FvH4_5g22931

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000776
Physical Location & Seq
Reverse (-)
14233885 .. 14234256
372 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g22931.t1

Sequence Viewer

Length: 279 bp
ATGGAGAAAGACTTGTGGTATGATTTAGACATACAAGTCGGAGAGAGGAAGAAGCTTTTTTACGGTCTCACTTGTTTTTTAATCATTGATTTTAATGATATAAAAGCGATTAAATGGATCAATAAAAGGGCGGCAAGTGTATTCCGTGAATGGAAGCACGACTTGTCAGAGATTCACAAGCTCGGGGGGAGAGACGTGATTCCGGAAAAGCTTTTGCACATGTGGGATGAATGGGAGTGGCTTTGTACGCATTTTAATCTGGACAAGTACATGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

93

Amino Acids

11.29

Weight (kDa)

6.05

Isoelectric Point (pI)

29.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 35
AccIII TCCGGA 1 cut(s) 202
AciI CCGC 1 cut(s) 131
AclWI GGATC 1 cut(s) 125
AfaI GTAC 2 cut(s) 247, 269
AflIII ACRYGT 1 cut(s) 219
AjiI CACGTC 1 cut(s) 196
AluBI AGCT 3 cut(s) 55, 181, 211
AluI AGCT 3 cut(s) 55, 181, 211
Alw26I GTCTC 2 cut(s) 71, 186
AlwI GGATC 1 cut(s) 125
Ama87I CYCGRG 1 cut(s) 182
Aor13HI TCCGGA 1 cut(s) 202
AvaI CYCGRG 1 cut(s) 182
BarI GAAGNNNNNNTAC 2 cut(s) 44, 76
BcoDI GTCTC 2 cut(s) 71, 186
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmeT110I CYCGRG 1 cut(s) 182
BmgBI CACGTC 1 cut(s) 196
BsaI GGTCTC 1 cut(s) 71
BsaWI WCCGGW 1 cut(s) 202
BseAI TCCGGA 1 cut(s) 202
BseGI GGATG 1 cut(s) 232
BsiHKCI CYCGRG 1 cut(s) 182
BsiSI CCGG 1 cut(s) 203
BsmAI GTCTC 2 cut(s) 71, 186
BsmBI CGTCTC 1 cut(s) 186
Bso31I GGTCTC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 182
Bsp13I TCCGGA 1 cut(s) 202
Bsp143I GATC 1 cut(s) 117
BspACI CCGC 1 cut(s) 131
BspEI TCCGGA 1 cut(s) 202
BspPI GGATC 1 cut(s) 125
BspTNI GGTCTC 1 cut(s) 71
BssMI GATC 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 65
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 1 cut(s) 120
BstMAI GTCTC 2 cut(s) 71, 186
BstMBI GATC 1 cut(s) 117
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstNSI RCATGY 1 cut(s) 223
BtrI CACGTC 1 cut(s) 196
BtsCI GGATG 1 cut(s) 232
Csp6I GTAC 2 cut(s) 246, 268
CviAII CATG 2 cut(s) 220, 271
CviJI RGCY 4 cut(s) 55, 181, 211, 241
CviKI_1 RGCY 4 cut(s) 55, 181, 211, 241
CviQI GTAC 2 cut(s) 246, 268
DpnI GATC 1 cut(s) 119
DpnII GATC 1 cut(s) 117
DrdI GACNNNNNNGTC 1 cut(s) 35
DseDI GACNNNNNNGTC 1 cut(s) 35
Eco31I GGTCTC 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 182
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 2 cut(s) 223, 274
FaiI YATR 6 cut(s) 21, 32, 101, 221, 272, 277
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FatI CATG 2 cut(s) 219, 270
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 132
HapII CCGG 1 cut(s) 203
Hin1II CATG 2 cut(s) 223, 274
HindIII AAGCTT 2 cut(s) 53, 209
HinfI GANTC 2 cut(s) 172, 199
HpaII CCGG 1 cut(s) 203
Hpy188I TCNGA 2 cut(s) 41, 169
Hpy188III TCNNGA 2 cut(s) 203, 260
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 217
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 2 cut(s) 223, 274
Kpn2I TCCGGA 1 cut(s) 202
Kzo9I GATC 1 cut(s) 117
LpnPI CCDG 2 cut(s) 216, 245
MaeII ACGT 1 cut(s) 195
MalI GATC 1 cut(s) 119
MboI GATC 1 cut(s) 117
MboII GAAGA 1 cut(s) 61
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 1 cut(s) 39
MroI TCCGGA 1 cut(s) 202
MseI TTAA 4 cut(s) 80, 93, 111, 255
MspI CCGG 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 247
NdeII GATC 1 cut(s) 117
NlaIII CATG 2 cut(s) 223, 274
NspI RCATGY 1 cut(s) 223
PciI ACATGT 1 cut(s) 219
PfeI GAWTC 2 cut(s) 172, 199
PkrI GCNGC 1 cut(s) 133
PscI ACATGT 1 cut(s) 219
RsaI GTAC 2 cut(s) 247, 269
RsaNI GTAC 2 cut(s) 246, 268
SaqAI TTAA 4 cut(s) 80, 93, 111, 255
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 1 cut(s) 117
SetI ASST 4 cut(s) 57, 183, 198, 213
SsiI CCGC 1 cut(s) 131
TaaI ACNGT 1 cut(s) 65
TaiI ACGT 1 cut(s) 198
TatI WGTACW 1 cut(s) 267
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 2 cut(s) 172, 199
Tru1I TTAA 4 cut(s) 80, 93, 111, 255
Tru9I TTAA 4 cut(s) 80, 93, 111, 255
TspDTI ATGAA 1 cut(s) 243
TspGWI ACGGA 1 cut(s) 134
XceI RCATGY 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.