FvH4_3g18731

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000776
Physical Location & Seq
Reverse (-)
11996959 .. 11997213
255 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18731.t1

Sequence Viewer

Length: 255 bp
ATGGAGAAGGTTGATGAGATCCGTGACAATGTGAGGAAGGAATACCCTGGCATTCCGAAAGAAGATATTGATCTTCATTTTGACCAACAAACTCAAGCGATCTTGTTTGAAAAAGCATTTGGACATAGAAACATGAACGAGATCCGGGGAATGGGACTAGTAGGCAGTTATGGTTTGAGTCAAGGCCCCGATAGGAGCTGCACTTCACGTTCCCAACGAGCTGCACTTGTTGATATTGCTGTGGAGGAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.48

Weight (kDa)

5.06

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 13, 136
AfiI CCNNNNNNNGG 1 cut(s) 151
AgsI TTSAA 1 cut(s) 110
AhlI ACTAGT 1 cut(s) 157
AjnI CCWGG 1 cut(s) 46
AjuI GAANNNNNNNTTGG 2 cut(s) 102, 134
AluBI AGCT 2 cut(s) 198, 221
AluI AGCT 2 cut(s) 198, 221
AlwI GGATC 2 cut(s) 13, 136
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 2 cut(s) 198, 221
AspS9I GGNCC 1 cut(s) 185
AsuC2I CCSGG 1 cut(s) 146
BbvI GCAGC 2 cut(s) 185, 208
BciT130I CCWGG 1 cut(s) 48
BcnI CCSGG 1 cut(s) 146
BcuI ACTAGT 1 cut(s) 157
BfaI CTAG 1 cut(s) 158
BisI GCNGC 2 cut(s) 199, 222
BlsI GCNGC 2 cut(s) 200, 223
Bme1390I CCNGG 2 cut(s) 48, 146
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 2 cut(s) 48, 146
BpuEI CTTGAG 1 cut(s) 78
BpuMI CCSGG 1 cut(s) 146
BsaBI GATNNNNATC 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 46, 145
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse8I GATNNNNATC 1 cut(s) 69
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 2 cut(s) 46, 145
BseJI GATNNNNATC 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 151
BseXI GCAGC 2 cut(s) 185, 208
BsgI GTGCAG 2 cut(s) 184, 207
BshFI GGCC 1 cut(s) 186
BsiSI CCGG 1 cut(s) 145
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 168
BsmI GAATGC 1 cut(s) 51
BsnI GGCC 1 cut(s) 186
Bsp143I GATC 4 cut(s) 18, 70, 99, 141
BspANI GGCC 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 187
BspPI GGATC 2 cut(s) 13, 136
BssECI CCNNGG 2 cut(s) 46, 145
BssMI GATC 4 cut(s) 18, 70, 99, 141
Bst2UI CCWGG 1 cut(s) 48
BstKTI GATC 4 cut(s) 21, 73, 102, 144
BstMBI GATC 4 cut(s) 18, 70, 99, 141
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 2 cut(s) 46, 144
BstV1I GCAGC 2 cut(s) 185, 208
BstX2I RGATCY 2 cut(s) 18, 141
BstYI RGATCY 2 cut(s) 18, 141
BsuRI GGCC 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 185
CviAII CATG 1 cut(s) 133
CviJI RGCY 4 cut(s) 186, 198, 221, 251
CviKI_1 RGCY 4 cut(s) 186, 198, 221, 251
DpnI GATC 4 cut(s) 20, 72, 101, 143
DpnII GATC 4 cut(s) 18, 70, 99, 141
EcoO109I RGGNCCY 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 46
FaeI CATG 1 cut(s) 136
FaiI YATR 3 cut(s) 126, 134, 171
FaqI GGGAC 1 cut(s) 168
FatI CATG 1 cut(s) 132
Fnu4HI GCNGC 2 cut(s) 199, 222
Fsp4HI GCNGC 2 cut(s) 199, 222
FspBI CTAG 1 cut(s) 158
GluI GCNGC 2 cut(s) 199, 222
HaeIII GGCC 1 cut(s) 186
HapII CCGG 1 cut(s) 145
Hin1II CATG 1 cut(s) 136
HinfI GANTC 1 cut(s) 178
HpaII CCGG 1 cut(s) 145
Hpy188I TCNGA 1 cut(s) 57
HpyAV CCTTC 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 208
HpyCH4V TGCA 2 cut(s) 201, 224
HpySE526I ACGT 1 cut(s) 208
Hsp92II CATG 1 cut(s) 136
Kzo9I GATC 4 cut(s) 18, 70, 99, 141
LmnI GCTCC 1 cut(s) 195
LpnPI CCDG 3 cut(s) 33, 60, 158
Lsp1109I GCAGC 2 cut(s) 185, 208
MaeI CTAG 1 cut(s) 158
MaeII ACGT 1 cut(s) 208
MaeIII GTNAC 1 cut(s) 23
MalI GATC 4 cut(s) 20, 72, 101, 143
MboI GATC 4 cut(s) 18, 70, 99, 141
MboII GAAGA 2 cut(s) 65, 74
MflI RGATCY 2 cut(s) 18, 141
MlyI GAGTC 1 cut(s) 187
MnlI CCTC 2 cut(s) 27, 238
MspI CCGG 1 cut(s) 145
MspR9I CCNGG 2 cut(s) 48, 146
Mva1269I GAATGC 1 cut(s) 51
MvaI CCWGG 1 cut(s) 48
NciI CCSGG 1 cut(s) 146
NdeII GATC 4 cut(s) 18, 70, 99, 141
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 23
PcsI WCGNNNNNNNCGW 1 cut(s) 214
PctI GAATGC 1 cut(s) 51
PkrI GCNGC 2 cut(s) 200, 223
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 1 cut(s) 185
PsuI RGATCY 2 cut(s) 18, 141
SatI GCNGC 2 cut(s) 199, 222
Sau3AI GATC 4 cut(s) 18, 70, 99, 141
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 1 cut(s) 187
ScrFI CCNGG 2 cut(s) 48, 146
SetI ASST 4 cut(s) 12, 200, 211, 223
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
SpeI ACTAGT 1 cut(s) 157
SspMI CTAG 1 cut(s) 158
StyD4I CCNGG 2 cut(s) 46, 144
TaiI ACGT 1 cut(s) 211
TseFI GTSAC 1 cut(s) 23
TseI GCWGC 2 cut(s) 198, 221
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 2 cut(s) 65, 149
TspGWI ACGGA 1 cut(s) 11
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.