35, 398
HspAI GCGC 1 cut(s) 455
Kzo9I GATC 1 cut(s) 8
LguI GCTCTTC 2 cut(s) 310, 340
LmnI GCTCC 2 cut(s) 49, 264
LpnPI CCDG 6 cut(s) 67, 141, 252, 288, 334, 336
Lsp1109I GCAGC 3 cut(s) 157, 502, 512
MaeI CTAG 2 cut(s) 248, 497
MaeII ACGT 1 cut(s) 382
MalI GATC 1 cut(s) 10
MboI GATC 1 cut(s) 8
MboII GAAGA 5 cut(s) 238, 327, 357, 363, 482
MhlI GDGCHC 2 cut(s) 54, 261
MluCI AATT 2 cut(s) 113, 209
MlyI GAGTC 2 cut(s) 53, 315
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 9 cut(s) 103, 178, 193, 244, 391, 397, 418, 423, 439
MseI TTAA 2 cut(s) 288, 516
MspA1I CMGCKG 1 cut(s) 14
MspCI CTTAAG 1 cut(s) 287
MspI CCGG 1 cut(s) 321
MspR9I CCNGG 1 cut(s) 322
Mva1269I GAATGC 1 cut(s) 235
MwoI GCNNNNNNNGC 2 cut(s) 23, 440
NciI CCSGG 1 cut(s) 322
NcoI CCATGG 1 cut(s) 31
NdeI CATATG 1 cut(s) 145
NdeII GATC 1 cut(s) 8
NlaIII CATG 2 cut(s) 35, 398
NsbI TGCGCA 1 cut(s) 456
PaeR7I CTCGAG 1 cut(s) 387
PagI TCATGA 1 cut(s) 394
PaqCI CACCTGC 1 cut(s) 341
PciSI GCTCTTC 2 cut(s) 310, 340
PctI GAATGC 1 cut(s) 235
PfeI GAWTC 3 cut(s) 178, 283, 331
PflFI GACNNNGTC 1 cut(s) 152
PkrI GCNGC 5 cut(s) 16, 66, 172, 492, 502
PleI GAGTC 2 cut(s) 52, 314
PpsI GAGTC 2 cut(s) 52, 314
Psp124BI GAGCTC 1 cut(s) 261
PspFI CCCAGC 1 cut(s) 127
PspPI GGNCC 1 cut(s) 88
PsyI GACNNNGTC 1 cut(s) 152
SacI GAGCTC 1 cut(s) 261
SapI GCTCTTC 2 cut(s) 310, 340
SaqAI TTAA 2 cut(s) 288, 516
SatI GCNGC 5 cut(s) 15, 65, 171, 491, 501
Sau3AI GATC 1 cut(s) 8
Sau96I GGNCC 1 cut(s) 88
SchI GAGTC 2 cut(s) 53, 315
ScrFI CCNGG 1 cut(s) 322
SduI GDGCHC 2 cut(s) 54, 261
SfcI CTRYAG 1 cut(s) 79
Sfr274I CTCGAG 1 cut(s) 387
SinI GGWCC 1 cut(s) 88
SlaI CTCGAG 1 cut(s) 387
SmlI CTYRAG 3 cut(s) 182, 287, 387
SmoI CTYRAG 3 cut(s) 182, 287, 387
Sse9I AATT 2 cut(s) 113, 209
SsiI CCGC 3 cut(s) 14, 64, 449
SspMI CTAG 2 cut(s) 248, 497
SstI GAGCTC 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 320
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 1 cut(s) 385
TaqI TCGA 1 cut(s) 388
TasI AATT 2 cut(s) 113, 209
TauI GCSGC 2 cut(s) 17, 67
TfiI GAWTC 3 cut(s) 178, 283, 331
Tru1I TTAA 2 cut(s) 288, 516
Tru9I TTAA 2 cut(s) 288, 516
TscAI CASTG 2 cut(s) 211, 510
TseI GCWGC 3 cut(s) 170, 490, 500
TspDTI ATGAA 2 cut(s) 296, 383
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 2 cut(s) 211, 510
Tth111I GACNNNGTC 1 cut(s) 152
Vha464I CTTAAG 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 88
XapI RAATTY 1 cut(s) 113
XcmI CCANNNNNNNNNTGG 1 cut(s) 270
XhoI CTCGAG 1 cut(s) 387
XspI CTAG 2 cut(s) 248, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.