Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000776

Physical Location & Seq

Genomic Coordinates Reverse (-)

4099918 .. 4102667

Gene Structure 2750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g06811.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTGGGCGTGGCTTGAAGATAAGGTGGGTACCATATATCGAGATTGGAAGGGGGATTTTTCAAGGCACTATAAGAAGTATGGGAGACAAACAATTCCGCTTGATTTGATACACAGGCAAGATGAGTGGGACTGGCTTTGCTGGCATTTTGAGTTGCTTGATTTCAAGGAGGAAATGCAGAAAGAGGCAACTGAATTGAAAAATGCACAGAAGAATGCAAACCCTGACATCCCAGAGGCTGAGCTCCCACCTTTGGAGTGGTCAATGAATCTTAAGGTGCTTGAAGCAGGAGTCGGCAGAAGAGCCGGGAAAGAGATCCATGGTCTTGGAAGAGCAGGTGTCCGACAGTTATCATCTTCCACTCCACGTTCTCGAGTTCATGAGGTGGAGGAGCGATTACATATTGCTGAGGAGAGGGCCGAAAAAGCTGAGGCGGTTGCGCAAAAAGTTAGTGAAGAGATGACATTGGTGAAGCAGCAACTAGCAGCAGTGATGTCTTTTATGGCGCAGCAGACTGGGTGTCCTCCACCAGTCCCTTCCCAACAACCTCTAGAAGAAAATGTTGATGCAGCTGAGAGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transposase_24

Protein Analysis

195

Amino Acids

22.37

Weight (kDa)

5.47

Isoelectric Point (pI)

50.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000776)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15161 FvH4_1g18892 FvH4_1g18893 FvH4_1g20162 FvH4_1g26653 FvH4_1g29050 FvH4_1g29090 FvH4_1g29091 FvH4_2g00890 FvH4_2g00890 FvH4_2g14380 FvH4_2g17540 FvH4_2g19090 FvH4_2g19770 FvH4_2g30343 FvH4_2g30344 FvH4_2g30380 FvH4_2g34010 FvH4_3g18731 FvH4_3g21360 FvH4_3g23880 FvH4_3g26330 FvH4_3g26702 FvH4_3g30710 FvH4_3g30880 FvH4_3g31911 FvH4_3g32572 FvH4_3g38790 FvH4_3g45880 FvH4_4g03280 FvH4_4g08270 FvH4_4g08610 FvH4_4g08911 FvH4_4g10030 FvH4_4g10220 FvH4_4g10221 FvH4_4g10232 FvH4_4g10233 FvH4_4g10364 FvH4_4g14460 FvH4_4g16210 FvH4_4g27150 FvH4_5g06880 FvH4_5g13180 FvH4_5g19450 FvH4_5g20620 FvH4_5g22931 FvH4_5g24202 FvH4_5g24970 FvH4_5g31450 FvH4_5g31660 FvH4_5g32550 FvH4_6g06811 FvH4_6g17172 FvH4_6g17190 FvH4_6g18010 FvH4_6g21800 FvH4_6g21871 FvH4_6g23101 FvH4_6g23360 FvH4_6g24310 FvH4_6g30100 FvH4_6g31520 FvH4_6g31530 FvH4_6g34820 FvH4_6g35510 FvH4_6g40350 FvH4_6g40360 FvH4_7g09590 FvH4_7g16000

Species

Orthologous Gene IDs

fragaria_vesca

FvH4_1g15161 FvH4_1g18892 FvH4_1g18893 FvH4_1g20162 FvH4_1g26653 FvH4_1g29050 FvH4_1g29090 FvH4_1g29091 FvH4_2g00890 FvH4_2g00890 FvH4_2g14380 FvH4_2g17540 FvH4_2g19090 FvH4_2g19770 FvH4_2g30343 FvH4_2g30344 FvH4_2g30380 FvH4_2g34010 FvH4_3g18731 FvH4_3g21360 FvH4_3g23880 FvH4_3g26330 FvH4_3g26702 FvH4_3g30710 FvH4_3g30880 FvH4_3g31911 FvH4_3g32572 FvH4_3g38790 FvH4_3g45880 FvH4_4g03280 FvH4_4g08270 FvH4_4g08610 FvH4_4g08911 FvH4_4g10030 FvH4_4g10220 FvH4_4g10221 FvH4_4g10232 FvH4_4g10233 FvH4_4g10364 FvH4_4g14460 FvH4_4g16210 FvH4_4g27150 FvH4_5g06880 FvH4_5g13180 FvH4_5g19450 FvH4_5g20620 FvH4_5g22931 FvH4_5g24202 FvH4_5g24970 FvH4_5g31450 FvH4_5g31660 FvH4_5g32550 FvH4_6g06811 FvH4_6g17172 FvH4_6g17190 FvH4_6g18010 FvH4_6g21800 FvH4_6g21871 FvH4_6g23101 FvH4_6g23360 FvH4_6g24310 FvH4_6g30100 FvH4_6g31520 FvH4_6g31530 FvH4_6g34820 FvH4_6g35510 FvH4_6g40350 FvH4_6g40360 FvH4_7g09590 FvH4_7g16000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	326
Acc16I	TGCGCA	1 cut(s)	441
Acc36I	ACCTGC	1 cut(s)	326
Acc65I	GGTACC	1 cut(s)	29
AccB1I	GGYRCC	1 cut(s)	29
AciI	CCGC	2 cut(s)	98, 434
AclWI	GGATC	1 cut(s)	310
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	253
AflII	CTTAAG	1 cut(s)	272
AgsI	TTSAA	5 cut(s)	17, 63, 166, 199, 284
AhdI	GACNNNNNGTC	1 cut(s)	519
AluBI	AGCT	3 cut(s)	244, 428, 572
AluI	AGCT	3 cut(s)	244, 428, 572
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	79
AlwI	GGATC	1 cut(s)	310
AlwNI	CAGNNNCTG	1 cut(s)	239
Ama87I	CYCGRG	1 cut(s)	372
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	4 cut(s)	475, 485, 508, 569
Asp718I	GGTACC	1 cut(s)	29
AspLEI	GCGC	2 cut(s)	442, 508
AspS9I	GGNCC	1 cut(s)	417
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	481
AvaI	CYCGRG	1 cut(s)	372
BanI	GGYRCC	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	246
BbvCI	CCTCAGC	2 cut(s)	408, 429
BbvI	GCAGC	4 cut(s)	487, 497, 520, 581
BcnI	CCSGG	1 cut(s)	307
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	3 cut(s)	482, 551, 583
BfrI	CTTAAG	1 cut(s)	272
BfuAI	ACCTGC	1 cut(s)	326
BisI	GCNGC	4 cut(s)	476, 486, 509, 570
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	4 cut(s)	477, 487, 510, 571
Bme1390I	CCNGG	1 cut(s)	307
BmeRI	GACNNNNNGTC	1 cut(s)	519
BmeT110I	CYCGRG	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	417
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	307
BmrI	ACTGGG	1 cut(s)	525
BmsI	GCATC	1 cut(s)	556
BmuI	ACTGGG	1 cut(s)	525
Bpu10I	CCTNAGC	2 cut(s)	408, 429
Bpu1102I	GCTNAGC	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse1I	ACTGG	3 cut(s)	137, 520, 530
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMII	CTCAG	4 cut(s)	231, 399, 420, 564
BseNI	ACTGG	3 cut(s)	137, 520, 530
BseRI	GAGGAG	2 cut(s)	404, 425
BseXI	GCAGC	4 cut(s)	487, 497, 520, 581
BshFI	GGCC	1 cut(s)	419
BshNI	GGYRCC	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	306
BslFI	GGGAC	2 cut(s)	143, 518
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	79
BsmFI	GGGAC	2 cut(s)	143, 518
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	419
BsoBI	CYCGRG	1 cut(s)	372
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	315
Bsp1720I	GCTNAGC	1 cut(s)	240
Bsp19I	CCATGG	1 cut(s)	319
BspACI	CCGC	2 cut(s)	98, 434
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	4 cut(s)	232, 400, 421, 565
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	31
BspMI	ACCTGC	1 cut(s)	326
BspPI	GGATC	1 cut(s)	310
BspQI	GCTCTTC	2 cut(s)	295, 325
BspT107I	GGYRCC	1 cut(s)	29
BspTI	CTTAAG	1 cut(s)	272
BsrI	ACTGG	3 cut(s)	137, 520, 530
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	319
Bst4CI	ACNGT	1 cut(s)	348
Bst6I	CTCTTC	3 cut(s)	295, 325, 450
BstAFI	CTTAAG	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	4 cut(s)	240, 408, 429, 573
BstDSI	CCRYGG	1 cut(s)	319
BstF5I	GGATG	1 cut(s)	228
BstHHI	GCGC	2 cut(s)	442, 508
BstKTI	GATC	1 cut(s)	318
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	315
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 425
BstSCI	CCNGG	1 cut(s)	305
BstV1I	GCAGC	4 cut(s)	487, 497, 520, 581
BstX2I	RGATCY	1 cut(s)	315
BstXI	CCANNNNNNTGG	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	419
BtgI	CCRYGG	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	228
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	1 cut(s)	495
BveI	ACCTGC	1 cut(s)	326
Cac8I	GCNNGC	1 cut(s)	143
CaiI	CAGNNNCTG	1 cut(s)	239
CciI	TCATGA	1 cut(s)	379
CfoI	GCGC	2 cut(s)	442, 508
Cfr13I	GGNCC	1 cut(s)	417
Csp6I	GTAC	1 cut(s)	30
CspCI	CAANNNNNGTGG	2 cut(s)	107, 142
CviAII	CATG	2 cut(s)	320, 380
CviJI	RGCY	8 cut(s)	13, 136, 239, 244, 305, 419, 428, 572
CviKI_1	RGCY	8 cut(s)	13, 136, 239, 244, 305, 419, 428, 572
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	4 cut(s)	240, 408, 429, 573
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
DriI	GACNNNNNGTC	1 cut(s)	519
Eam1104I	CTCTTC	3 cut(s)	295, 325, 450
Eam1105I	GACNNNNNGTC	1 cut(s)	519
EarI	CTCTTC	3 cut(s)	295, 325, 450
Ecl136II	GAGCTC	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	246
Eco53kI	GAGCTC	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	372
EcoICRI	GAGCTC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	2 cut(s)	323, 383
FaiI	YATR	8 cut(s)	35, 37, 72, 81, 321, 381, 402, 503
FaqI	GGGAC	2 cut(s)	143, 518
FatI	CATG	2 cut(s)	319, 379
Fnu4HI	GCNGC	4 cut(s)	476, 486, 509, 570
FokI	GGATG	1 cut(s)	215
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	4 cut(s)	476, 486, 509, 570
FspBI	CTAG	3 cut(s)	482, 551, 583
FspI	TGCGCA	1 cut(s)	441
GlaI	GCGC	2 cut(s)	441, 507
GluI	GCNGC	4 cut(s)	476, 486, 509, 570
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	1 cut(s)	306
HhaI	GCGC	2 cut(s)	442, 508
Hin1II	CATG	2 cut(s)	323, 383
Hin6I	GCGC	2 cut(s)	440, 506
HinP1I	GCGC	2 cut(s)	440, 506
HinfI	GANTC	2 cut(s)	268, 291
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	1 cut(s)	481
Hpy188I	TCNGA	1 cut(s)	344
Hpy188III	TCNNGA	4 cut(s)	41, 372, 380, 551
HpyAV	CCTTC	2 cut(s)	43, 546
HpyCH4III	ACNGT	1 cut(s)	348
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	4 cut(s)	178, 206, 218, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 425
HpyF3I	CTNAG	4 cut(s)	240, 408, 429, 573
HpySE526I	ACGT	1 cut(s)	367
Hsp92II	CATG	2 cut(s)	323, 383
HspAI	GCGC	2 cut(s)	440, 506
KpnI	GGTACC	1 cut(s)	33
Kzo9I	GATC	1 cut(s)	315
LguI	GCTCTTC	2 cut(s)	295, 325
LmnI	GCTCC	2 cut(s)	249, 391
Lsp1109I	GCAGC	4 cut(s)	487, 497, 520, 581
LweI	GCATC	1 cut(s)	556
MaeI	CTAG	3 cut(s)	482, 551, 583
MaeII	ACGT	1 cut(s)	367
MalI	GATC	1 cut(s)	317
MboI	GATC	1 cut(s)	315
MboII	GAAGA	7 cut(s)	29, 223, 312, 342, 348, 467, 566
MflI	RGATCY	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	2 cut(s)	93, 194
MlyI	GAGTC	1 cut(s)	300
MmeI	TCCRAC	1 cut(s)	367
MseI	TTAA	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	572
MspCI	CTTAAG	1 cut(s)	272
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	1 cut(s)	307
Mva1269I	GAATGC	1 cut(s)	220
MwoI	GCNNNNNNNGC	2 cut(s)	142, 425
NciI	CCSGG	1 cut(s)	307
NcoI	CCATGG	1 cut(s)	319
NdeII	GATC	1 cut(s)	315
NlaIII	CATG	2 cut(s)	323, 383
NlaIV	GGNNCC	1 cut(s)	31
NsbI	TGCGCA	1 cut(s)	441
PaeR7I	CTCGAG	1 cut(s)	372
PagI	TCATGA	1 cut(s)	379
PaqCI	CACCTGC	1 cut(s)	326
PciSI	GCTCTTC	2 cut(s)	295, 325
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	268
PkrI	GCNGC	4 cut(s)	477, 487, 510, 571
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
Psp124BI	GAGCTC	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	417
PstNI	CAGNNNCTG	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	315
PvuII	CAGCTG	1 cut(s)	572
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
SacI	GAGCTC	1 cut(s)	246
SapI	GCTCTTC	2 cut(s)	295, 325
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	4 cut(s)	476, 486, 509, 570
Sau3AI	GATC	1 cut(s)	315
Sau96I	GGNCC	1 cut(s)	417
SchI	GAGTC	1 cut(s)	300
ScrFI	CCNGG	1 cut(s)	307
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	1 cut(s)	556
Sfr274I	CTCGAG	1 cut(s)	372
SlaI	CTCGAG	1 cut(s)	372
SmlI	CTYRAG	2 cut(s)	272, 372
SmoI	CTYRAG	2 cut(s)	272, 372
Sse9I	AATT	2 cut(s)	93, 194
SsiI	CCGC	2 cut(s)	98, 434
SspMI	CTAG	3 cut(s)	482, 551, 583
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	305
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	348
TaiI	ACGT	1 cut(s)	370
TaqI	TCGA	2 cut(s)	40, 373
TasI	AATT	2 cut(s)	93, 194
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	495
TseI	GCWGC	4 cut(s)	475, 485, 508, 569
TspDTI	ATGAA	2 cut(s)	281, 368
TspRI	CASTG	1 cut(s)	495
Vha464I	CTTAAG	1 cut(s)	272
XbaI	TCTAGA	1 cut(s)	550
XcmI	CCANNNNNNNNNTGG	1 cut(s)	255
XhoI	CTCGAG	1 cut(s)	372
XspI	CTAG	3 cut(s)	482, 551, 583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.