FvH4_3g45880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000776
Physical Location & Seq
Reverse (-)
38039827 .. 38045403
5577 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g45880.t1

Sequence Viewer

Length: 1095 bp
ATGAAAGTCCGCTGTCATCGTAGCGAATCCGTAGGAAATTCCAAGAATGACCTTGGGGATCGGTTGCATTATGTGGTAAGGAGAGGGATATATCAGGGCAGTATACAAAGGGGGCAAGGACGAGGAAGAGAGGAAGAGAATGGGACCAGTGGCGAGCAACTTTGTTGCCGGCCAACAAAGAAATCGCCGAAAAACCGTCCGGTCTCGGGTCGGGTTAACGGGTTGAGCAGAGAGAGAGTGAAGACCATAACTTCTTCATACGAACTCTATTTTGAGCGTGCTATGGGTCCACGAACTCCGTTTAACGTCCTCTACGACTTTTATGAAGAAGATTGCCGATATCCTCCCCCCAATGCACCAACACCCCTTGAGTGTGAAGGTCATTTGATCAGCGCAAGGCGGGCTTTTTCAAAGGAGGGTTCTAAAAATGATCCACCCTTGAAAAGGGCTAAAGGGTTGATAAAAGGCTTAAAAGCCGAAGAGGTTGTCCGCCGAACGGGGAAGAATATCGAAGACAAGTCTGCTCATGGTACCGATGTGGATCCCGTGTCACTGGGAAATGGAAGTCTCGCCTCTTTCCTTCTCGAACTTGTCAAAATAACCAACACCCAGTGGGTGGTGTTGGCCGCCCTGGGTGGTGGCTTTGAGGCTCAGGCAAGCCATTGGTTGCCCGGTCCAGTAGTTCTCAAGCTCAAGCCGACTTTCTCCTTTGAACCATTCCAATCCGGCGTTTCTCAGTCCGGTGTGAGTTGCTCAATCCCAGTCCCGGGTTGTTCAGCCCAAATCGTTGGCAACGGTCCTGCTCTGTCCAGGCTGATCTCCCAAATCGTCACCGTCCTTACCCAGACCATGGCTTCGTCGGCTTTTTGCCCAAATTATTCAGACTCGATCTCCCAGATCTCCGACGAGGGACCTTCTTATTCTCTCATAGTCTGTGTTAGTGGCGATCGAATGGACGAGATTGGAGAAGAAGAAAGACCTAGAGGCGAGTTCGTTAGAGAAGCGATCCATGGGGTTTTGTTGTCATGGTTGACGGCGGAGTCAAGAAGGCTCTGGAAATCGGAGAGAGTGAAATCAAAGAAGGGTTGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

365

Amino Acids

40.08

Weight (kDa)

9.15

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1039
Acc65I GGTACC 1 cut(s) 530
AccB1I GGYRCC 1 cut(s) 530
AccB7I CCANNNNNTGG 2 cut(s) 616, 850
AccI GTMKAC 1 cut(s) 103
AciI CCGC 5 cut(s) 10, 400, 490, 627, 1037
AclWI GGATC 5 cut(s) 66, 425, 536, 549, 1000
AcoI YGGCCR 2 cut(s) 170, 624
AcsI RAATTY 1 cut(s) 37
AdeI CACNNNGTG 1 cut(s) 612
AfaI GTAC 1 cut(s) 532
AfiI CCNNNNNNNGG 7 cut(s) 206, 444, 496, 616, 766, 767, 850
AgsI TTSAA 3 cut(s) 411, 442, 713
AjnI CCWGG 2 cut(s) 630, 809
AluBI AGCT 1 cut(s) 691
AluI AGCT 1 cut(s) 691
Alw26I GTCTC 2 cut(s) 208, 572
AlwI GGATC 5 cut(s) 66, 425, 536, 549, 1000
Ama87I CYCGRG 2 cut(s) 205, 766
AoxI GGCC 2 cut(s) 170, 624
ApoI RAATTY 1 cut(s) 37
ArsI GACNNNNNNTTYG 4 cut(s) 471, 503, 838, 870
Asp718I GGTACC 1 cut(s) 530
AspLEI GCGC 1 cut(s) 395
AspS9I GGNCC 5 cut(s) 144, 287, 674, 797, 911
AsuC2I CCSGG 3 cut(s) 672, 767, 768
AsuHPI GGTGA 1 cut(s) 823
AvaI CYCGRG 2 cut(s) 205, 766
AvaII GGWCC 5 cut(s) 144, 287, 674, 797, 911
BaeI ACNNNNGTAYC 2 cut(s) 522, 555
BamHI GGATCC 1 cut(s) 541
BanI GGYRCC 1 cut(s) 530
BbsI GAAGAC 2 cut(s) 248, 519
BceAI ACGGC 1 cut(s) 1050
BciT130I CCWGG 2 cut(s) 632, 811
BclI TGATCA 1 cut(s) 387
BcnI CCSGG 3 cut(s) 672, 767, 768
BcoDI GTCTC 2 cut(s) 208, 572
BfaI CTAG 1 cut(s) 981
BglII AGATCT 1 cut(s) 897
BisI GCNGC 1 cut(s) 627
BlsI GCNGC 1 cut(s) 628
Bme1390I CCNGG 5 cut(s) 632, 672, 767, 768, 811
Bme18I GGWCC 5 cut(s) 144, 287, 674, 797, 911
BmeT110I CYCGRG 2 cut(s) 205, 766
BmgT120I GGNCC 5 cut(s) 144, 287, 674, 797, 911
BmiI GGNNCC 5 cut(s) 145, 288, 532, 543, 912
BmrFI CCNGG 5 cut(s) 632, 672, 767, 768, 811
BmrI ACTGGG 3 cut(s) 563, 604, 755
BmuI ACTGGG 3 cut(s) 563, 604, 755
BpiI GAAGAC 2 cut(s) 248, 519
Bpu10I CCTNAGC 1 cut(s) 651
BpuEI CTTGAG 3 cut(s) 389, 671, 677
BpuMI CCSGG 3 cut(s) 672, 767, 768
BsaBI GATNNNNATC 1 cut(s) 540
BsaI GGTCTC 1 cut(s) 208
BsaJI CCNNGG 6 cut(s) 52, 630, 631, 766, 849, 1009
BsaWI WCCGGW 2 cut(s) 199, 740
BsaXI ACNNNNNCTCC 2 cut(s) 875, 905
Bsc4I CCNNNNNNNGG 7 cut(s) 206, 444, 496, 616, 766, 767, 850
Bse118I RCCGGY 1 cut(s) 168
Bse1I ACTGG 5 cut(s) 147, 558, 610, 677, 761
Bse8I GATNNNNATC 1 cut(s) 540
BseBI CCWGG 2 cut(s) 632, 811
BseDI CCNNGG 6 cut(s) 52, 630, 631, 766, 849, 1009
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 7 cut(s) 206, 444, 496, 616, 766, 767, 850
BseMII CTCAG 2 cut(s) 665, 749
BseNI ACTGG 5 cut(s) 147, 558, 610, 677, 761
Bsh1285I CGRYCG 1 cut(s) 949
BshFI GGCC 2 cut(s) 172, 626
BshNI GGYRCC 1 cut(s) 530
BsiEI CGRYCG 1 cut(s) 949
BsiHKCI CYCGRG 2 cut(s) 205, 766
BsiSI CCGG 6 cut(s) 169, 200, 672, 726, 741, 767
BslFI GGGAC 3 cut(s) 157, 749, 924
BslI CCNNNNNNNGG 7 cut(s) 206, 444, 496, 616, 766, 767, 850
BsmAI GTCTC 2 cut(s) 208, 572
BsmFI GGGAC 3 cut(s) 157, 749, 924
BsnI GGCC 2 cut(s) 172, 626
Bso31I GGTCTC 1 cut(s) 208
BsoBI CYCGRG 2 cut(s) 205, 766
Bsp143I GATC 9 cut(s) 58, 387, 430, 541, 816, 888, 897, 946, 1005
Bsp19I CCATGG 2 cut(s) 849, 1009
BspACI CCGC 5 cut(s) 10, 400, 490, 627, 1037
BspANI GGCC 2 cut(s) 172, 626
BspCNI CTCAG 2 cut(s) 664, 748
BspLI GGNNCC 5 cut(s) 145, 288, 532, 543, 912
BspPI GGATC 5 cut(s) 66, 425, 536, 549, 1000
BspT107I GGYRCC 1 cut(s) 530
BspTNI GGTCTC 1 cut(s) 208
BsrFI RCCGGY 1 cut(s) 168
BsrI ACTGG 5 cut(s) 147, 558, 610, 677, 761
BssAI RCCGGY 1 cut(s) 168
BssECI CCNNGG 6 cut(s) 52, 630, 631, 766, 849, 1009
BssMI GATC 9 cut(s) 58, 387, 430, 541, 816, 888, 897, 946, 1005
BssNAI GTATAC 1 cut(s) 104
BssT1I CCWWGG 3 cut(s) 52, 849, 1009
Bst1107I GTATAC 1 cut(s) 104
Bst2UI CCWGG 2 cut(s) 632, 811
Bst4CI ACNGT 3 cut(s) 197, 797, 835
Bst6I CTCTTC 3 cut(s) 121, 129, 474
BstC8I GCNNGC 5 cut(s) 155, 170, 279, 402, 658
BstDEI CTNAG 2 cut(s) 651, 735
BstDSI CCRYGG 2 cut(s) 849, 1009
BstENI CCTNNNNNAGG 1 cut(s) 442
BstHHI GCGC 1 cut(s) 395
BstKTI GATC 9 cut(s) 61, 390, 433, 544, 819, 891, 900, 949, 1008
BstMAI GTCTC 2 cut(s) 208, 572
BstMBI GATC 9 cut(s) 58, 387, 430, 541, 816, 888, 897, 946, 1005
BstMCI CGRYCG 1 cut(s) 949
BstMWI GCNNNNNNNGC 2 cut(s) 401, 860
BstNI CCWGG 2 cut(s) 632, 811
BstSCI CCNGG 5 cut(s) 630, 670, 765, 766, 809
BstV2I GAAGAC 2 cut(s) 248, 519
BstX2I RGATCY 2 cut(s) 541, 897
BstXI CCANNNNNNTGG 1 cut(s) 788
BstYI RGATCY 2 cut(s) 541, 897
BstZ17I GTATAC 1 cut(s) 104
BsuRI GGCC 2 cut(s) 172, 626
BtgI CCRYGG 2 cut(s) 849, 1009
BtsIMutI CAGTG 3 cut(s) 154, 551, 617
Cac8I GCNNGC 5 cut(s) 155, 170, 279, 402, 658
CfoI GCGC 1 cut(s) 395
Cfr10I RCCGGY 1 cut(s) 168
Cfr13I GGNCC 5 cut(s) 144, 287, 674, 797, 911
Cfr9I CCCGGG 1 cut(s) 766
Csp6I GTAC 1 cut(s) 531
CviAII CATG 4 cut(s) 527, 850, 1010, 1026
CviQI GTAC 1 cut(s) 531
DdeI CTNAG 2 cut(s) 651, 735
DpnI GATC 9 cut(s) 60, 389, 432, 543, 818, 890, 899, 948, 1007
DpnII GATC 9 cut(s) 58, 387, 430, 541, 816, 888, 897, 946, 1005
DraIII CACNNNGTG 1 cut(s) 612
DrdI GACNNNNNNGTC 1 cut(s) 1039
DseDI GACNNNNNNGTC 1 cut(s) 1039
EaeI YGGCCR 2 cut(s) 170, 624
Eam1104I CTCTTC 3 cut(s) 121, 129, 474
EarI CTCTTC 3 cut(s) 121, 129, 474
EciI GGCGGA 2 cut(s) 479, 1052
Eco130I CCWWGG 3 cut(s) 52, 849, 1009
Eco31I GGTCTC 1 cut(s) 208
Eco32I GATATC 1 cut(s) 341
Eco47I GGWCC 5 cut(s) 144, 287, 674, 797, 911
Eco88I CYCGRG 2 cut(s) 205, 766
EcoNI CCTNNNNNAGG 1 cut(s) 442
EcoO109I RGGNCCY 1 cut(s) 911
EcoRII CCWGG 2 cut(s) 630, 809
EcoRV GATATC 1 cut(s) 341
EcoT14I CCWWGG 3 cut(s) 52, 849, 1009
ErhI CCWWGG 3 cut(s) 52, 849, 1009
FaeI CATG 4 cut(s) 530, 853, 1013, 1029
FalI AAGNNNNNCTT 2 cut(s) 388, 420
FaqI GGGAC 3 cut(s) 157, 749, 924
FatI CATG 4 cut(s) 526, 849, 1009, 1025
FauI CCCGC 1 cut(s) 393
FbaI TGATCA 1 cut(s) 387
FblI GTMKAC 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 627
Fsp4HI GCNGC 1 cut(s) 627
FspBI CTAG 1 cut(s) 981
GlaI GCGC 1 cut(s) 394
GluI GCNGC 1 cut(s) 627
HaeIII GGCC 2 cut(s) 172, 626
HapII CCGG 6 cut(s) 169, 200, 672, 726, 741, 767
HhaI GCGC 1 cut(s) 395
Hin1II CATG 4 cut(s) 530, 853, 1013, 1029
Hin6I GCGC 1 cut(s) 393
HinP1I GCGC 1 cut(s) 393
HincII GTYRAC 2 cut(s) 217, 1032
HindII GTYRAC 2 cut(s) 217, 1032
HinfI GANTC 3 cut(s) 26, 884, 1040
HpaI GTTAAC 1 cut(s) 217
HpaII CCGG 6 cut(s) 169, 200, 672, 726, 741, 767
HphI GGTGA 1 cut(s) 823
Hpy166II GTNNAC 4 cut(s) 104, 217, 290, 1032
Hpy188I TCNGA 3 cut(s) 883, 904, 1063
Hpy188III TCNNGA 3 cut(s) 584, 1044, 1054
Hpy8I GTNNAC 4 cut(s) 104, 217, 290, 1032
Hpy99I CGWCG 2 cut(s) 862, 908
HpyAV CCTTC 5 cut(s) 371, 590, 924, 1041, 1075
HpyCH4III ACNGT 3 cut(s) 197, 797, 835
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 2 cut(s) 67, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 401, 860
HpyF3I CTNAG 2 cut(s) 651, 735
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 4 cut(s) 530, 853, 1013, 1029
HspAI GCGC 1 cut(s) 393
KpnI GGTACC 1 cut(s) 534
KroI GCCGGC 1 cut(s) 168
KroNI GCCGGC 1 cut(s) 170
Ksp22I TGATCA 1 cut(s) 387
KspAI GTTAAC 1 cut(s) 217
Kzo9I GATC 9 cut(s) 58, 387, 430, 541, 816, 888, 897, 946, 1005
MaeI CTAG 1 cut(s) 981
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 2 cut(s) 549, 829
MalI GATC 9 cut(s) 60, 389, 432, 543, 818, 890, 899, 948, 1007
MboI GATC 9 cut(s) 58, 387, 430, 541, 816, 888, 897, 946, 1005
MflI RGATCY 2 cut(s) 541, 897
MluCI AATT 2 cut(s) 37, 874
MlyI GAGTC 2 cut(s) 878, 1049
MmeI TCCRAC 1 cut(s) 927
MroNI GCCGGC 1 cut(s) 168
MseI TTAA 3 cut(s) 216, 303, 470
MspA1I CMGCKG 1 cut(s) 12
MspI CCGG 6 cut(s) 169, 200, 672, 726, 741, 767
MspR9I CCNGG 5 cut(s) 632, 672, 767, 768, 811
MvaI CCWGG 2 cut(s) 632, 811
MwoI GCNNNNNNNGC 2 cut(s) 401, 860
NaeI GCCGGC 1 cut(s) 170
NciI CCSGG 3 cut(s) 672, 767, 768
NcoI CCATGG 2 cut(s) 849, 1009
NdeII GATC 9 cut(s) 58, 387, 430, 541, 816, 888, 897, 946, 1005
NgoMIV GCCGGC 1 cut(s) 168
NlaIII CATG 4 cut(s) 530, 853, 1013, 1029
NlaIV GGNNCC 5 cut(s) 145, 288, 532, 543, 912
NmuCI GTSAC 2 cut(s) 549, 829
PasI CCCWGGG 1 cut(s) 631
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PdiI GCCGGC 1 cut(s) 170
PfeI GAWTC 1 cut(s) 26
PflMI CCANNNNNTGG 2 cut(s) 616, 850
PkrI GCNGC 1 cut(s) 628
Ple19I CGATCG 1 cut(s) 949
PleI GAGTC 2 cut(s) 878, 1048
PpsI GAGTC 2 cut(s) 878, 1048
PpuMI RGGWCCY 1 cut(s) 911
Psp5II RGGWCCY 1 cut(s) 911
Psp6I CCWGG 2 cut(s) 630, 809
PspGI CCWGG 2 cut(s) 630, 809
PspN4I GGNNCC 5 cut(s) 145, 288, 532, 543, 912
PspPI GGNCC 5 cut(s) 144, 287, 674, 797, 911
PspPPI RGGWCCY 1 cut(s) 911
PsuI RGATCY 2 cut(s) 541, 897
PvuI CGATCG 1 cut(s) 949
RsaI GTAC 1 cut(s) 532
RsaNI GTAC 1 cut(s) 531
SaqAI TTAA 3 cut(s) 216, 303, 470
SatI GCNGC 1 cut(s) 627
Sau3AI GATC 9 cut(s) 58, 387, 430, 541, 816, 888, 897, 946, 1005
Sau96I GGNCC 5 cut(s) 144, 287, 674, 797, 911
SchI GAGTC 2 cut(s) 878, 1049
ScrFI CCNGG 5 cut(s) 632, 672, 767, 768, 811
SetI ASST 7 cut(s) 54, 309, 382, 486, 693, 916, 982
SinI GGWCC 5 cut(s) 144, 287, 674, 797, 911
SmaI CCCGGG 1 cut(s) 768
SmlI CTYRAG 3 cut(s) 368, 686, 692
SmoI CTYRAG 3 cut(s) 368, 686, 692
Sse9I AATT 2 cut(s) 37, 874
SsiI CCGC 5 cut(s) 10, 400, 490, 627, 1037
SspMI CTAG 1 cut(s) 981
StyD4I CCNGG 5 cut(s) 630, 670, 765, 766, 809
StyI CCWWGG 3 cut(s) 52, 849, 1009
TaaI ACNGT 3 cut(s) 197, 797, 835
TaiI ACGT 1 cut(s) 309
TaqI TCGA 4 cut(s) 510, 585, 887, 949
TasI AATT 2 cut(s) 37, 874
TauI GCSGC 1 cut(s) 629
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 3 cut(s) 216, 303, 470
Tru9I TTAA 3 cut(s) 216, 303, 470
TscAI CASTG 3 cut(s) 154, 558, 617
TseFI GTSAC 2 cut(s) 549, 829
Tsp45I GTSAC 2 cut(s) 549, 829
TspDTI ATGAA 3 cut(s) 17, 246, 339
TspGWI ACGGA 2 cut(s) 19, 288
TspMI CCCGGG 1 cut(s) 766
TspRI CASTG 3 cut(s) 154, 558, 617
Van91I CCANNNNNTGG 2 cut(s) 616, 850
VpaK11BI GGWCC 5 cut(s) 144, 287, 674, 797, 911
XagI CCTNNNNNAGG 1 cut(s) 442
XapI RAATTY 1 cut(s) 37
XmaI CCCGGG 1 cut(s) 766
XmiI GTMKAC 1 cut(s) 103
XspI CTAG 1 cut(s) 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.