FvH4_6g30100

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000776
Physical Location & Seq
Forward (+)
23255351 .. 23259645
4295 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30100.t1

Sequence Viewer

Length: 1050 bp
ATGCCACCATTGACGAAGAAAAAGCCCAAGAGCTTGCAATATGGATCCTGCACAACGGAAGATACGGCGGCGCCGACGGGAGATGTTGTTCGTGAAACGATTCCACCTCCACCACCAGTATCGATTGCCGAAACAGCTCCGCCACTGGATGAGGACGAGATCGACGATGTCGCACCAGAAGATGAGGAGGCGTTGTCTGATGGTTGTAGCGTTCGACGTGGTACTAAGAAGTCCACCGGACCTCCCCCAAAACGCCGACGAGGGTTCGGCAACTTGGACAAAGTGAAAAGAATTGTGAAATGTACCGGGAAGATCGAAGCAGTGTATGACGAGTTCATCAGAGGACCATCTTCATCATCAGTGAGCAGCCTTCTGGTCAATAGCATTGGTGCAATTATTCGATCCAAAGTCAAATTGTCGACGGGAAACTGGGAATGCCTTGGTGACTTTGAGAAGAAGAAGTTGATAGACGGGCTTACGACACGATCGGCGGCTAACACGACTAACCGTGGTAAGAAGGAGTCGGAGCACCACACAGGGCGGCTACCTATCATCTATAGGGTGGTCCATCACAAAGAGAAGGGTGAGGAATTTCCTGTTATCCCAGCTTACACAGAGTCGTATGATACAATCAACGACCCTAAAGCTACCAAGAATCTTAAGAATGCAAACCCTGATGTCCCAGAGGGTGAGCTCCCACCTTTGGAGTGGTCGATAAACATTAAGGTGCTTGAAGCAGGAGTCGGTAGAAGAGCCGGGAAGGAGATTCGTGGTCTTGGAAGAGCAGGTGTACGAGAGTCATCATCTTCCGCTCCACGTTCTCGAGTTTATGAGGTGGAGGACAGATTACATATTGCTGAGGAGAGGGCCGAAAAAGCCGAGGTGGTTGTGCAGAACCTTAGTCAAGAGATGGCATTGGTGAAGCAGCAACTAGCAGTAGTGATGTCTTTTATGGCGCAGCAGACTAGGTGTCCTCCACAAGTCCCTTCCCAACAACCTCTAAATGAAAATGTTGATGTAGGGAACAACATGGAAGTTGAGAGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

350

Amino Acids

38.32

Weight (kDa)

6.98

Isoelectric Point (pI)

56.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 776
Acc36I ACCTGC 1 cut(s) 776
AccB1I GGYRCC 1 cut(s) 70
AccBSI CCGCTC 1 cut(s) 812
AccI GTMKAC 1 cut(s) 419
AciI CCGC 5 cut(s) 68, 140, 491, 541, 810
AclWI GGATC 3 cut(s) 39, 52, 396
AcsI RAATTY 1 cut(s) 590
AcyI GRCGYC 1 cut(s) 71
AfaI GTAC 3 cut(s) 223, 304, 792
AfiI CCNNNNNNNGG 1 cut(s) 703
AflII CTTAAG 1 cut(s) 659
AgsI TTSAA 1 cut(s) 734
AhdI GACNNNNNGTC 1 cut(s) 969
AjiI CACGTC 1 cut(s) 218
AloI GAACNNNNNNTCC 2 cut(s) 72, 104
AluBI AGCT 5 cut(s) 33, 137, 608, 647, 694
AluI AGCT 5 cut(s) 33, 137, 608, 647, 694
Alw21I GWGCWC 2 cut(s) 531, 696
AlwI GGATC 3 cut(s) 39, 52, 396
Ama87I CYCGRG 1 cut(s) 822
AoxI GGCC 1 cut(s) 867
ApeKI GCWGC 3 cut(s) 366, 925, 958
ApoI RAATTY 1 cut(s) 590
Asp700I GAANNNNTTC 1 cut(s) 99
AspLEI GCGC 2 cut(s) 73, 958
AspS9I GGNCC 4 cut(s) 239, 344, 565, 867
AsuC2I CCSGG 2 cut(s) 307, 757
AsuHPI GGTGA 4 cut(s) 455, 596, 701, 931
AvaI CYCGRG 1 cut(s) 822
AvaII GGWCC 3 cut(s) 239, 344, 565
BamHI GGATCC 1 cut(s) 44
BanI GGYRCC 1 cut(s) 70
BanII GRGCYC 1 cut(s) 696
Bbv12I GWGCWC 2 cut(s) 531, 696
BbvCI CCTCAGC 1 cut(s) 858
BbvI GCAGC 3 cut(s) 378, 937, 970
BccI CCATC 4 cut(s) 194, 355, 576, 904
BceAI ACGGC 1 cut(s) 81
BcnI CCSGG 2 cut(s) 307, 757
BfaI CTAG 3 cut(s) 932, 966, 1048
BfmI CTRYAG 1 cut(s) 556
BfoI RGCGCY 1 cut(s) 74
BfrI CTTAAG 1 cut(s) 659
BfuAI ACCTGC 1 cut(s) 776
BisI GCNGC 6 cut(s) 69, 367, 492, 542, 926, 959
BlsI GCNGC 6 cut(s) 70, 368, 493, 543, 927, 960
Bme1390I CCNGG 2 cut(s) 307, 757
Bme18I GGWCC 3 cut(s) 239, 344, 565
BmeRI GACNNNNNGTC 1 cut(s) 969
BmeT110I CYCGRG 1 cut(s) 822
BmgBI CACGTC 1 cut(s) 218
BmgT120I GGNCC 4 cut(s) 239, 344, 565, 867
BmiI GGNNCC 2 cut(s) 46, 72
BmrFI CCNGG 2 cut(s) 307, 757
BmrI ACTGGG 1 cut(s) 439
BmuI ACTGGG 1 cut(s) 439
Bpu10I CCTNAGC 1 cut(s) 858
BpuMI CCSGG 2 cut(s) 307, 757
Bsa29I ATCGAT 1 cut(s) 122
BsaHI GRCGYC 1 cut(s) 71
BsaJI CCNNGG 3 cut(s) 439, 508, 879
BsaWI WCCGGW 1 cut(s) 236
BsaXI ACNNNNNCTCC 6 cut(s) 72, 102, 179, 209, 226, 256
Bsc4I CCNNNNNNNGG 1 cut(s) 703
Bse1I ACTGG 3 cut(s) 116, 150, 434
BseCI ATCGAT 1 cut(s) 122
BseDI CCNNGG 3 cut(s) 439, 508, 879
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 703
BseMII CTCAG 1 cut(s) 849
BseNI ACTGG 3 cut(s) 116, 150, 434
BseRI GAGGAG 2 cut(s) 200, 875
BseXI GCAGC 3 cut(s) 378, 937, 970
BseYI CCCAGC 1 cut(s) 604
BsgI GTGCAG 2 cut(s) 34, 911
Bsh1285I CGRYCG 1 cut(s) 488
BshFI GGCC 1 cut(s) 869
BshNI GGYRCC 1 cut(s) 70
BshVI ATCGAT 1 cut(s) 122
BsiEI CGRYCG 1 cut(s) 488
BsiHKAI GWGCWC 2 cut(s) 531, 696
BsiHKCI CYCGRG 1 cut(s) 822
BsiSI CCGG 3 cut(s) 237, 306, 756
BslFI GGGAC 2 cut(s) 665, 968
BslI CCNNNNNNNGG 1 cut(s) 703
BsmFI GGGAC 2 cut(s) 665, 968
BsmI GAATGC 2 cut(s) 440, 670
BsnI GGCC 1 cut(s) 869
BsoBI CYCGRG 1 cut(s) 822
Bsp1286I GDGCHC 2 cut(s) 531, 696
Bsp143I GATC 5 cut(s) 44, 159, 312, 401, 485
BspACI CCGC 5 cut(s) 68, 140, 491, 541, 810
BspANI GGCC 1 cut(s) 869
BspCNI CTCAG 1 cut(s) 850
BspDI ATCGAT 1 cut(s) 122
BspLI GGNNCC 2 cut(s) 46, 72
BspMI ACCTGC 1 cut(s) 776
BspPI GGATC 3 cut(s) 39, 52, 396
BspQI GCTCTTC 2 cut(s) 745, 775
BspT107I GGYRCC 1 cut(s) 70
BspTI CTTAAG 1 cut(s) 659
BsrBI CCGCTC 1 cut(s) 812
BsrI ACTGG 3 cut(s) 116, 150, 434
BssECI CCNNGG 3 cut(s) 439, 508, 879
BssMI GATC 5 cut(s) 44, 159, 312, 401, 485
BssNI GRCGYC 1 cut(s) 71
BssT1I CCWWGG 1 cut(s) 439
Bst4CI ACNGT 1 cut(s) 509
Bst6I CTCTTC 2 cut(s) 745, 775
BstACI GRCGYC 1 cut(s) 71
BstAFI CTTAAG 1 cut(s) 659
BstC8I GCNNGC 1 cut(s) 35
BstDEI CTNAG 3 cut(s) 225, 858, 899
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 1 cut(s) 154
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 2 cut(s) 73, 958
BstKTI GATC 5 cut(s) 47, 162, 315, 404, 488
BstMBI GATC 5 cut(s) 44, 159, 312, 401, 485
BstMCI CGRYCG 1 cut(s) 488
BstMWI GCNNNNNNNGC 2 cut(s) 134, 875
BstSCI CCNGG 2 cut(s) 305, 755
BstSFI CTRYAG 1 cut(s) 556
BstV1I GCAGC 3 cut(s) 378, 937, 970
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
Bsu15I ATCGAT 1 cut(s) 122
BsuRI GGCC 1 cut(s) 869
BsuTUI ATCGAT 1 cut(s) 122
BtgI CCRYGG 1 cut(s) 508
BtrI CACGTC 1 cut(s) 218
BtsCI GGATG 1 cut(s) 154
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 3 cut(s) 143, 327, 366
BveI ACCTGC 1 cut(s) 776
Cac8I GCNNGC 1 cut(s) 35
CfoI GCGC 2 cut(s) 73, 958
Cfr13I GGNCC 4 cut(s) 239, 344, 565, 867
ClaI ATCGAT 1 cut(s) 122
Csp6I GTAC 3 cut(s) 222, 303, 791
CviAII CATG 1 cut(s) 1030
CviQI GTAC 3 cut(s) 222, 303, 791
DdeI CTNAG 3 cut(s) 225, 858, 899
DinI GGCGCC 1 cut(s) 72
DpnI GATC 5 cut(s) 46, 161, 314, 403, 487
DpnII GATC 5 cut(s) 44, 159, 312, 401, 485
DriI GACNNNNNGTC 1 cut(s) 969
Eam1104I CTCTTC 2 cut(s) 745, 775
Eam1105I GACNNNNNGTC 1 cut(s) 969
EarI CTCTTC 2 cut(s) 745, 775
EciI GGCGGA 1 cut(s) 129
Ecl136II GAGCTC 1 cut(s) 694
Eco130I CCWWGG 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 696
Eco47I GGWCC 3 cut(s) 239, 344, 565
Eco53kI GAGCTC 1 cut(s) 694
Eco88I CYCGRG 1 cut(s) 822
EcoICRI GAGCTC 1 cut(s) 694
EcoT14I CCWWGG 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 696
EgeI GGCGCC 1 cut(s) 72
EheI GGCGCC 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 439
FaeI CATG 1 cut(s) 1033
FaiI YATR 8 cut(s) 42, 327, 558, 624, 831, 852, 953, 1031
FaqI GGGAC 2 cut(s) 665, 968
FatI CATG 1 cut(s) 1029
FblI GTMKAC 1 cut(s) 419
Fnu4HI GCNGC 6 cut(s) 69, 367, 492, 542, 926, 959
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 696
Fsp4HI GCNGC 6 cut(s) 69, 367, 492, 542, 926, 959
FspBI CTAG 3 cut(s) 932, 966, 1048
GlaI GCGC 2 cut(s) 72, 957
GluI GCNGC 6 cut(s) 69, 367, 492, 542, 926, 959
GsaI CCCAGC 1 cut(s) 608
HaeII RGCGCY 1 cut(s) 74
HaeIII GGCC 1 cut(s) 869
HapII CCGG 3 cut(s) 237, 306, 756
HhaI GCGC 2 cut(s) 73, 958
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 1 cut(s) 1033
Hin6I GCGC 2 cut(s) 71, 956
HinP1I GCGC 2 cut(s) 71, 956
HincII GTYRAC 1 cut(s) 420
HindII GTYRAC 1 cut(s) 420
HinfI GANTC 7 cut(s) 100, 521, 617, 655, 741, 766, 797
HpaII CCGG 3 cut(s) 237, 306, 756
HphI GGTGA 4 cut(s) 455, 596, 701, 931
Hpy166II GTNNAC 3 cut(s) 234, 420, 791
Hpy188I TCNGA 3 cut(s) 199, 341, 526
Hpy188III TCNNGA 3 cut(s) 92, 822, 905
Hpy8I GTNNAC 3 cut(s) 234, 420, 791
Hpy99I CGWCG 5 cut(s) 79, 167, 219, 261, 424
HpyAV CCTTC 5 cut(s) 380, 511, 574, 754, 996
HpyCH4III ACNGT 1 cut(s) 509
HpyCH4IV ACGT 2 cut(s) 217, 817
HpyCH4V TGCA 5 cut(s) 37, 51, 392, 668, 892
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 875
HpyF3I CTNAG 3 cut(s) 225, 858, 899
HpySE526I ACGT 2 cut(s) 217, 817
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 1 cut(s) 1033
HspAI GCGC 2 cut(s) 71, 956
KasI GGCGCC 1 cut(s) 70
Kzo9I GATC 5 cut(s) 44, 159, 312, 401, 485
LguI GCTCTTC 2 cut(s) 745, 775
LmnI GCTCC 4 cut(s) 142, 526, 699, 817
Lsp1109I GCAGC 3 cut(s) 378, 937, 970
MaeI CTAG 3 cut(s) 932, 966, 1048
MaeII ACGT 2 cut(s) 217, 817
MaeIII GTNAC 1 cut(s) 443
MalI GATC 5 cut(s) 46, 161, 314, 403, 487
MbiI CCGCTC 1 cut(s) 812
MboI GATC 5 cut(s) 44, 159, 312, 401, 485
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 2 cut(s) 531, 696
MluCI AATT 4 cut(s) 291, 393, 413, 590
Mly113I GGCGCC 1 cut(s) 71
MlyI GAGTC 4 cut(s) 530, 626, 750, 806
MmeI TCCRAC 1 cut(s) 504
MroXI GAANNNNTTC 1 cut(s) 99
MseI TTAA 2 cut(s) 660, 723
MslI CAYNNNNRTG 1 cut(s) 725
MspCI CTTAAG 1 cut(s) 659
MspI CCGG 3 cut(s) 237, 306, 756
MspR9I CCNGG 2 cut(s) 307, 757
Mva1269I GAATGC 2 cut(s) 440, 670
MwoI GCNNNNNNNGC 2 cut(s) 134, 875
NarI GGCGCC 1 cut(s) 71
NciI CCSGG 2 cut(s) 307, 757
NdeII GATC 5 cut(s) 44, 159, 312, 401, 485
NlaIII CATG 1 cut(s) 1033
NlaIV GGNNCC 2 cut(s) 46, 72
NmeAIII GCCGAG 1 cut(s) 904
NmuCI GTSAC 1 cut(s) 443
PaeR7I CTCGAG 1 cut(s) 822
PaqCI CACCTGC 1 cut(s) 776
PciSI GCTCTTC 2 cut(s) 745, 775
PcsI WCGNNNNNNNCGW 2 cut(s) 71, 162
PctI GAATGC 2 cut(s) 440, 670
PdmI GAANNNNTTC 1 cut(s) 99
PfeI GAWTC 3 cut(s) 100, 655, 766
PflFI GACNNNGTC 1 cut(s) 167
PkrI GCNGC 6 cut(s) 70, 368, 493, 543, 927, 960
Ple19I CGATCG 1 cut(s) 488
PleI GAGTC 4 cut(s) 529, 625, 749, 805
PluTI GGCGCC 1 cut(s) 74
PpsI GAGTC 4 cut(s) 529, 625, 749, 805
Psp124BI GAGCTC 1 cut(s) 696
PspFI CCCAGC 1 cut(s) 604
PspN4I GGNNCC 2 cut(s) 46, 72
PspPI GGNCC 4 cut(s) 239, 344, 565, 867
PsrI GAACNNNNNNTAC 2 cut(s) 317, 349
PsuI RGATCY 1 cut(s) 44
PsyI GACNNNGTC 1 cut(s) 167
PvuI CGATCG 1 cut(s) 488
RsaI GTAC 3 cut(s) 223, 304, 792
RsaNI GTAC 3 cut(s) 222, 303, 791
RseI CAYNNNNRTG 1 cut(s) 725
SacI GAGCTC 1 cut(s) 696
SalI GTCGAC 1 cut(s) 418
SapI GCTCTTC 2 cut(s) 745, 775
SaqAI TTAA 2 cut(s) 660, 723
SatI GCNGC 6 cut(s) 69, 367, 492, 542, 926, 959
Sau3AI GATC 5 cut(s) 44, 159, 312, 401, 485
Sau96I GGNCC 4 cut(s) 239, 344, 565, 867
SchI GAGTC 4 cut(s) 530, 626, 750, 806
ScrFI CCNGG 2 cut(s) 307, 757
SduI GDGCHC 2 cut(s) 531, 696
SfcI CTRYAG 1 cut(s) 556
SfoI GGCGCC 1 cut(s) 72
Sfr274I CTCGAG 1 cut(s) 822
SinI GGWCC 3 cut(s) 239, 344, 565
SlaI CTCGAG 1 cut(s) 822
SmiMI CAYNNNNRTG 1 cut(s) 725
SmlI CTYRAG 2 cut(s) 659, 822
SmoI CTYRAG 2 cut(s) 659, 822
Sse9I AATT 4 cut(s) 291, 393, 413, 590
SsiI CCGC 5 cut(s) 68, 140, 491, 541, 810
SspDI GGCGCC 1 cut(s) 70
SspMI CTAG 3 cut(s) 932, 966, 1048
SstI GAGCTC 1 cut(s) 696
StyD4I CCNGG 2 cut(s) 305, 755
StyI CCWWGG 1 cut(s) 439
TaaI ACNGT 1 cut(s) 509
TaiI ACGT 2 cut(s) 220, 820
TaqI TCGA 8 cut(s) 122, 162, 214, 315, 400, 419, 713, 823
TasI AATT 4 cut(s) 291, 393, 413, 590
TauI GCSGC 3 cut(s) 71, 494, 544
TfiI GAWTC 3 cut(s) 100, 655, 766
Tru1I TTAA 2 cut(s) 660, 723
Tru9I TTAA 2 cut(s) 660, 723
TscAI CASTG 3 cut(s) 150, 327, 366
TseFI GTSAC 1 cut(s) 443
TseI GCWGC 3 cut(s) 366, 925, 958
Tsp45I GTSAC 1 cut(s) 443
TspDTI ATGAA 3 cut(s) 325, 342, 1020
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 3 cut(s) 150, 327, 366
Tth111I GACNNNGTC 1 cut(s) 167
Vha464I CTTAAG 1 cut(s) 659
VpaK11BI GGWCC 3 cut(s) 239, 344, 565
XapI RAATTY 1 cut(s) 590
XcmI CCANNNNNNNNNTGG 1 cut(s) 705
XhoI CTCGAG 1 cut(s) 822
XmiI GTMKAC 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 99
XspI CTAG 3 cut(s) 932, 966, 1048
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.