FvH4_6g35510

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000776
Physical Location & Seq
Forward (+)
28012411 .. 28016627
4217 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35510.t1

Sequence Viewer

Length: 858 bp
ATGAAGAAGGAATCGTGGTATGATTTAGACAAGGAGGAGAGGAAGAAGCTTTTTGACGGTCTCACTCATGACTTGTCCGAGATTCACAAGCTCGGGGGGAGAGACGTGATTCCGGAAGAGCTTTTGCATAGGCGAGATGAGTGGGAGTGGCTTTGCACGCATTTTGAATCGGACAAGTACAAGAGACGATCGGTTGCCAACTCCAGCAACCGTGGTAAGAAGGAGTTAGAGCACCACTCAGGGAGGAAACCTATCATTTACCGGGTGGCCAAGCTAAGGGATAAGGGTGCTTCATTACCGATGGTTGACGTGTACCTGATGACATACGACATCAACCAGCCTAAAGCTGCTGAGCATTATGAAAACTTGAAGGAACAGGGTGCTATTGCCAAGACTTTGCAGAGCACTCAACACCCGAACATCCCACCGGATCAGCTGCCTCCTTTGGACTGGCCAACTCAACTAAGTGTTGTGCAAAACGCTATGGGAGAAACAAAGGGGTCTTACCTTCGTGGTATTGGAAGAGCATGCGTCCTAGAGAAGAGCAGAAGGTCAACATCTTCCTCTTCATGCTCTCGACTGAATAATGAGGCGATGGCAGAGATAGTGGCTGTTAGAAAGGAGGCGGCTGAGGCACAAGAGAGGGCTGACAAAGCACAAGAGAGGGCTGAAAAAACCCAGAAGATCGCTGAACAGTCTATTGCAGATTATCAAGTGTTGAAGTTGCACATGGATCAAATCATGGCTCGAATAGGGCTACAGCCTATGTGTTCACCCTGGGTCCCAAGCCAACAACCTCGAGACGACGGTGATGATAAGGGCCTTGACACTTCTCAGATTAGTTTAGGAAATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

286

Amino Acids

32.5

Weight (kDa)

7.13

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 46 - 131 6.5e-06 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 112
AciI CCGC 1 cut(s) 626
AclWI GGATC 2 cut(s) 438, 741
AcoI YGGCCR 2 cut(s) 267, 452
AfaI GTAC 2 cut(s) 179, 314
AfiI CCNNNNNNNGG 1 cut(s) 276
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 3 cut(s) 167, 370, 721
AjiI CACGTC 2 cut(s) 106, 310
AjnI CCWGG 1 cut(s) 776
AluBI AGCT 6 cut(s) 49, 91, 121, 274, 347, 436
AluI AGCT 6 cut(s) 49, 91, 121, 274, 347, 436
Alw21I GWGCWC 2 cut(s) 234, 407
Alw26I GTCTC 4 cut(s) 65, 96, 178, 795
AlwI GGATC 2 cut(s) 438, 741
Ama87I CYCGRG 2 cut(s) 92, 798
Aor13HI TCCGGA 1 cut(s) 112
AoxI GGCC 3 cut(s) 267, 452, 820
ApeKI GCWGC 2 cut(s) 347, 436
AspS9I GGNCC 2 cut(s) 781, 820
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 2 cut(s) 765, 821
AvaI CYCGRG 2 cut(s) 92, 798
AvaII GGWCC 1 cut(s) 781
BalI TGGCCA 2 cut(s) 269, 454
Bbv12I GWGCWC 2 cut(s) 234, 407
BbvCI CCTCAGC 1 cut(s) 630
BbvI GCAGC 2 cut(s) 334, 423
BccI CCATC 2 cut(s) 295, 589
BciT130I CCWGG 1 cut(s) 778
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 4 cut(s) 65, 96, 178, 795
BfaI CTAG 1 cut(s) 536
BfmI CTRYAG 1 cut(s) 758
BisI GCNGC 3 cut(s) 348, 437, 627
BlpI GCTNAGC 1 cut(s) 351
BlsI GCNGC 3 cut(s) 349, 438, 628
Bme1390I CCNGG 2 cut(s) 263, 778
Bme18I GGWCC 1 cut(s) 781
BmeT110I CYCGRG 2 cut(s) 92, 798
BmgBI CACGTC 2 cut(s) 106, 310
BmgT120I GGNCC 2 cut(s) 781, 820
BmiI GGNNCC 2 cut(s) 782, 783
BmrFI CCNGG 2 cut(s) 263, 778
BplI GAGNNNNNCTC 2 cut(s) 221, 253
BpmI CTGGAG 1 cut(s) 187
Bpu10I CCTNAGC 2 cut(s) 275, 630
Bpu1102I GCTNAGC 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 263
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 3 cut(s) 211, 776, 777
BsaWI WCCGGW 2 cut(s) 112, 427
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse1I ACTGG 1 cut(s) 455
BseAI TCCGGA 1 cut(s) 112
BseBI CCWGG 1 cut(s) 778
BseDI CCNNGG 3 cut(s) 211, 776, 777
BseGI GGATG 1 cut(s) 420
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMII CTCAG 4 cut(s) 252, 342, 621, 848
BseNI ACTGG 1 cut(s) 455
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 2 cut(s) 334, 423
Bsh1285I CGRYCG 1 cut(s) 191
BshFI GGCC 3 cut(s) 269, 454, 822
BsiEI CGRYCG 1 cut(s) 191
BsiHKAI GWGCWC 2 cut(s) 234, 407
BsiHKCI CYCGRG 2 cut(s) 92, 798
BsiSI CCGG 3 cut(s) 113, 262, 428
BslFI GGGAC 1 cut(s) 767
BslI CCNNNNNNNGG 1 cut(s) 276
BsmAI GTCTC 4 cut(s) 65, 96, 178, 795
BsmBI CGTCTC 3 cut(s) 96, 178, 795
BsmFI GGGAC 1 cut(s) 767
BsnI GGCC 3 cut(s) 269, 454, 822
Bso31I GGTCTC 1 cut(s) 65
BsoBI CYCGRG 2 cut(s) 92, 798
Bsp1286I GDGCHC 2 cut(s) 234, 407
Bsp13I TCCGGA 1 cut(s) 112
Bsp143I GATC 4 cut(s) 188, 430, 684, 733
Bsp1720I GCTNAGC 1 cut(s) 351
BspACI CCGC 1 cut(s) 626
BspANI GGCC 3 cut(s) 269, 454, 822
BspCNI CTCAG 4 cut(s) 251, 343, 622, 847
BspEI TCCGGA 1 cut(s) 112
BspHI TCATGA 1 cut(s) 67
BspLI GGNNCC 2 cut(s) 782, 783
BspPI GGATC 2 cut(s) 438, 741
BspQI GCTCTTC 3 cut(s) 111, 517, 536
BspTNI GGTCTC 1 cut(s) 65
BsrI ACTGG 1 cut(s) 455
BssECI CCNNGG 3 cut(s) 211, 776, 777
BssMI GATC 4 cut(s) 188, 430, 684, 733
Bst2UI CCWGG 1 cut(s) 778
Bst4CI ACNGT 4 cut(s) 59, 212, 696, 809
Bst6I CTCTTC 4 cut(s) 111, 517, 536, 571
BstC8I GCNNGC 2 cut(s) 158, 529
BstDEI CTNAG 6 cut(s) 238, 275, 351, 464, 630, 834
BstDSI CCRYGG 1 cut(s) 211
BstF5I GGATG 1 cut(s) 420
BstKTI GATC 4 cut(s) 191, 433, 687, 736
BstMAI GTCTC 4 cut(s) 65, 96, 178, 795
BstMBI GATC 4 cut(s) 188, 430, 684, 733
BstMCI CGRYCG 1 cut(s) 191
BstMWI GCNNNNNNNGC 3 cut(s) 157, 632, 653
BstNI CCWGG 1 cut(s) 778
BstNSI RCATGY 1 cut(s) 531
BstSCI CCNGG 2 cut(s) 261, 776
BstSFI CTRYAG 1 cut(s) 758
BstV1I GCAGC 2 cut(s) 334, 423
BsuRI GGCC 3 cut(s) 269, 454, 822
BtgI CCRYGG 1 cut(s) 211
BtgZI GCGATG 1 cut(s) 608
BtrI CACGTC 2 cut(s) 106, 310
BtsCI GGATG 1 cut(s) 420
Cac8I GCNNGC 2 cut(s) 158, 529
CciI TCATGA 1 cut(s) 67
Cfr13I GGNCC 2 cut(s) 781, 820
CseI GACGC 1 cut(s) 520
Csp6I GTAC 2 cut(s) 178, 313
CviAII CATG 5 cut(s) 68, 528, 570, 730, 742
CviQI GTAC 2 cut(s) 178, 313
DdeI CTNAG 6 cut(s) 238, 275, 351, 464, 630, 834
DpnI GATC 4 cut(s) 190, 432, 686, 735
DpnII GATC 4 cut(s) 188, 430, 684, 733
EaeI YGGCCR 2 cut(s) 267, 452
Eam1104I CTCTTC 4 cut(s) 111, 517, 536, 571
EarI CTCTTC 4 cut(s) 111, 517, 536, 571
Eco31I GGTCTC 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 781
Eco88I CYCGRG 2 cut(s) 92, 798
EcoO109I RGGNCCY 2 cut(s) 781, 820
EcoRII CCWGG 1 cut(s) 776
Esp3I CGTCTC 3 cut(s) 96, 178, 795
FaeI CATG 5 cut(s) 71, 531, 573, 733, 745
FaqI GGGAC 1 cut(s) 767
FatI CATG 5 cut(s) 67, 527, 569, 729, 741
Fnu4HI GCNGC 3 cut(s) 348, 437, 627
FokI GGATG 1 cut(s) 407
Fsp4HI GCNGC 3 cut(s) 348, 437, 627
FspBI CTAG 1 cut(s) 536
GluI GCNGC 3 cut(s) 348, 437, 627
GsuI CTGGAG 1 cut(s) 187
HaeIII GGCC 3 cut(s) 269, 454, 822
HapII CCGG 3 cut(s) 113, 262, 428
HgaI GACGC 1 cut(s) 520
Hin1II CATG 5 cut(s) 71, 531, 573, 733, 745
HincII GTYRAC 2 cut(s) 307, 555
HindII GTYRAC 2 cut(s) 307, 555
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 4 cut(s) 11, 82, 109, 167
HpaII CCGG 3 cut(s) 113, 262, 428
HphI GGTGA 2 cut(s) 765, 821
Hpy166II GTNNAC 4 cut(s) 307, 313, 555, 773
Hpy188I TCNGA 3 cut(s) 79, 172, 837
Hpy188III TCNNGA 4 cut(s) 68, 113, 576, 800
Hpy8I GTNNAC 4 cut(s) 307, 313, 555, 773
Hpy99I CGWCG 1 cut(s) 809
HpyAV CCTTC 4 cut(s) 214, 364, 518, 543
HpyCH4III ACNGT 4 cut(s) 59, 212, 696, 809
HpyCH4IV ACGT 2 cut(s) 105, 309
HpyCH4V TGCA 6 cut(s) 127, 156, 400, 475, 704, 727
HpyF10VI GCNNNNNNNGC 3 cut(s) 157, 632, 653
HpyF3I CTNAG 6 cut(s) 238, 275, 351, 464, 630, 834
HpySE526I ACGT 2 cut(s) 105, 309
Hsp92II CATG 5 cut(s) 71, 531, 573, 733, 745
KflI GGGWCCC 1 cut(s) 781
Kpn2I TCCGGA 1 cut(s) 112
Kzo9I GATC 4 cut(s) 188, 430, 684, 733
LguI GCTCTTC 3 cut(s) 111, 517, 536
Lsp1109I GCAGC 2 cut(s) 334, 423
MaeI CTAG 1 cut(s) 536
MaeII ACGT 2 cut(s) 105, 309
MalI GATC 4 cut(s) 190, 432, 686, 735
MboI GATC 4 cut(s) 188, 430, 684, 733
MboII GAAGA 8 cut(s) 16, 55, 128, 534, 552, 553, 558, 694
MhlI GDGCHC 2 cut(s) 234, 407
MlsI TGGCCA 2 cut(s) 269, 454
MluNI TGGCCA 2 cut(s) 269, 454
Mox20I TGGCCA 2 cut(s) 269, 454
MroI TCCGGA 1 cut(s) 112
MscI TGGCCA 2 cut(s) 269, 454
Msp20I TGGCCA 2 cut(s) 269, 454
MspA1I CMGCKG 1 cut(s) 436
MspI CCGG 3 cut(s) 113, 262, 428
MspR9I CCNGG 2 cut(s) 263, 778
MvaI CCWGG 1 cut(s) 778
MwoI GCNNNNNNNGC 3 cut(s) 157, 632, 653
NciI CCSGG 1 cut(s) 263
NdeII GATC 4 cut(s) 188, 430, 684, 733
NlaIII CATG 5 cut(s) 71, 531, 573, 733, 745
NlaIV GGNNCC 2 cut(s) 782, 783
NspI RCATGY 1 cut(s) 531
PaeI GCATGC 1 cut(s) 531
PaeR7I CTCGAG 1 cut(s) 798
PagI TCATGA 1 cut(s) 67
PasI CCCWGGG 1 cut(s) 777
PciSI GCTCTTC 3 cut(s) 111, 517, 536
PfeI GAWTC 4 cut(s) 11, 82, 109, 167
PkrI GCNGC 3 cut(s) 349, 438, 628
Ple19I CGATCG 1 cut(s) 191
PpuMI RGGWCCY 1 cut(s) 781
Psp5II RGGWCCY 1 cut(s) 781
Psp6I CCWGG 1 cut(s) 776
PspGI CCWGG 1 cut(s) 776
PspN4I GGNNCC 2 cut(s) 782, 783
PspPI GGNCC 2 cut(s) 781, 820
PspPPI RGGWCCY 1 cut(s) 781
PvuI CGATCG 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 436
RsaI GTAC 2 cut(s) 179, 314
RsaNI GTAC 2 cut(s) 178, 313
SapI GCTCTTC 3 cut(s) 111, 517, 536
SatI GCNGC 3 cut(s) 348, 437, 627
Sau3AI GATC 4 cut(s) 188, 430, 684, 733
Sau96I GGNCC 2 cut(s) 781, 820
ScrFI CCNGG 2 cut(s) 263, 778
SduI GDGCHC 2 cut(s) 234, 407
SfcI CTRYAG 1 cut(s) 758
Sfr274I CTCGAG 1 cut(s) 798
SinI GGWCC 1 cut(s) 781
SlaI CTCGAG 1 cut(s) 798
SmlI CTYRAG 1 cut(s) 798
SmoI CTYRAG 1 cut(s) 798
SphI GCATGC 1 cut(s) 531
SsiI CCGC 1 cut(s) 626
SspMI CTAG 1 cut(s) 536
StyD4I CCNGG 2 cut(s) 261, 776
TaaI ACNGT 4 cut(s) 59, 212, 696, 809
TaiI ACGT 2 cut(s) 108, 312
TaqI TCGA 3 cut(s) 577, 748, 799
TatI WGTACW 1 cut(s) 177
TauI GCSGC 1 cut(s) 629
TfiI GAWTC 4 cut(s) 11, 82, 109, 167
TseI GCWGC 2 cut(s) 347, 436
TspDTI ATGAA 4 cut(s) 17, 282, 375, 558
VpaK11BI GGWCC 1 cut(s) 781
XceI RCATGY 1 cut(s) 531
XhoI CTCGAG 1 cut(s) 798
XspI CTAG 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.