transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 245 |
| AccI | GTMKAC | 2 cut(s) | 873, 1027 |
| AciI | CCGC | 1 cut(s) | 122 |
| AclI | AACGTT | 1 cut(s) | 583 |
| AclWI | GGATC | 2 cut(s) | 471, 805 |
| AcoI | YGGCCR | 2 cut(s) | 495, 624 |
| AfaI | GTAC | 1 cut(s) | 298 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 504, 940, 982 |
| AflII | CTTAAG | 1 cut(s) | 761 |
| AgsI | TTSAA | 1 cut(s) | 866 |
| AjiI | CACGTC | 1 cut(s) | 293 |
| AjnI | CCWGG | 3 cut(s) | 447, 503, 567 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 990, 1022 |
| AluBI | AGCT | 5 cut(s) | 212, 257, 676, 859, 889 |
| AluI | AGCT | 5 cut(s) | 212, 257, 676, 859, 889 |
| Alw26I | GTCTC | 1 cut(s) | 796 |
| AlwI | GGATC | 2 cut(s) | 471, 805 |
| Ama87I | CYCGRG | 1 cut(s) | 975 |
| AoxI | GGCC | 9 cut(s) | 24, 104, 125, 495, 573, 620, 624, 984, 1075 |
| ApeKI | GCWGC | 2 cut(s) | 65, 1057 |
| AspLEI | GCGC | 1 cut(s) | 1023 |
| AspS9I | GGNCC | 4 cut(s) | 125, 314, 419, 614 |
| AsuC2I | CCSGG | 2 cut(s) | 976, 977 |
| AsuHPI | GGTGA | 4 cut(s) | 144, 177, 179, 771 |
| AvaI | CYCGRG | 1 cut(s) | 975 |
| AvaII | GGWCC | 3 cut(s) | 314, 419, 614 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 392, 424 |
| BbsI | GAAGAC | 1 cut(s) | 417 |
| BbvI | GCAGC | 2 cut(s) | 77, 1069 |
| BccI | CCATC | 3 cut(s) | 158, 269, 736 |
| BceAI | ACGGC | 3 cut(s) | 114, 135, 1008 |
| BciT130I | CCWGG | 3 cut(s) | 449, 505, 569 |
| BcnI | CCSGG | 2 cut(s) | 976, 977 |
| BcoDI | GTCTC | 1 cut(s) | 796 |
| BfmI | CTRYAG | 2 cut(s) | 207, 280 |
| BfoI | RGCGCY | 1 cut(s) | 1024 |
| BfrI | CTTAAG | 1 cut(s) | 761 |
| BisI | GCNGC | 2 cut(s) | 66, 1058 |
| BlpI | GCTNAGC | 1 cut(s) | 672 |
| BlsI | GCNGC | 2 cut(s) | 67, 1059 |
| Bme1390I | CCNGG | 5 cut(s) | 449, 505, 569, 976, 977 |
| Bme18I | GGWCC | 3 cut(s) | 314, 419, 614 |
| BmeT110I | CYCGRG | 1 cut(s) | 975 |
| BmgBI | CACGTC | 1 cut(s) | 293 |
| BmgT120I | GGNCC | 4 cut(s) | 125, 314, 419, 614 |
| BmiI | GGNNCC | 4 cut(s) | 79, 126, 502, 714 |
| BmrFI | CCNGG | 5 cut(s) | 449, 505, 569, 976, 977 |
| BmsI | GCATC | 1 cut(s) | 1084 |
| BpiI | GAAGAC | 1 cut(s) | 417 |
| BpmI | CTGGAG | 1 cut(s) | 831 |
| Bpu10I | CCTNAGC | 1 cut(s) | 258 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 672 |
| BpuEI | CTTGAG | 1 cut(s) | 939 |
| BpuMI | CCSGG | 2 cut(s) | 976, 977 |
| BsaBI | GATNNNNATC | 1 cut(s) | 52 |
| BsaJI | CCNNGG | 5 cut(s) | 27, 504, 514, 617, 975 |
| BsaWI | WCCGGW | 2 cut(s) | 131, 311 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 23, 53, 126, 156, 301, 331 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 504, 940, 982 |
| Bse118I | RCCGGY | 2 cut(s) | 380, 622 |
| Bse1I | ACTGG | 1 cut(s) | 225 |
| Bse8I | GATNNNNATC | 1 cut(s) | 52 |
| BseBI | CCWGG | 3 cut(s) | 449, 505, 569 |
| BseDI | CCNNGG | 5 cut(s) | 27, 504, 514, 617, 975 |
| BseGI | GGATG | 4 cut(s) | 229, 747, 751, 859 |
| BseJI | GATNNNNATC | 1 cut(s) | 52 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 504, 940, 982 |
| BseMII | CTCAG | 4 cut(s) | 33, 272, 797, 899 |
| BseNI | ACTGG | 1 cut(s) | 225 |
| BseRI | GAGGAG | 2 cut(s) | 953, 974 |
| BseX3I | CGGCCG | 1 cut(s) | 495 |
| BseXI | GCAGC | 2 cut(s) | 77, 1069 |
| BsgI | GTGCAG | 1 cut(s) | 84 |
| Bsh1285I | CGRYCG | 3 cut(s) | 56, 132, 498 |
| BshFI | GGCC | 9 cut(s) | 26, 106, 127, 497, 575, 622, 626, 986, 1077 |
| BsiEI | CGRYCG | 3 cut(s) | 56, 132, 498 |
| BsiHKCI | CYCGRG | 1 cut(s) | 975 |
| BsiSI | CCGG | 8 cut(s) | 81, 132, 312, 381, 498, 623, 839, 976 |
| BslFI | GGGAC | 1 cut(s) | 233 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 504, 940, 982 |
| BsmAI | GTCTC | 1 cut(s) | 796 |
| BsmFI | GGGAC | 1 cut(s) | 233 |
| BsmI | GAATGC | 1 cut(s) | 515 |
| BsnI | GGCC | 9 cut(s) | 26, 106, 127, 497, 575, 622, 626, 986, 1077 |
| BsoBI | CYCGRG | 1 cut(s) | 975 |
| Bsp143I | GATC | 5 cut(s) | 53, 234, 387, 476, 810 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 672 |
| BspACI | CCGC | 1 cut(s) | 122 |
| BspANI | GGCC | 9 cut(s) | 26, 106, 127, 497, 575, 622, 626, 986, 1077 |
| BspCNI | CTCAG | 4 cut(s) | 34, 271, 796, 898 |
| BspLI | GGNNCC | 4 cut(s) | 79, 126, 502, 714 |
| BspPI | GGATC | 2 cut(s) | 471, 805 |
| BspTI | CTTAAG | 1 cut(s) | 761 |
| BsrFI | RCCGGY | 2 cut(s) | 380, 622 |
| BsrI | ACTGG | 1 cut(s) | 225 |
| BssAI | RCCGGY | 2 cut(s) | 380, 622 |
| BssECI | CCNNGG | 5 cut(s) | 27, 504, 514, 617, 975 |
| BssMI | GATC | 5 cut(s) | 53, 234, 387, 476, 810 |
| BssNAI | GTATAC | 1 cut(s) | 1028 |
| BssT1I | CCWWGG | 2 cut(s) | 27, 617 |
| Bst1107I | GTATAC | 1 cut(s) | 1028 |
| Bst2UI | CCWGG | 3 cut(s) | 449, 505, 569 |
| Bst4CI | ACNGT | 3 cut(s) | 268, 423, 640 |
| BstAFI | CTTAAG | 1 cut(s) | 761 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 465, 950 |
| BstC8I | GCNNGC | 3 cut(s) | 597, 624, 921 |
| BstDEI | CTNAG | 7 cut(s) | 42, 258, 300, 672, 783, 824, 885 |
| BstF5I | GGATG | 4 cut(s) | 229, 747, 751, 859 |
| BstH2I | RGCGCY | 1 cut(s) | 1024 |
| BstHHI | GCGC | 1 cut(s) | 1023 |
| BstKTI | GATC | 5 cut(s) | 56, 237, 390, 479, 813 |
| BstMAI | GTCTC | 1 cut(s) | 796 |
| BstMBI | GATC | 5 cut(s) | 53, 234, 387, 476, 810 |
| BstMCI | CGRYCG | 3 cut(s) | 56, 132, 498 |
| BstNI | CCWGG | 3 cut(s) | 449, 505, 569 |
| BstNSI | RCATGY | 2 cut(s) | 923, 953 |
| BstSCI | CCNGG | 5 cut(s) | 447, 503, 567, 974, 975 |
| BstSFI | CTRYAG | 2 cut(s) | 207, 280 |
| BstV1I | GCAGC | 2 cut(s) | 77, 1069 |
| BstV2I | GAAGAC | 1 cut(s) | 417 |
| BstX2I | RGATCY | 1 cut(s) | 810 |
| BstYI | RGATCY | 1 cut(s) | 810 |
| BstZ17I | GTATAC | 1 cut(s) | 1028 |
| BstZI | CGGCCG | 1 cut(s) | 495 |
| BsuRI | GGCC | 9 cut(s) | 26, 106, 127, 497, 575, 622, 626, 986, 1077 |
| BtrI | CACGTC | 1 cut(s) | 293 |
| BtsCI | GGATG | 4 cut(s) | 229, 747, 751, 859 |
| BtsI | GCAGTG | 1 cut(s) | 441 |
| BtsIMutI | CAGTG | 2 cut(s) | 218, 441 |
| Cac8I | GCNNGC | 3 cut(s) | 597, 624, 921 |
| CfoI | GCGC | 1 cut(s) | 1023 |
| Cfr10I | RCCGGY | 2 cut(s) | 380, 622 |
| Cfr13I | GGNCC | 4 cut(s) | 125, 314, 419, 614 |
| Cfr9I | CCCGGG | 1 cut(s) | 975 |
| CseI | GACGC | 3 cut(s) | 22, 27, 902 |
| Csp6I | GTAC | 1 cut(s) | 297 |
| CviAII | CATG | 2 cut(s) | 920, 950 |
| CviQI | GTAC | 1 cut(s) | 297 |
| DdeI | CTNAG | 7 cut(s) | 42, 258, 300, 672, 783, 824, 885 |
| DpnI | GATC | 5 cut(s) | 55, 236, 389, 478, 812 |
| DpnII | GATC | 5 cut(s) | 53, 234, 387, 476, 810 |
| DraI | TTTAAA | 1 cut(s) | 580 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 245 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 245 |
| EaeI | YGGCCR | 2 cut(s) | 495, 624 |
| EagI | CGGCCG | 1 cut(s) | 495 |
| EclXI | CGGCCG | 1 cut(s) | 495 |
| Eco130I | CCWWGG | 2 cut(s) | 27, 617 |
| Eco147I | AGGCCT | 1 cut(s) | 575 |
| Eco47I | GGWCC | 3 cut(s) | 314, 419, 614 |
| Eco52I | CGGCCG | 1 cut(s) | 495 |
| Eco88I | CYCGRG | 1 cut(s) | 975 |
| EcoRII | CCWGG | 3 cut(s) | 447, 503, 567 |
| EcoT14I | CCWWGG | 2 cut(s) | 27, 617 |
| ErhI | CCWWGG | 2 cut(s) | 27, 617 |
| FaeI | CATG | 2 cut(s) | 923, 953 |
| FaiI | YATR | 9 cut(s) | 402, 470, 591, 655, 800, 921, 951, 1017, 1028 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 755, 787 |
| FaqI | GGGAC | 1 cut(s) | 233 |
| FatI | CATG | 2 cut(s) | 919, 949 |
| FauI | CCCGC | 1 cut(s) | 115 |
| FblI | GTMKAC | 2 cut(s) | 873, 1027 |
| Fnu4HI | GCNGC | 2 cut(s) | 66, 1058 |
| FokI | GGATG | 4 cut(s) | 236, 754, 758, 866 |
| FseI | GGCCGGCC | 1 cut(s) | 626 |
| Fsp4HI | GCNGC | 2 cut(s) | 66, 1058 |
| GlaI | GCGC | 1 cut(s) | 1022 |
| GluI | GCNGC | 2 cut(s) | 66, 1058 |
| GsuI | CTGGAG | 1 cut(s) | 831 |
| HaeII | RGCGCY | 1 cut(s) | 1024 |
| HaeIII | GGCC | 9 cut(s) | 26, 106, 127, 497, 575, 622, 626, 986, 1077 |
| HapII | CCGG | 8 cut(s) | 81, 132, 312, 381, 498, 623, 839, 976 |
| HgaI | GACGC | 3 cut(s) | 22, 27, 902 |
| HhaI | GCGC | 1 cut(s) | 1023 |
| Hin1II | CATG | 2 cut(s) | 923, 953 |
| Hin6I | GCGC | 1 cut(s) | 1021 |
| HinP1I | GCGC | 1 cut(s) | 1021 |
| HinfI | GANTC | 1 cut(s) | 1006 |
| HpaII | CCGG | 8 cut(s) | 81, 132, 312, 381, 498, 623, 839, 976 |
| HphI | GGTGA | 4 cut(s) | 144, 177, 179, 771 |
| Hpy166II | GTNNAC | 4 cut(s) | 309, 439, 874, 1028 |
| Hpy188I | TCNGA | 5 cut(s) | 43, 274, 416, 717, 792 |
| Hpy188III | TCNNGA | 5 cut(s) | 848, 914, 956, 1010, 1085 |
| Hpy8I | GTNNAC | 4 cut(s) | 309, 439, 874, 1028 |
| Hpy99I | CGWCG | 4 cut(s) | 160, 242, 294, 336 |
| HpyAV | CCTTC | 5 cut(s) | 192, 661, 732, 898, 1067 |
| HpyCH4III | ACNGT | 3 cut(s) | 268, 423, 640 |
| HpyCH4IV | ACGT | 2 cut(s) | 292, 583 |
| HpyCH4V | TGCA | 5 cut(s) | 65, 378, 468, 730, 1051 |
| HpyF3I | CTNAG | 7 cut(s) | 42, 258, 300, 672, 783, 824, 885 |
| HpySE526I | ACGT | 2 cut(s) | 292, 583 |
| Hsp92II | CATG | 2 cut(s) | 923, 953 |
| HspAI | GCGC | 1 cut(s) | 1021 |
| KroI | GCCGGC | 1 cut(s) | 622 |
| KroNI | GCCGGC | 1 cut(s) | 624 |
| Kzo9I | GATC | 5 cut(s) | 53, 234, 387, 476, 810 |
| LmnI | GCTCC | 4 cut(s) | 217, 681, 718, 916 |
| Lsp1109I | GCAGC | 2 cut(s) | 77, 1069 |
| LweI | GCATC | 1 cut(s) | 1084 |
| MaeII | ACGT | 2 cut(s) | 292, 583 |
| MaeIII | GTNAC | 3 cut(s) | 150, 518, 777 |
| MalI | GATC | 5 cut(s) | 55, 236, 389, 478, 812 |
| MboI | GATC | 5 cut(s) | 53, 234, 387, 476, 810 |
| MboII | GAAGA | 6 cut(s) | 417, 541, 544, 820, 854, 1015 |
| MflI | RGATCY | 1 cut(s) | 810 |
| MluCI | AATT | 5 cut(s) | 71, 393, 471, 488, 754 |
| MroNI | GCCGGC | 1 cut(s) | 622 |
| MseI | TTAA | 3 cut(s) | 579, 690, 762 |
| MspCI | CTTAAG | 1 cut(s) | 761 |
| MspI | CCGG | 8 cut(s) | 81, 132, 312, 381, 498, 623, 839, 976 |
| MspR9I | CCNGG | 5 cut(s) | 449, 505, 569, 976, 977 |
| Mva1269I | GAATGC | 1 cut(s) | 515 |
| MvaI | CCWGG | 3 cut(s) | 449, 505, 569 |
| NaeI | GCCGGC | 1 cut(s) | 624 |
| NciI | CCSGG | 2 cut(s) | 976, 977 |
| NdeII | GATC | 5 cut(s) | 53, 234, 387, 476, 810 |
| NgoMIV | GCCGGC | 1 cut(s) | 622 |
| NlaIII | CATG | 2 cut(s) | 923, 953 |
| NlaIV | GGNNCC | 4 cut(s) | 79, 126, 502, 714 |
| NmeAIII | GCCGAG | 1 cut(s) | 1086 |
| NmuCI | GTSAC | 2 cut(s) | 150, 777 |
| NspI | RCATGY | 2 cut(s) | 923, 953 |
| PaeI | GCATGC | 1 cut(s) | 923 |
| PceI | AGGCCT | 1 cut(s) | 575 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 125, 237, 243 |
| PctI | GAATGC | 1 cut(s) | 515 |
| PdiI | GCCGGC | 1 cut(s) | 624 |
| PfeI | GAWTC | 1 cut(s) | 1006 |
| PflFI | GACNNNGTC | 2 cut(s) | 242, 356 |
| PkrI | GCNGC | 2 cut(s) | 67, 1059 |
| Ple19I | CGATCG | 1 cut(s) | 56 |
| Psp1406I | AACGTT | 1 cut(s) | 583 |
| Psp6I | CCWGG | 3 cut(s) | 447, 503, 567 |
| PspGI | CCWGG | 3 cut(s) | 447, 503, 567 |
| PspN4I | GGNNCC | 4 cut(s) | 79, 126, 502, 714 |
| PspPI | GGNCC | 4 cut(s) | 125, 314, 419, 614 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 638, 670 |
| PsuI | RGATCY | 1 cut(s) | 810 |
| PsyI | GACNNNGTC | 2 cut(s) | 242, 356 |
| PvuI | CGATCG | 1 cut(s) | 56 |
| RigI | GGCCGGCC | 1 cut(s) | 626 |
| RsaI | GTAC | 1 cut(s) | 298 |
| RsaNI | GTAC | 1 cut(s) | 297 |
| SaqAI | TTAA | 3 cut(s) | 579, 690, 762 |
| SatI | GCNGC | 2 cut(s) | 66, 1058 |
| Sau3AI | GATC | 5 cut(s) | 53, 234, 387, 476, 810 |
| Sau96I | GGNCC | 4 cut(s) | 125, 314, 419, 614 |
| ScrFI | CCNGG | 5 cut(s) | 449, 505, 569, 976, 977 |
| SfaNI | GCATC | 1 cut(s) | 1084 |
| SfcI | CTRYAG | 2 cut(s) | 207, 280 |
| SinI | GGWCC | 3 cut(s) | 314, 419, 614 |
| SmaI | CCCGGG | 1 cut(s) | 977 |
| SmlI | CTYRAG | 3 cut(s) | 761, 954, 1085 |
| SmoI | CTYRAG | 3 cut(s) | 761, 954, 1085 |
| SphI | GCATGC | 1 cut(s) | 923 |
| Sse9I | AATT | 5 cut(s) | 71, 393, 471, 488, 754 |
| SseBI | AGGCCT | 1 cut(s) | 575 |
| SsiI | CCGC | 1 cut(s) | 122 |
| StuI | AGGCCT | 1 cut(s) | 575 |
| StyD4I | CCNGG | 5 cut(s) | 447, 503, 567, 974, 975 |
| StyI | CCWWGG | 2 cut(s) | 27, 617 |
| TaaI | ACNGT | 3 cut(s) | 268, 423, 640 |
| TaiI | ACGT | 2 cut(s) | 295, 586 |
| TaqI | TCGA | 6 cut(s) | 197, 237, 289, 342, 390, 475 |
| TasI | AATT | 5 cut(s) | 71, 393, 471, 488, 754 |
| TfiI | GAWTC | 1 cut(s) | 1006 |
| Tru1I | TTAA | 3 cut(s) | 579, 690, 762 |
| Tru9I | TTAA | 3 cut(s) | 579, 690, 762 |
| TscAI | CASTG | 2 cut(s) | 225, 441 |
| TseFI | GTSAC | 2 cut(s) | 150, 777 |
| TseI | GCWGC | 2 cut(s) | 65, 1057 |
| Tsp45I | GTSAC | 2 cut(s) | 150, 777 |
| TspDTI | ATGAA | 2 cut(s) | 400, 417 |
| TspGWI | ACGGA | 1 cut(s) | 104 |
| TspMI | CCCGGG | 1 cut(s) | 975 |
| TspRI | CASTG | 2 cut(s) | 225, 441 |
| Tth111I | GACNNNGTC | 2 cut(s) | 242, 356 |
| Vha464I | CTTAAG | 1 cut(s) | 761 |
| VpaK11BI | GGWCC | 3 cut(s) | 314, 419, 614 |
| XceI | RCATGY | 2 cut(s) | 923, 953 |
| XmaI | CCCGGG | 1 cut(s) | 975 |
| XmiI | GTMKAC | 2 cut(s) | 873, 1027 |