FvH4_5g31450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000776
Physical Location & Seq
Forward (+)
22410645 .. 22410851
207 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31450.t1

Sequence Viewer

Length: 207 bp
ATGAACGAGATCCGGGGTATGGGACTAGTAGGCAGTTATGGTTTAAATCAAGGGCCCGATAGGAGCTGCACTTCACGTTCCCAACGAGCTGCACTTGTTGATATTGCTGTGGAGGAAGCCCGAAAGGCCAAGGAGGAAACCCGGAAAGCCAATGAGGAAGCCCGAAAAGCCAAGGAAAAGAACATACAAATCATGGCACGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.58

Weight (kDa)

9.65

Isoelectric Point (pI)

54.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 4
AfiI CCNNNNNNNGG 1 cut(s) 19
AhlI ACTAGT 1 cut(s) 25
AjiI CACGTC 1 cut(s) 200
AluBI AGCT 2 cut(s) 66, 89
AluI AGCT 2 cut(s) 66, 89
AlwI GGATC 1 cut(s) 4
AoxI GGCC 2 cut(s) 53, 126
ApaI GGGCCC 1 cut(s) 57
ApeKI GCWGC 2 cut(s) 66, 89
AspS9I GGNCC 2 cut(s) 53, 54
AsuC2I CCSGG 2 cut(s) 14, 142
BaeGI GKGCMC 1 cut(s) 57
BanII GRGCYC 1 cut(s) 57
BbvI GCAGC 2 cut(s) 53, 76
BcnI CCSGG 2 cut(s) 14, 142
BcuI ACTAGT 1 cut(s) 25
BfaI CTAG 1 cut(s) 26
BglI GCCNNNNNGGC 1 cut(s) 125
BisI GCNGC 2 cut(s) 67, 90
BlsI GCNGC 2 cut(s) 68, 91
Bme1390I CCNGG 2 cut(s) 14, 142
BmgBI CACGTC 1 cut(s) 200
BmgT120I GGNCC 2 cut(s) 53, 54
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 2 cut(s) 14, 142
BpuMI CCSGG 2 cut(s) 14, 142
BsaJI CCNNGG 3 cut(s) 13, 129, 171
Bsc4I CCNNNNNNNGG 1 cut(s) 19
BseDI CCNNGG 3 cut(s) 13, 129, 171
BseLI CCNNNNNNNGG 1 cut(s) 19
BseSI GKGCMC 1 cut(s) 57
BseXI GCAGC 2 cut(s) 53, 76
BsgI GTGCAG 2 cut(s) 52, 75
BshFI GGCC 2 cut(s) 55, 128
BsiSI CCGG 2 cut(s) 13, 142
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 36
BsnI GGCC 2 cut(s) 55, 128
Bsp120I GGGCCC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 1 cut(s) 9
BspANI GGCC 2 cut(s) 55, 128
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 1 cut(s) 4
BssECI CCNNGG 3 cut(s) 13, 129, 171
BssMI GATC 1 cut(s) 9
BssT1I CCWWGG 2 cut(s) 129, 171
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 125, 167
BstSCI CCNGG 2 cut(s) 12, 140
BstSLI GKGCMC 1 cut(s) 57
BstV1I GCAGC 2 cut(s) 53, 76
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
BsuRI GGCC 2 cut(s) 55, 128
BtrI CACGTC 1 cut(s) 200
Cfr13I GGNCC 2 cut(s) 53, 54
CviAII CATG 1 cut(s) 193
CviJI RGCY 8 cut(s) 55, 66, 89, 119, 128, 149, 161, 170
CviKI_1 RGCY 8 cut(s) 55, 66, 89, 119, 128, 149, 161, 170
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
DraI TTTAAA 1 cut(s) 45
Eco130I CCWWGG 2 cut(s) 129, 171
Eco24I GRGCYC 1 cut(s) 57
EcoO109I RGGNCCY 1 cut(s) 53
EcoT14I CCWWGG 2 cut(s) 129, 171
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 2 cut(s) 129, 171
FaeI CATG 1 cut(s) 196
FaiI YATR 4 cut(s) 20, 39, 185, 194
FaqI GGGAC 1 cut(s) 36
FatI CATG 1 cut(s) 192
Fnu4HI GCNGC 2 cut(s) 67, 90
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 2 cut(s) 67, 90
FspBI CTAG 1 cut(s) 26
GluI GCNGC 2 cut(s) 67, 90
HaeIII GGCC 2 cut(s) 55, 128
HapII CCGG 2 cut(s) 13, 142
Hin1II CATG 1 cut(s) 196
HpaII CCGG 2 cut(s) 13, 142
HpyCH4IV ACGT 2 cut(s) 76, 199
HpyCH4V TGCA 2 cut(s) 69, 92
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 167
HpySE526I ACGT 2 cut(s) 76, 199
Hsp92II CATG 1 cut(s) 196
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 2 cut(s) 26, 155
Lsp1109I GCAGC 2 cut(s) 53, 76
MaeI CTAG 1 cut(s) 26
MaeII ACGT 2 cut(s) 76, 199
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MflI RGATCY 1 cut(s) 9
MhlI GDGCHC 1 cut(s) 57
MnlI CCTC 3 cut(s) 106, 127, 148
MseI TTAA 2 cut(s) 44, 205
MspI CCGG 2 cut(s) 13, 142
MspR9I CCNGG 2 cut(s) 14, 142
MwoI GCNNNNNNNGC 2 cut(s) 125, 167
NciI CCSGG 2 cut(s) 14, 142
NdeII GATC 1 cut(s) 9
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 1 cut(s) 55
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PkrI GCNGC 2 cut(s) 68, 91
PspN4I GGNNCC 1 cut(s) 55
PspOMI GGGCCC 1 cut(s) 53
PspPI GGNCC 2 cut(s) 53, 54
PsuI RGATCY 1 cut(s) 9
SaqAI TTAA 2 cut(s) 44, 205
SatI GCNGC 2 cut(s) 67, 90
Sau3AI GATC 1 cut(s) 9
Sau96I GGNCC 2 cut(s) 53, 54
ScrFI CCNGG 2 cut(s) 14, 142
SduI GDGCHC 1 cut(s) 57
SetI ASST 4 cut(s) 68, 79, 91, 202
SpeI ACTAGT 1 cut(s) 25
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 2 cut(s) 12, 140
StyI CCWWGG 2 cut(s) 129, 171
TaiI ACGT 2 cut(s) 79, 202
Tru1I TTAA 2 cut(s) 44, 205
Tru9I TTAA 2 cut(s) 44, 205
TseI GCWGC 2 cut(s) 66, 89
TspDTI ATGAA 1 cut(s) 17
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.