FvH4_3g26330

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000776
Physical Location & Seq
Forward (+)
19380062 .. 19382555
2494 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26330.t1

Sequence Viewer

Length: 390 bp
ATGTGGGCGTGGCTTGAAAATAAGGCGGGTACCATATATCGAGATTGGAAGGGGGACTTTTCAAGGCACTATAAGAAGTATGGGAGAGAAACAATTCCCCCTGATTTGATACACAAGCAAGATGAGTGGGACTGGCTTTGCTGGCATTTTGAGTCGCCTGATTTCAAGGTGCAGGATGGTCAGAACAGCTTTAACCCTTCCCAGACACGATCGGTGGCTAACAAGACCAACCGTGGTAAGGAGTTGGAGCATCACATGGGGCGGCAACCTATCATCTACAGGGTGGTCCACCACAAAGAGAAGGGTGAGGAATTTCCTGTTATCCCAGCTTACACAGAGACATATGACATAATTAACGACCCTAAAGCTACCAAGAATCTTGTAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

130

Amino Acids

15.4

Weight (kDa)

7.06

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 29
AccB1I GGYRCC 1 cut(s) 29
AciI CCGC 2 cut(s) 26, 262
AcsI RAATTY 1 cut(s) 311
AfaI GTAC 1 cut(s) 31
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 3 cut(s) 17, 63, 166
AluBI AGCT 3 cut(s) 189, 329, 368
AluI AGCT 3 cut(s) 189, 329, 368
Alw26I GTCTC 1 cut(s) 332
ApoI RAATTY 1 cut(s) 311
Asp700I GAANNNNTTC 1 cut(s) 93
Asp718I GGTACC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 286
AsuHPI GGTGA 1 cut(s) 317
AvaII GGWCC 1 cut(s) 286
BanI GGYRCC 1 cut(s) 29
BccI CCATC 1 cut(s) 170
BcoDI GTCTC 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 277
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
Bme18I GGWCC 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 286
BmiI GGNNCC 1 cut(s) 31
BmsI GCATC 1 cut(s) 259
BsaJI CCNNGG 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse1I ACTGG 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 238
BseNI ACTGG 1 cut(s) 137
BseYI CCCAGC 1 cut(s) 325
BsgI GTGCAG 1 cut(s) 191
Bsh1285I CGRYCG 1 cut(s) 212
BshNI GGYRCC 1 cut(s) 29
BsiEI CGRYCG 1 cut(s) 212
BslFI GGGAC 2 cut(s) 68, 143
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 1 cut(s) 332
BsmFI GGGAC 2 cut(s) 68, 143
Bsp143I GATC 1 cut(s) 209
BspACI CCGC 2 cut(s) 26, 262
BspLI GGNNCC 1 cut(s) 31
BspT107I GGYRCC 1 cut(s) 29
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 1 cut(s) 209
Bst4CI ACNGT 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 143
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 1 cut(s) 212
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 1 cut(s) 209
BstMCI CGRYCG 1 cut(s) 212
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstSFI CTRYAG 1 cut(s) 277
BtgI CCRYGG 1 cut(s) 232
BtsCI GGATG 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 286
Csp6I GTAC 1 cut(s) 30
CspCI CAANNNNNGTGG 2 cut(s) 107, 142
CviAII CATG 1 cut(s) 256
CviJI RGCY 6 cut(s) 13, 136, 189, 218, 329, 368
CviKI_1 RGCY 6 cut(s) 13, 136, 189, 218, 329, 368
CviQI GTAC 1 cut(s) 30
DpnI GATC 1 cut(s) 211
DpnII GATC 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 286
FaeI CATG 1 cut(s) 259
FaiI YATR 8 cut(s) 35, 37, 72, 81, 257, 343, 345, 350
FalI AAGNNNNNCTT 2 cut(s) 41, 73
FaqI GGGAC 2 cut(s) 68, 143
FatI CATG 1 cut(s) 255
FauI CCCGC 1 cut(s) 19
FauNDI CATATG 1 cut(s) 343
Fnu4HI GCNGC 1 cut(s) 263
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 263
GluI GCNGC 1 cut(s) 263
GsaI CCCAGC 1 cut(s) 329
Hin1II CATG 1 cut(s) 259
HinfI GANTC 2 cut(s) 152, 376
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 1 cut(s) 41
Hpy8I GTNNAC 1 cut(s) 289
HpyAV CCTTC 3 cut(s) 43, 207, 295
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 1 cut(s) 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
Hsp92II CATG 1 cut(s) 259
KpnI GGTACC 1 cut(s) 33
Kzo9I GATC 1 cut(s) 209
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 9 cut(s) 114, 118, 127, 158, 171, 215, 265, 330, 339
LweI GCATC 1 cut(s) 259
MalI GATC 1 cut(s) 211
MboI GATC 1 cut(s) 209
MluCI AATT 3 cut(s) 93, 311, 351
MlyI GAGTC 1 cut(s) 161
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 1 cut(s) 301
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 3 cut(s) 192, 354, 388
MwoI GCNNNNNNNGC 1 cut(s) 142
NdeI CATATG 1 cut(s) 343
NdeII GATC 1 cut(s) 209
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 1 cut(s) 31
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 1 cut(s) 376
PkrI GCNGC 1 cut(s) 264
Ple19I CGATCG 1 cut(s) 212
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
PspFI CCCAGC 1 cut(s) 325
PspN4I GGNNCC 1 cut(s) 31
PspPI GGNCC 1 cut(s) 286
PvuI CGATCG 1 cut(s) 212
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
SaqAI TTAA 3 cut(s) 192, 354, 388
SatI GCNGC 1 cut(s) 263
Sau3AI GATC 1 cut(s) 209
Sau96I GGNCC 1 cut(s) 286
SchI GAGTC 1 cut(s) 161
SetI ASST 5 cut(s) 171, 191, 271, 331, 370
SfaNI GCATC 1 cut(s) 259
SfcI CTRYAG 1 cut(s) 277
SinI GGWCC 1 cut(s) 286
Sse9I AATT 3 cut(s) 93, 311, 351
SsiI CCGC 2 cut(s) 26, 262
TaaI ACNGT 1 cut(s) 233
TaqI TCGA 1 cut(s) 40
TasI AATT 3 cut(s) 93, 311, 351
TauI GCSGC 1 cut(s) 265
TfiI GAWTC 1 cut(s) 376
Tru1I TTAA 3 cut(s) 192, 354, 388
Tru9I TTAA 3 cut(s) 192, 354, 388
VpaK11BI GGWCC 1 cut(s) 286
XapI RAATTY 1 cut(s) 311
XmnI GAANNNNTTC 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.