FvH4_6g31520

transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
24647114 .. 24654465
7352 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31520.t1

Sequence Viewer

Length: 1101 bp
ATGCCACCATTGACGCAGAAAAAGGCCAAGGAGATTGCGTCTGAGAGATTGCGATCGGCTTGTGCAGCCCAATTTGGTTCCGGCACAACGGAGAATACGGCGAGGCCAACAGAGAATACGGCGGGGCCGACCGGAGATGTTGTTGTTTTGTCACCGACGGGAGATGGTGAAACTACTCCACCTTCACCACCAGCCTCGATTGCCTCTACAGCTCCCCCACTGGATGAGGACGAGATCGACGATGTCGTCCCAGAAGCTCAGGCAACGGTGTCCGATGGCTGTAGTGTTCGACGTGGTACTAAGAAGTCCACCGGACCTCCCCCAAAATGCCGACGAGGGTTCGACAACTTGGACGAAGTCAAGCGTATTGTGAAATGCACCGGCTTGATCGAAATTGTGTATGACGACTTCATCAGAGGACCGTCTTCATCAGCAGTGAACAGCCTCCTGGTCAATAGCATTGGTTGCATAATTCGATCCAAAGTCAAATTGTCGGCCGGAACCTGGGAATGCCTCGGTAACTTTGAGAAGAAGAAGTTGATAGACGGGCTTACGAGGAAGTCAAGCCAGGAGGCCTTTAAACGTTGCTATGAGCAGGCTGTTCAGCAACTTGGACCAAGGCCGGCCAACCCACCAACTGTGGCGAACAAGGCATACACTTCTTGGAAGGCTAAGCTCCACAAGTTTTTTAAGCATTACAAAGGGGAAAAGGCTCCGAAAGAGTTTGTGCAAGGAGGAAGGATGGATGAGTGGAATTGGCTTAAGCAACACTTCTTGTCACCTCAGTTTCAGAACGATATGAGACAGAAGATCCTAACAATACTAAGCGAACAACAGCCGGACACTCCAGAGGATGAGCTTCTTCAACAAGTAGACCTCCAATCTCAGCTTGACGCATTTGAGAAGGAAGTTCGGGAGCATGCCCGACAAGCCCAAGAGGAGGCACGACATGCTCAAGAGGAGGCACAACAAGCCCGGGAACAGGCCAAAGTAGCCCAAGAGAAGATTCTTGATTATGAGCGCCGTATACAAATGTTAGAGAAGTTTTTGCAGTCGCAGCCGAGCAGACAAGAAGGCCAACATCTTGAGGTTGATGCTTGA

Protein Analysis

367

Amino Acids

40.87

Weight (kDa)

6.37

Isoelectric Point (pI)

58.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
AccI GTMKAC 2 cut(s) 873, 1027
AciI CCGC 1 cut(s) 122
AclI AACGTT 1 cut(s) 583
AclWI GGATC 2 cut(s) 471, 805
AcoI YGGCCR 2 cut(s) 495, 624
AfaI GTAC 1 cut(s) 298
AfiI CCNNNNNNNGG 3 cut(s) 504, 940, 982
AflII CTTAAG 1 cut(s) 761
AgsI TTSAA 1 cut(s) 866
AjiI CACGTC 1 cut(s) 293
AjnI CCWGG 3 cut(s) 447, 503, 567
AjuI GAANNNNNNNTTGG 2 cut(s) 990, 1022
AluBI AGCT 5 cut(s) 212, 257, 676, 859, 889
AluI AGCT 5 cut(s) 212, 257, 676, 859, 889
Alw26I GTCTC 1 cut(s) 796
AlwI GGATC 2 cut(s) 471, 805
Ama87I CYCGRG 1 cut(s) 975
AoxI GGCC 9 cut(s) 24, 104, 125, 495, 573, 620, 624, 984, 1075
ApeKI GCWGC 2 cut(s) 65, 1057
AspLEI GCGC 1 cut(s) 1023
AspS9I GGNCC 4 cut(s) 125, 314, 419, 614
AsuC2I CCSGG 2 cut(s) 976, 977
AsuHPI GGTGA 4 cut(s) 144, 177, 179, 771
AvaI CYCGRG 1 cut(s) 975
AvaII GGWCC 3 cut(s) 314, 419, 614
BarI GAAGNNNNNNTAC 2 cut(s) 392, 424
BbsI GAAGAC 1 cut(s) 417
BbvI GCAGC 2 cut(s) 77, 1069
BccI CCATC 3 cut(s) 158, 269, 736
BceAI ACGGC 3 cut(s) 114, 135, 1008
BciT130I CCWGG 3 cut(s) 449, 505, 569
BcnI CCSGG 2 cut(s) 976, 977
BcoDI GTCTC 1 cut(s) 796
BfmI CTRYAG 2 cut(s) 207, 280
BfoI RGCGCY 1 cut(s) 1024
BfrI CTTAAG 1 cut(s) 761
BisI GCNGC 2 cut(s) 66, 1058
BlpI GCTNAGC 1 cut(s) 672
BlsI GCNGC 2 cut(s) 67, 1059
Bme1390I CCNGG 5 cut(s) 449, 505, 569, 976, 977
Bme18I GGWCC 3 cut(s) 314, 419, 614
BmeT110I CYCGRG 1 cut(s) 975
BmgBI CACGTC 1 cut(s) 293
BmgT120I GGNCC 4 cut(s) 125, 314, 419, 614
BmiI GGNNCC 4 cut(s) 79, 126, 502, 714
BmrFI CCNGG 5 cut(s) 449, 505, 569, 976, 977
BmsI GCATC 1 cut(s) 1084
BpiI GAAGAC 1 cut(s) 417
BpmI CTGGAG 1 cut(s) 831
Bpu10I CCTNAGC 1 cut(s) 258
Bpu1102I GCTNAGC 1 cut(s) 672
BpuEI CTTGAG 1 cut(s) 939
BpuMI CCSGG 2 cut(s) 976, 977
BsaBI GATNNNNATC 1 cut(s) 52
BsaJI CCNNGG 5 cut(s) 27, 504, 514, 617, 975
BsaWI WCCGGW 2 cut(s) 131, 311
BsaXI ACNNNNNCTCC 6 cut(s) 23, 53, 126, 156, 301, 331
Bsc4I CCNNNNNNNGG 3 cut(s) 504, 940, 982
Bse118I RCCGGY 2 cut(s) 380, 622
Bse1I ACTGG 1 cut(s) 225
Bse8I GATNNNNATC 1 cut(s) 52
BseBI CCWGG 3 cut(s) 449, 505, 569
BseDI CCNNGG 5 cut(s) 27, 504, 514, 617, 975
BseGI GGATG 4 cut(s) 229, 747, 751, 859
BseJI GATNNNNATC 1 cut(s) 52
BseLI CCNNNNNNNGG 3 cut(s) 504, 940, 982
BseMII CTCAG 4 cut(s) 33, 272, 797, 899
BseNI ACTGG 1 cut(s) 225
BseRI GAGGAG 2 cut(s) 953, 974
BseX3I CGGCCG 1 cut(s) 495
BseXI GCAGC 2 cut(s) 77, 1069
BsgI GTGCAG 1 cut(s) 84
Bsh1285I CGRYCG 3 cut(s) 56, 132, 498
BshFI GGCC 9 cut(s) 26, 106, 127, 497, 575, 622, 626, 986, 1077
BsiEI CGRYCG 3 cut(s) 56, 132, 498
BsiHKCI CYCGRG 1 cut(s) 975
BsiSI CCGG 8 cut(s) 81, 132, 312, 381, 498, 623, 839, 976
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 3 cut(s) 504, 940, 982
BsmAI GTCTC 1 cut(s) 796
BsmFI GGGAC 1 cut(s) 233
BsmI GAATGC 1 cut(s) 515
BsnI GGCC 9 cut(s) 26, 106, 127, 497, 575, 622, 626, 986, 1077
BsoBI CYCGRG 1 cut(s) 975
Bsp143I GATC 5 cut(s) 53, 234, 387, 476, 810
Bsp1720I GCTNAGC 1 cut(s) 672
BspACI CCGC 1 cut(s) 122
BspANI GGCC 9 cut(s) 26, 106, 127, 497, 575, 622, 626, 986, 1077
BspCNI CTCAG 4 cut(s) 34, 271, 796, 898
BspLI GGNNCC 4 cut(s) 79, 126, 502, 714
BspPI GGATC 2 cut(s) 471, 805
BspTI CTTAAG 1 cut(s) 761
BsrFI RCCGGY 2 cut(s) 380, 622
BsrI ACTGG 1 cut(s) 225
BssAI RCCGGY 2 cut(s) 380, 622
BssECI CCNNGG 5 cut(s) 27, 504, 514, 617, 975
BssMI GATC 5 cut(s) 53, 234, 387, 476, 810
BssNAI GTATAC 1 cut(s) 1028
BssT1I CCWWGG 2 cut(s) 27, 617
Bst1107I GTATAC 1 cut(s) 1028
Bst2UI CCWGG 3 cut(s) 449, 505, 569
Bst4CI ACNGT 3 cut(s) 268, 423, 640
BstAFI CTTAAG 1 cut(s) 761
BstAPI GCANNNNNTGC 2 cut(s) 465, 950
BstC8I GCNNGC 3 cut(s) 597, 624, 921
BstDEI CTNAG 7 cut(s) 42, 258, 300, 672, 783, 824, 885
BstF5I GGATG 4 cut(s) 229, 747, 751, 859
BstH2I RGCGCY 1 cut(s) 1024
BstHHI GCGC 1 cut(s) 1023
BstKTI GATC 5 cut(s) 56, 237, 390, 479, 813
BstMAI GTCTC 1 cut(s) 796
BstMBI GATC 5 cut(s) 53, 234, 387, 476, 810
BstMCI CGRYCG 3 cut(s) 56, 132, 498
BstNI CCWGG 3 cut(s) 449, 505, 569
BstNSI RCATGY 2 cut(s) 923, 953
BstSCI CCNGG 5 cut(s) 447, 503, 567, 974, 975
BstSFI CTRYAG 2 cut(s) 207, 280
BstV1I GCAGC 2 cut(s) 77, 1069
BstV2I GAAGAC 1 cut(s) 417
BstX2I RGATCY 1 cut(s) 810
BstYI RGATCY 1 cut(s) 810
BstZ17I GTATAC 1 cut(s) 1028
BstZI CGGCCG 1 cut(s) 495
BsuRI GGCC 9 cut(s) 26, 106, 127, 497, 575, 622, 626, 986, 1077
BtrI CACGTC 1 cut(s) 293
BtsCI GGATG 4 cut(s) 229, 747, 751, 859
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 2 cut(s) 218, 441
Cac8I GCNNGC 3 cut(s) 597, 624, 921
CfoI GCGC 1 cut(s) 1023
Cfr10I RCCGGY 2 cut(s) 380, 622
Cfr13I GGNCC 4 cut(s) 125, 314, 419, 614
Cfr9I CCCGGG 1 cut(s) 975
CseI GACGC 3 cut(s) 22, 27, 902
Csp6I GTAC 1 cut(s) 297
CviAII CATG 2 cut(s) 920, 950
CviQI GTAC 1 cut(s) 297
DdeI CTNAG 7 cut(s) 42, 258, 300, 672, 783, 824, 885
DpnI GATC 5 cut(s) 55, 236, 389, 478, 812
DpnII GATC 5 cut(s) 53, 234, 387, 476, 810
DraI TTTAAA 1 cut(s) 580
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 2 cut(s) 495, 624
EagI CGGCCG 1 cut(s) 495
EclXI CGGCCG 1 cut(s) 495
Eco130I CCWWGG 2 cut(s) 27, 617
Eco147I AGGCCT 1 cut(s) 575
Eco47I GGWCC 3 cut(s) 314, 419, 614
Eco52I CGGCCG 1 cut(s) 495
Eco88I CYCGRG 1 cut(s) 975
EcoRII CCWGG 3 cut(s) 447, 503, 567
EcoT14I CCWWGG 2 cut(s) 27, 617
ErhI CCWWGG 2 cut(s) 27, 617
FaeI CATG 2 cut(s) 923, 953
FaiI YATR 9 cut(s) 402, 470, 591, 655, 800, 921, 951, 1017, 1028
FalI AAGNNNNNCTT 2 cut(s) 755, 787
FaqI GGGAC 1 cut(s) 233
FatI CATG 2 cut(s) 919, 949
FauI CCCGC 1 cut(s) 115
FblI GTMKAC 2 cut(s) 873, 1027
Fnu4HI GCNGC 2 cut(s) 66, 1058
FokI GGATG 4 cut(s) 236, 754, 758, 866
FseI GGCCGGCC 1 cut(s) 626
Fsp4HI GCNGC 2 cut(s) 66, 1058
GlaI GCGC 1 cut(s) 1022
GluI GCNGC 2 cut(s) 66, 1058
GsuI CTGGAG 1 cut(s) 831
HaeII RGCGCY 1 cut(s) 1024
HaeIII GGCC 9 cut(s) 26, 106, 127, 497, 575, 622, 626, 986, 1077
HapII CCGG 8 cut(s) 81, 132, 312, 381, 498, 623, 839, 976
HgaI GACGC 3 cut(s) 22, 27, 902
HhaI GCGC 1 cut(s) 1023
Hin1II CATG 2 cut(s) 923, 953
Hin6I GCGC 1 cut(s) 1021
HinP1I GCGC 1 cut(s) 1021
HinfI GANTC 1 cut(s) 1006
HpaII CCGG 8 cut(s) 81, 132, 312, 381, 498, 623, 839, 976
HphI GGTGA 4 cut(s) 144, 177, 179, 771
Hpy166II GTNNAC 4 cut(s) 309, 439, 874, 1028
Hpy188I TCNGA 5 cut(s) 43, 274, 416, 717, 792
Hpy188III TCNNGA 5 cut(s) 848, 914, 956, 1010, 1085
Hpy8I GTNNAC 4 cut(s) 309, 439, 874, 1028
Hpy99I CGWCG 4 cut(s) 160, 242, 294, 336
HpyAV CCTTC 5 cut(s) 192, 661, 732, 898, 1067
HpyCH4III ACNGT 3 cut(s) 268, 423, 640
HpyCH4IV ACGT 2 cut(s) 292, 583
HpyCH4V TGCA 5 cut(s) 65, 378, 468, 730, 1051
HpyF3I CTNAG 7 cut(s) 42, 258, 300, 672, 783, 824, 885
HpySE526I ACGT 2 cut(s) 292, 583
Hsp92II CATG 2 cut(s) 923, 953
HspAI GCGC 1 cut(s) 1021
KroI GCCGGC 1 cut(s) 622
KroNI GCCGGC 1 cut(s) 624
Kzo9I GATC 5 cut(s) 53, 234, 387, 476, 810
LmnI GCTCC 4 cut(s) 217, 681, 718, 916
Lsp1109I GCAGC 2 cut(s) 77, 1069
LweI GCATC 1 cut(s) 1084
MaeII ACGT 2 cut(s) 292, 583
MaeIII GTNAC 3 cut(s) 150, 518, 777
MalI GATC 5 cut(s) 55, 236, 389, 478, 812
MboI GATC 5 cut(s) 53, 234, 387, 476, 810
MboII GAAGA 6 cut(s) 417, 541, 544, 820, 854, 1015
MflI RGATCY 1 cut(s) 810
MluCI AATT 5 cut(s) 71, 393, 471, 488, 754
MroNI GCCGGC 1 cut(s) 622
MseI TTAA 3 cut(s) 579, 690, 762
MspCI CTTAAG 1 cut(s) 761
MspI CCGG 8 cut(s) 81, 132, 312, 381, 498, 623, 839, 976
MspR9I CCNGG 5 cut(s) 449, 505, 569, 976, 977
Mva1269I GAATGC 1 cut(s) 515
MvaI CCWGG 3 cut(s) 449, 505, 569
NaeI GCCGGC 1 cut(s) 624
NciI CCSGG 2 cut(s) 976, 977
NdeII GATC 5 cut(s) 53, 234, 387, 476, 810
NgoMIV GCCGGC 1 cut(s) 622
NlaIII CATG 2 cut(s) 923, 953
NlaIV GGNNCC 4 cut(s) 79, 126, 502, 714
NmeAIII GCCGAG 1 cut(s) 1086
NmuCI GTSAC 2 cut(s) 150, 777
NspI RCATGY 2 cut(s) 923, 953
PaeI GCATGC 1 cut(s) 923
PceI AGGCCT 1 cut(s) 575
PcsI WCGNNNNNNNCGW 3 cut(s) 125, 237, 243
PctI GAATGC 1 cut(s) 515
PdiI GCCGGC 1 cut(s) 624
PfeI GAWTC 1 cut(s) 1006
PflFI GACNNNGTC 2 cut(s) 242, 356
PkrI GCNGC 2 cut(s) 67, 1059
Ple19I CGATCG 1 cut(s) 56
Psp1406I AACGTT 1 cut(s) 583
Psp6I CCWGG 3 cut(s) 447, 503, 567
PspGI CCWGG 3 cut(s) 447, 503, 567
PspN4I GGNNCC 4 cut(s) 79, 126, 502, 714
PspPI GGNCC 4 cut(s) 125, 314, 419, 614
PsrI GAACNNNNNNTAC 2 cut(s) 638, 670
PsuI RGATCY 1 cut(s) 810
PsyI GACNNNGTC 2 cut(s) 242, 356
PvuI CGATCG 1 cut(s) 56
RigI GGCCGGCC 1 cut(s) 626
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
SaqAI TTAA 3 cut(s) 579, 690, 762
SatI GCNGC 2 cut(s) 66, 1058
Sau3AI GATC 5 cut(s) 53, 234, 387, 476, 810
Sau96I GGNCC 4 cut(s) 125, 314, 419, 614
ScrFI CCNGG 5 cut(s) 449, 505, 569, 976, 977
SfaNI GCATC 1 cut(s) 1084
SfcI CTRYAG 2 cut(s) 207, 280
SinI GGWCC 3 cut(s) 314, 419, 614
SmaI CCCGGG 1 cut(s) 977
SmlI CTYRAG 3 cut(s) 761, 954, 1085
SmoI CTYRAG 3 cut(s) 761, 954, 1085
SphI GCATGC 1 cut(s) 923
Sse9I AATT 5 cut(s) 71, 393, 471, 488, 754
SseBI AGGCCT 1 cut(s) 575
SsiI CCGC 1 cut(s) 122
StuI AGGCCT 1 cut(s) 575
StyD4I CCNGG 5 cut(s) 447, 503, 567, 974, 975
StyI CCWWGG 2 cut(s) 27, 617
TaaI ACNGT 3 cut(s) 268, 423, 640
TaiI ACGT 2 cut(s) 295, 586
TaqI TCGA 6 cut(s) 197, 237, 289, 342, 390, 475
TasI AATT 5 cut(s) 71, 393, 471, 488, 754
TfiI GAWTC 1 cut(s) 1006
Tru1I TTAA 3 cut(s) 579, 690, 762
Tru9I TTAA 3 cut(s) 579, 690, 762
TscAI CASTG 2 cut(s) 225, 441
TseFI GTSAC 2 cut(s) 150, 777
TseI GCWGC 2 cut(s) 65, 1057
Tsp45I GTSAC 2 cut(s) 150, 777
TspDTI ATGAA 2 cut(s) 400, 417
TspGWI ACGGA 1 cut(s) 104
TspMI CCCGGG 1 cut(s) 975
TspRI CASTG 2 cut(s) 225, 441
Tth111I GACNNNGTC 2 cut(s) 242, 356
Vha464I CTTAAG 1 cut(s) 761
VpaK11BI GGWCC 3 cut(s) 314, 419, 614
XceI RCATGY 2 cut(s) 923, 953
XmaI CCCGGG 1 cut(s) 975
XmiI GTMKAC 2 cut(s) 873, 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.