FvH4_5g24970

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000776
Physical Location & Seq
Reverse (-)
16478095 .. 16480303
2209 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24970.t1

Sequence Viewer

Length: 594 bp
ATGTACTTGGTCTTGTGCAGAGATGATTGGTTGCCAACATCCAACAACCGTGGTAAGAAGGAGTTGGAGAACCACTCAAGGAGGAAACCTATCATTTACTGGGTGGCCGAGCTTAGGGATAAGAGTGCTTCATTACCGGTGGTTGATGTGTACCCGGTGACATACGACATCAACCAGCCTAAAGCTGTTGAGTATTATGAAAAGTTAAAGGAACAAGCTGCTATTGTCAAGACTTTGCAGAGCACTCAACACCCGGACACCCCACCGGATCAGCTACCTCCTTCGGACTGGCCAACTCAACTAAGTGTTGTGAAAAACGCTATAGGAGAAACAAAAGGGTCTTACCTTCGTGGTATTGGACGAGCAGGCGTCCCAGAGAAGAGCAGAAGGTCAACATTTTCCCCTTCATGCTCTCGACCGAATAATGAGGCGATGGCAGAGATAGTGGCTGCTAGAAAGGAGGCGGCTAAGGCACAAGAGAAGGCCGAAAAAGCCCAAAAGATCGCTGAGCAGTTTGCTACAGATTCTCAAGTGTTGAAGTTGCAAATGGATCAAATCATGGCTCGAATAGGGCTACAGCTACAACAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

198

Amino Acids

22.27

Weight (kDa)

9.11

Isoelectric Point (pI)

47.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 464
AclWI GGATC 2 cut(s) 276, 558
AcoI YGGCCR 2 cut(s) 105, 290
AcyI GRCGYC 1 cut(s) 369
AfaI GTAC 2 cut(s) 5, 152
AfiI CCNNNNNNNGG 1 cut(s) 114
AgeI ACCGGT 1 cut(s) 136
AgsI TTSAA 1 cut(s) 538
AluBI AGCT 5 cut(s) 112, 185, 218, 274, 580
AluI AGCT 5 cut(s) 112, 185, 218, 274, 580
Alw21I GWGCWC 1 cut(s) 245
AlwI GGATC 2 cut(s) 276, 558
AoxI GGCC 3 cut(s) 105, 290, 483
ApeKI GCWGC 2 cut(s) 218, 449
AsiGI ACCGGT 1 cut(s) 136
AsuC2I CCSGG 2 cut(s) 155, 254
AsuHPI GGTGA 1 cut(s) 169
BalI TGGCCA 1 cut(s) 292
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 2 cut(s) 205, 436
BccI CCATC 1 cut(s) 427
BcnI CCSGG 2 cut(s) 155, 254
BfaI CTAG 1 cut(s) 453
BfmI CTRYAG 3 cut(s) 321, 519, 575
BisI GCNGC 3 cut(s) 219, 450, 465
BlpI GCTNAGC 1 cut(s) 507
BlsI GCNGC 3 cut(s) 220, 451, 466
Bme1390I CCNGG 2 cut(s) 155, 254
BmrFI CCNGG 2 cut(s) 155, 254
BmrI ACTGGG 1 cut(s) 109
BmuI ACTGGG 1 cut(s) 109
BplI GAGNNNNNCTC 2 cut(s) 59, 91
Bpu10I CCTNAGC 2 cut(s) 113, 468
Bpu1102I GCTNAGC 1 cut(s) 507
BpuEI CTTGAG 2 cut(s) 61, 513
BpuMI CCSGG 2 cut(s) 155, 254
BsaHI GRCGYC 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 49
BsaWI WCCGGW 2 cut(s) 136, 265
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse118I RCCGGY 1 cut(s) 136
Bse1I ACTGG 2 cut(s) 104, 293
BseDI CCNNGG 1 cut(s) 49
BseGI GGATG 1 cut(s) 38
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 498
BseNI ACTGG 2 cut(s) 104, 293
BseXI GCAGC 2 cut(s) 205, 436
BsgI GTGCAG 1 cut(s) 37
Bsh1285I CGRYCG 1 cut(s) 419
BshFI GGCC 3 cut(s) 107, 292, 485
BshTI ACCGGT 1 cut(s) 136
BsiEI CGRYCG 1 cut(s) 419
BsiHKAI GWGCWC 1 cut(s) 245
BsiSI CCGG 4 cut(s) 137, 155, 254, 266
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 3 cut(s) 107, 292, 485
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 3 cut(s) 268, 501, 550
Bsp1720I GCTNAGC 1 cut(s) 507
BspACI CCGC 1 cut(s) 464
BspANI GGCC 3 cut(s) 107, 292, 485
BspCNI CTCAG 1 cut(s) 499
BspPI GGATC 2 cut(s) 276, 558
BspQI GCTCTTC 1 cut(s) 374
BsrFI RCCGGY 1 cut(s) 136
BsrI ACTGG 2 cut(s) 104, 293
BssAI RCCGGY 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 3 cut(s) 268, 501, 550
BssNI GRCGYC 1 cut(s) 369
Bst4CI ACNGT 1 cut(s) 50
Bst6I CTCTTC 1 cut(s) 374
BstACI GRCGYC 1 cut(s) 369
BstC8I GCNNGC 1 cut(s) 367
BstDEI CTNAG 4 cut(s) 113, 302, 468, 507
BstDSI CCRYGG 1 cut(s) 49
BstF5I GGATG 1 cut(s) 38
BstKTI GATC 3 cut(s) 271, 504, 553
BstMBI GATC 3 cut(s) 268, 501, 550
BstMCI CGRYCG 1 cut(s) 419
BstMWI GCNNNNNNNGC 2 cut(s) 470, 491
BstSCI CCNGG 2 cut(s) 153, 252
BstSFI CTRYAG 3 cut(s) 321, 519, 575
BstV1I GCAGC 2 cut(s) 205, 436
BsuRI GGCC 3 cut(s) 107, 292, 485
BtgI CCRYGG 1 cut(s) 49
BtgZI GCGATG 1 cut(s) 446
BtsCI GGATG 1 cut(s) 38
Cac8I GCNNGC 1 cut(s) 367
Cfr10I RCCGGY 1 cut(s) 136
CseI GACGC 1 cut(s) 358
Csp6I GTAC 2 cut(s) 4, 151
CspAI ACCGGT 1 cut(s) 136
CspCI CAANNNNNGTGG 2 cut(s) 31, 66
CviAII CATG 2 cut(s) 408, 559
CviQI GTAC 2 cut(s) 4, 151
DdeI CTNAG 4 cut(s) 113, 302, 468, 507
DpnI GATC 3 cut(s) 270, 503, 552
DpnII GATC 3 cut(s) 268, 501, 550
EaeI YGGCCR 2 cut(s) 105, 290
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
FaeI CATG 2 cut(s) 411, 562
FaiI YATR 5 cut(s) 163, 198, 323, 409, 560
FaqI GGGAC 1 cut(s) 356
FatI CATG 2 cut(s) 407, 558
Fnu4HI GCNGC 3 cut(s) 219, 450, 465
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 3 cut(s) 219, 450, 465
FspBI CTAG 1 cut(s) 453
GluI GCNGC 3 cut(s) 219, 450, 465
HaeIII GGCC 3 cut(s) 107, 292, 485
HapII CCGG 4 cut(s) 137, 155, 254, 266
HgaI GACGC 1 cut(s) 358
Hin1I GRCGYC 1 cut(s) 369
Hin1II CATG 2 cut(s) 411, 562
HincII GTYRAC 1 cut(s) 393
HindII GTYRAC 1 cut(s) 393
HinfI GANTC 1 cut(s) 524
HpaII CCGG 4 cut(s) 137, 155, 254, 266
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 2 cut(s) 151, 393
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 2 cut(s) 229, 414
Hpy8I GTNNAC 2 cut(s) 151, 393
HpyAV CCTTC 6 cut(s) 52, 291, 356, 381, 414, 475
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4V TGCA 3 cut(s) 18, 238, 544
HpyF10VI GCNNNNNNNGC 2 cut(s) 470, 491
HpyF3I CTNAG 4 cut(s) 113, 302, 468, 507
Hsp92I GRCGYC 1 cut(s) 369
Hsp92II CATG 2 cut(s) 411, 562
Kzo9I GATC 3 cut(s) 268, 501, 550
LguI GCTCTTC 1 cut(s) 374
LpnPI CCDG 9 cut(s) 85, 150, 168, 188, 267, 274, 279, 351, 387
Lsp1109I GCAGC 2 cut(s) 205, 436
MaeI CTAG 1 cut(s) 453
MaeIII GTNAC 1 cut(s) 157
MalI GATC 3 cut(s) 270, 503, 552
MboI GATC 3 cut(s) 268, 501, 550
MboII GAAGA 1 cut(s) 391
MhlI GDGCHC 1 cut(s) 245
MlsI TGGCCA 1 cut(s) 292
MluNI TGGCCA 1 cut(s) 292
MmeI TCCRAC 2 cut(s) 45, 66
MnlI CCTC 4 cut(s) 75, 288, 421, 454
Mox20I TGGCCA 1 cut(s) 292
MscI TGGCCA 1 cut(s) 292
MseI TTAA 1 cut(s) 206
Msp20I TGGCCA 1 cut(s) 292
MspI CCGG 4 cut(s) 137, 155, 254, 266
MspR9I CCNGG 2 cut(s) 155, 254
MwoI GCNNNNNNNGC 2 cut(s) 470, 491
NciI CCSGG 2 cut(s) 155, 254
NdeII GATC 3 cut(s) 268, 501, 550
NlaIII CATG 2 cut(s) 411, 562
NmeAIII GCCGAG 1 cut(s) 133
NmuCI GTSAC 1 cut(s) 157
PciSI GCTCTTC 1 cut(s) 374
PfeI GAWTC 1 cut(s) 524
PinAI ACCGGT 1 cut(s) 136
PkrI GCNGC 3 cut(s) 220, 451, 466
RsaI GTAC 2 cut(s) 5, 152
RsaNI GTAC 2 cut(s) 4, 151
SapI GCTCTTC 1 cut(s) 374
SaqAI TTAA 1 cut(s) 206
SatI GCNGC 3 cut(s) 219, 450, 465
Sau3AI GATC 3 cut(s) 268, 501, 550
ScrFI CCNGG 2 cut(s) 155, 254
SduI GDGCHC 1 cut(s) 245
SetI ASST 9 cut(s) 91, 114, 187, 220, 276, 280, 348, 392, 582
SfcI CTRYAG 3 cut(s) 321, 519, 575
SmlI CTYRAG 2 cut(s) 76, 528
SmoI CTYRAG 2 cut(s) 76, 528
SsiI CCGC 1 cut(s) 464
SspMI CTAG 1 cut(s) 453
StyD4I CCNGG 2 cut(s) 153, 252
TaaI ACNGT 1 cut(s) 50
TaqI TCGA 2 cut(s) 415, 565
TaqII GACCGA 1 cut(s) 433
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 467
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 2 cut(s) 218, 449
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 3 cut(s) 120, 213, 396
XspI CTAG 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.