FvH4_6g31530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000776
Physical Location & Seq
Forward (+)
24655288 .. 24657786
2499 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31530.t1

Sequence Viewer

Length: 336 bp
ATGAGTGGGACTGGCTTTGCTGGCACTTTGAGTCGGCTGATTTCAAGGGTGGTCCACCACAAAGAGAAGGGTGAGGAATTTCCTGTTATCCCAGCTTACACGGAGACGTATGACACAGTCAACGATCCTAAAGCTACCAAGAATCTTAAAGAGGCCACTGAATTGAAAAATACACAGAAGAATGCAAACCCTGACATCCCGGAGGCTGAGCTCCCACCTTTGGAGTGGTCAATGAATCTTAAGGATTCCTGTCTTGATCAAGATTCCATCTTTCCTCGAAGCCTAGTCCATGAAGGAGAGATCCAAACCAAGTCCAATATGGAGAAGAAGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.47

Weight (kDa)

5.36

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 119, 295
AcsI RAATTY 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 220
AflII CTTAAG 1 cut(s) 239
AgsI TTSAA 2 cut(s) 45, 166
AluBI AGCT 3 cut(s) 95, 134, 211
AluI AGCT 3 cut(s) 95, 134, 211
Alw21I GWGCWC 1 cut(s) 213
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 2 cut(s) 119, 295
AoxI GGCC 1 cut(s) 153
ApoI RAATTY 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 52
AsuC2I CCSGG 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 83
AvaII GGWCC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 213
BccI CCATC 1 cut(s) 275
BclI TGATCA 1 cut(s) 256
BcnI CCSGG 1 cut(s) 200
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 1 cut(s) 284
BfrI CTTAAG 1 cut(s) 239
BglII AGATCT 1 cut(s) 330
BlpI GCTNAGC 1 cut(s) 207
Bme1390I CCNGG 1 cut(s) 200
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 200
Bpu1102I GCTNAGC 1 cut(s) 207
BpuMI CCSGG 1 cut(s) 200
Bsc4I CCNNNNNNNGG 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 16
BseGI GGATG 1 cut(s) 195
BseLI CCNNNNNNNGG 1 cut(s) 220
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 16
BseYI CCCAGC 1 cut(s) 91
BshFI GGCC 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 213
BsiSI CCGG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 98
BsmBI CGTCTC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 22
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 4 cut(s) 124, 256, 300, 330
Bsp1720I GCTNAGC 1 cut(s) 207
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 1 cut(s) 199
BspPI GGATC 2 cut(s) 119, 295
BspTI CTTAAG 1 cut(s) 239
BsrI ACTGG 1 cut(s) 16
BssMI GATC 4 cut(s) 124, 256, 300, 330
Bst4CI ACNGT 1 cut(s) 118
BstAFI CTTAAG 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 1 cut(s) 207
BstF5I GGATG 1 cut(s) 195
BstKTI GATC 4 cut(s) 127, 259, 303, 333
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 4 cut(s) 124, 256, 300, 330
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 198
BstX2I RGATCY 2 cut(s) 300, 330
BstYI RGATCY 2 cut(s) 300, 330
BsuRI GGCC 1 cut(s) 155
BtsCI GGATG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 52
CviAII CATG 1 cut(s) 290
CviJI RGCY 8 cut(s) 15, 37, 95, 134, 155, 206, 211, 282
CviKI_1 RGCY 8 cut(s) 15, 37, 95, 134, 155, 206, 211, 282
DdeI CTNAG 1 cut(s) 207
DpnI GATC 4 cut(s) 126, 258, 302, 332
DpnII GATC 4 cut(s) 124, 256, 300, 330
Ecl136II GAGCTC 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 213
Eco47I GGWCC 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 211
EcoICRI GAGCTC 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 213
Esp3I CGTCTC 1 cut(s) 98
FaeI CATG 1 cut(s) 293
FaiI YATR 3 cut(s) 111, 291, 320
FaqI GGGAC 1 cut(s) 22
FatI CATG 1 cut(s) 289
FbaI TGATCA 1 cut(s) 256
FokI GGATG 1 cut(s) 182
FriOI GRGCYC 1 cut(s) 213
FspBI CTAG 1 cut(s) 284
GsaI CCCAGC 1 cut(s) 95
HaeIII GGCC 1 cut(s) 155
HapII CCGG 1 cut(s) 200
Hin1II CATG 1 cut(s) 293
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 5 cut(s) 31, 142, 235, 245, 263
HpaII CCGG 1 cut(s) 200
HphI GGTGA 1 cut(s) 83
Hpy166II GTNNAC 2 cut(s) 55, 121
Hpy188III TCNNGA 2 cut(s) 254, 260
Hpy8I GTNNAC 2 cut(s) 55, 121
HpyAV CCTTC 2 cut(s) 61, 287
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 107
Hsp92II CATG 1 cut(s) 293
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 4 cut(s) 124, 256, 300, 330
LmnI GCTCC 1 cut(s) 216
LpnPI CCDG 6 cut(s) 6, 96, 105, 204, 213, 262
MaeI CTAG 1 cut(s) 284
MaeII ACGT 1 cut(s) 107
MalI GATC 4 cut(s) 126, 258, 302, 332
MboI GATC 4 cut(s) 124, 256, 300, 330
MboII GAAGA 1 cut(s) 190
MflI RGATCY 2 cut(s) 300, 330
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 2 cut(s) 77, 161
MlyI GAGTC 1 cut(s) 40
MnlI CCTC 4 cut(s) 67, 145, 196, 285
MseI TTAA 2 cut(s) 147, 240
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 200
Mva1269I GAATGC 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 21
NciI CCSGG 1 cut(s) 200
NdeII GATC 4 cut(s) 124, 256, 300, 330
NlaIII CATG 1 cut(s) 293
PctI GAATGC 1 cut(s) 187
PfeI GAWTC 4 cut(s) 142, 235, 245, 263
PflFI GACNNNGTC 1 cut(s) 116
PfoI TCCNGGA 1 cut(s) 198
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
Psp124BI GAGCTC 1 cut(s) 213
PspFI CCCAGC 1 cut(s) 91
PspPI GGNCC 1 cut(s) 52
PsuI RGATCY 2 cut(s) 300, 330
PsyI GACNNNGTC 1 cut(s) 116
SacI GAGCTC 1 cut(s) 213
SaqAI TTAA 2 cut(s) 147, 240
Sau3AI GATC 4 cut(s) 124, 256, 300, 330
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 1 cut(s) 213
SetI ASST 5 cut(s) 97, 110, 136, 213, 220
SinI GGWCC 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 2 cut(s) 77, 161
SspMI CTAG 1 cut(s) 284
SstI GAGCTC 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 198
TaaI ACNGT 1 cut(s) 118
TaiI ACGT 1 cut(s) 110
TaqI TCGA 1 cut(s) 277
TasI AATT 2 cut(s) 77, 161
TfiI GAWTC 4 cut(s) 142, 235, 245, 263
Tru1I TTAA 2 cut(s) 147, 240
Tru9I TTAA 2 cut(s) 147, 240
TscAI CASTG 1 cut(s) 163
TspDTI ATGAA 2 cut(s) 248, 306
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 1 cut(s) 163
Tth111I GACNNNGTC 1 cut(s) 116
Vha464I CTTAAG 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 1 cut(s) 77
XcmI CCANNNNNNNNNTGG 2 cut(s) 222, 316
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.