FvH4_5g19450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000776
Physical Location & Seq
Reverse (-)
11282753 .. 11285787
3035 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19450.t1

Sequence Viewer

Length: 753 bp
ATGAGTGGGAGTGGCTTTGCACGCATTTTGAATCGGACAAGTACAAGGTCTGAAGTTGTTTTGGTAATGGTAGCCTCAAAATCTCAGTATGATAGCCATAGACGATCGGTTGCCAACTCCACCAACCGTGGTAAGAAGGAGTTAGAGCACCACTCAGGGAGGAAACCTATCATTTACAGGGTGGCCGAGCTAAGGGATAAGGGTACTTCATTACCGGTGGTTGACGTGTACCATGTGACATACTACATCAACCAGCCTAAAGCTGCTGAGCATTATGAAAAGTTGAAGGAACATGGTGCTATTGCCAAGACTTTGCAGAGCACTCAACACCCGGACATCCCACCGGATCAGCTACCTCCTTTGGACTGGCCAACTCAACTAAGTGTTGTCAAAAACGCTATGGGAGAAACAAAAGGGTCTTACATTCGTGGTATTGGACGAGCAGGCGTCCTAGAGAAGAGCATAAGGTCAACATCTTCCCCTTCACGCTCTCGACCGAATAATCAAGCGATGGCAGCGATAGAGGCTGCTAGAAAGGAGGCGGCTAAGGCACATGAGAGGGCCCAAAAAGCCAAGAAGATCGCTGAGCAGTCTGCTGCAGATTATCAAAATTTGAAGTTGCAAATGGATCAAATCATGGCTCGAATAGGGCTACAGCCTATGTGTTCACCCTCAGTCCCAAGCCAACAACCTCGAGACGACGATGATGATAGGGGCCTTGACACTTCTCCGATTAGTTTAGGAAATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

251

Amino Acids

27.63

Weight (kDa)

9.66

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 542
AclWI GGATC 2 cut(s) 354, 636
AcoI YGGCCR 2 cut(s) 183, 368
AcsI RAATTY 1 cut(s) 610
AcuI CTGAAG 1 cut(s) 72
AcyI GRCGYC 1 cut(s) 447
AfaI GTAC 3 cut(s) 43, 205, 230
AfiI CCNNNNNNNGG 1 cut(s) 192
AflIII ACRYGT 1 cut(s) 225
AgeI ACCGGT 1 cut(s) 214
AgsI TTSAA 3 cut(s) 31, 286, 616
AjiI CACGTC 1 cut(s) 226
AluBI AGCT 3 cut(s) 190, 263, 352
AluI AGCT 3 cut(s) 190, 263, 352
Alw21I GWGCWC 2 cut(s) 150, 323
Alw26I GTCTC 1 cut(s) 690
AlwI GGATC 2 cut(s) 354, 636
Ama87I CYCGRG 1 cut(s) 693
AoxI GGCC 4 cut(s) 183, 368, 561, 715
ApaI GGGCCC 1 cut(s) 565
ApeKI GCWGC 4 cut(s) 263, 515, 527, 596
ApoI RAATTY 1 cut(s) 610
AsiGI ACCGGT 1 cut(s) 214
AspS9I GGNCC 3 cut(s) 561, 562, 715
AsuC2I CCSGG 1 cut(s) 332
AsuHPI GGTGA 1 cut(s) 660
AvaI CYCGRG 1 cut(s) 693
BaeGI GKGCMC 1 cut(s) 565
BalI TGGCCA 1 cut(s) 370
BanII GRGCYC 1 cut(s) 565
Bbv12I GWGCWC 2 cut(s) 150, 323
BbvI GCAGC 4 cut(s) 250, 514, 527, 583
BccI CCATC 1 cut(s) 505
BcnI CCSGG 1 cut(s) 332
BcoDI GTCTC 1 cut(s) 690
BfaI CTAG 2 cut(s) 452, 531
BfmI CTRYAG 2 cut(s) 597, 653
BisI GCNGC 5 cut(s) 264, 516, 528, 543, 597
BlpI GCTNAGC 2 cut(s) 267, 585
BlsI GCNGC 5 cut(s) 265, 517, 529, 544, 598
Bme1390I CCNGG 1 cut(s) 332
BmeT110I CYCGRG 1 cut(s) 693
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 3 cut(s) 561, 562, 715
BmiI GGNNCC 2 cut(s) 563, 716
BmrFI CCNGG 1 cut(s) 332
BplI GAGNNNNNCTC 2 cut(s) 137, 169
Bpu10I CCTNAGC 2 cut(s) 191, 546
Bpu1102I GCTNAGC 2 cut(s) 267, 585
BpuMI CCSGG 1 cut(s) 332
BsaHI GRCGYC 1 cut(s) 447
BsaJI CCNNGG 1 cut(s) 127
BsaWI WCCGGW 2 cut(s) 214, 343
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 371
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMII CTCAG 5 cut(s) 98, 168, 258, 576, 687
BseNI ACTGG 1 cut(s) 371
BseSI GKGCMC 1 cut(s) 565
BseXI GCAGC 4 cut(s) 250, 514, 527, 583
Bsh1285I CGRYCG 2 cut(s) 107, 497
BshFI GGCC 4 cut(s) 185, 370, 563, 717
BshTI ACCGGT 1 cut(s) 214
BsiEI CGRYCG 2 cut(s) 107, 497
BsiHKAI GWGCWC 2 cut(s) 150, 323
BsiHKCI CYCGRG 1 cut(s) 693
BsiSI CCGG 3 cut(s) 215, 332, 344
BslFI GGGAC 1 cut(s) 662
BslI CCNNNNNNNGG 1 cut(s) 192
BsmAI GTCTC 1 cut(s) 690
BsmBI CGTCTC 1 cut(s) 690
BsmFI GGGAC 1 cut(s) 662
BsnI GGCC 4 cut(s) 185, 370, 563, 717
BsoBI CYCGRG 1 cut(s) 693
Bsp120I GGGCCC 1 cut(s) 561
Bsp1286I GDGCHC 3 cut(s) 150, 323, 565
Bsp143I GATC 4 cut(s) 104, 346, 579, 628
Bsp1720I GCTNAGC 2 cut(s) 267, 585
BspACI CCGC 1 cut(s) 542
BspANI GGCC 4 cut(s) 185, 370, 563, 717
BspCNI CTCAG 5 cut(s) 97, 167, 259, 577, 686
BspLI GGNNCC 2 cut(s) 563, 716
BspMAI CTGCAG 1 cut(s) 601
BspPI GGATC 2 cut(s) 354, 636
BspQI GCTCTTC 1 cut(s) 452
BsrFI RCCGGY 1 cut(s) 214
BsrI ACTGG 1 cut(s) 371
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 4 cut(s) 104, 346, 579, 628
BssNI GRCGYC 1 cut(s) 447
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 452
BstACI GRCGYC 1 cut(s) 447
BstC8I GCNNGC 2 cut(s) 22, 445
BstDEI CTNAG 8 cut(s) 84, 154, 191, 267, 380, 546, 585, 673
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 1 cut(s) 336
BstKTI GATC 4 cut(s) 107, 349, 582, 631
BstMAI GTCTC 1 cut(s) 690
BstMBI GATC 4 cut(s) 104, 346, 579, 628
BstMCI CGRYCG 2 cut(s) 107, 497
BstMWI GCNNNNNNNGC 5 cut(s) 21, 515, 524, 548, 569
BstSCI CCNGG 1 cut(s) 330
BstSFI CTRYAG 2 cut(s) 597, 653
BstSLI GKGCMC 1 cut(s) 565
BstV1I GCAGC 4 cut(s) 250, 514, 527, 583
BsuRI GGCC 4 cut(s) 185, 370, 563, 717
BtgI CCRYGG 1 cut(s) 127
BtgZI GCGATG 1 cut(s) 524
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 1 cut(s) 336
Cac8I GCNNGC 2 cut(s) 22, 445
Cfr10I RCCGGY 1 cut(s) 214
Cfr13I GGNCC 3 cut(s) 561, 562, 715
CseI GACGC 1 cut(s) 436
Csp6I GTAC 3 cut(s) 42, 204, 229
CspAI ACCGGT 1 cut(s) 214
CviAII CATG 4 cut(s) 233, 293, 554, 637
CviQI GTAC 3 cut(s) 42, 204, 229
DdeI CTNAG 8 cut(s) 84, 154, 191, 267, 380, 546, 585, 673
DpnI GATC 4 cut(s) 106, 348, 581, 630
DpnII GATC 4 cut(s) 104, 346, 579, 628
EaeI YGGCCR 2 cut(s) 183, 368
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
Eco24I GRGCYC 1 cut(s) 565
Eco57I CTGAAG 1 cut(s) 72
Eco88I CYCGRG 1 cut(s) 693
EcoO109I RGGNCCY 2 cut(s) 561, 715
EcoT38I GRGCYC 1 cut(s) 565
Esp3I CGTCTC 1 cut(s) 690
FaeI CATG 4 cut(s) 236, 296, 557, 640
FaqI GGGAC 1 cut(s) 662
FatI CATG 4 cut(s) 232, 292, 553, 636
Fnu4HI GCNGC 5 cut(s) 264, 516, 528, 543, 597
FokI GGATG 1 cut(s) 323
FriOI GRGCYC 1 cut(s) 565
Fsp4HI GCNGC 5 cut(s) 264, 516, 528, 543, 597
FspBI CTAG 2 cut(s) 452, 531
GluI GCNGC 5 cut(s) 264, 516, 528, 543, 597
HaeIII GGCC 4 cut(s) 185, 370, 563, 717
HapII CCGG 3 cut(s) 215, 332, 344
HgaI GACGC 1 cut(s) 436
Hin1I GRCGYC 1 cut(s) 447
Hin1II CATG 4 cut(s) 236, 296, 557, 640
HincII GTYRAC 2 cut(s) 223, 471
HindII GTYRAC 2 cut(s) 223, 471
HinfI GANTC 1 cut(s) 31
HpaII CCGG 3 cut(s) 215, 332, 344
HphI GGTGA 1 cut(s) 660
Hpy166II GTNNAC 4 cut(s) 223, 229, 471, 668
Hpy188I TCNGA 3 cut(s) 36, 52, 732
Hpy188III TCNNGA 2 cut(s) 492, 695
Hpy8I GTNNAC 4 cut(s) 223, 229, 471, 668
Hpy99I CGWCG 1 cut(s) 704
HpyAV CCTTC 3 cut(s) 130, 280, 492
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 4 cut(s) 20, 316, 599, 622
HpyF10VI GCNNNNNNNGC 5 cut(s) 21, 515, 524, 548, 569
HpyF3I CTNAG 8 cut(s) 84, 154, 191, 267, 380, 546, 585, 673
HpySE526I ACGT 1 cut(s) 225
Hsp92I GRCGYC 1 cut(s) 447
Hsp92II CATG 4 cut(s) 236, 296, 557, 640
Kzo9I GATC 4 cut(s) 104, 346, 579, 628
LguI GCTCTTC 1 cut(s) 452
LpnPI CCDG 8 cut(s) 141, 163, 228, 266, 345, 352, 357, 429
Lsp1109I GCAGC 4 cut(s) 250, 514, 527, 583
MaeI CTAG 2 cut(s) 452, 531
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 235
MalI GATC 4 cut(s) 106, 348, 581, 630
MboI GATC 4 cut(s) 104, 346, 579, 628
MboII GAAGA 3 cut(s) 468, 469, 589
MhlI GDGCHC 3 cut(s) 150, 323, 565
MlsI TGGCCA 1 cut(s) 370
MluCI AATT 1 cut(s) 610
MluNI TGGCCA 1 cut(s) 370
MnlI CCTC 8 cut(s) 85, 153, 366, 517, 532, 552, 682, 702
Mox20I TGGCCA 1 cut(s) 370
MscI TGGCCA 1 cut(s) 370
Msp20I TGGCCA 1 cut(s) 370
MspI CCGG 3 cut(s) 215, 332, 344
MspR9I CCNGG 1 cut(s) 332
MwoI GCNNNNNNNGC 5 cut(s) 21, 515, 524, 548, 569
NciI CCSGG 1 cut(s) 332
NdeII GATC 4 cut(s) 104, 346, 579, 628
NlaIII CATG 4 cut(s) 236, 296, 557, 640
NlaIV GGNNCC 2 cut(s) 563, 716
NmeAIII GCCGAG 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 235
PaeR7I CTCGAG 1 cut(s) 693
PciSI GCTCTTC 1 cut(s) 452
PfeI GAWTC 1 cut(s) 31
PinAI ACCGGT 1 cut(s) 214
PkrI GCNGC 5 cut(s) 265, 517, 529, 544, 598
Ple19I CGATCG 1 cut(s) 107
PspN4I GGNNCC 2 cut(s) 563, 716
PspOMI GGGCCC 1 cut(s) 561
PspPI GGNCC 3 cut(s) 561, 562, 715
PstI CTGCAG 1 cut(s) 601
PvuI CGATCG 1 cut(s) 107
RsaI GTAC 3 cut(s) 43, 205, 230
RsaNI GTAC 3 cut(s) 42, 204, 229
SapI GCTCTTC 1 cut(s) 452
SatI GCNGC 5 cut(s) 264, 516, 528, 543, 597
Sau3AI GATC 4 cut(s) 104, 346, 579, 628
Sau96I GGNCC 3 cut(s) 561, 562, 715
ScrFI CCNGG 1 cut(s) 332
SduI GDGCHC 3 cut(s) 150, 323, 565
SetI ASST 9 cut(s) 50, 169, 192, 228, 265, 354, 358, 470, 694
SfcI CTRYAG 2 cut(s) 597, 653
Sfr274I CTCGAG 1 cut(s) 693
SlaI CTCGAG 1 cut(s) 693
SmlI CTYRAG 1 cut(s) 693
SmoI CTYRAG 1 cut(s) 693
Sse9I AATT 1 cut(s) 610
SsiI CCGC 1 cut(s) 542
SspMI CTAG 2 cut(s) 452, 531
StyD4I CCNGG 1 cut(s) 330
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 1 cut(s) 228
TaqI TCGA 3 cut(s) 493, 643, 694
TaqII GACCGA 1 cut(s) 511
TasI AATT 1 cut(s) 610
TatI WGTACW 1 cut(s) 41
TauI GCSGC 1 cut(s) 545
TfiI GAWTC 1 cut(s) 31
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 4 cut(s) 263, 515, 527, 596
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 198, 291
XapI RAATTY 1 cut(s) 610
XhoI CTCGAG 1 cut(s) 693
XspI CTAG 2 cut(s) 452, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.