Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000776

Physical Location & Seq

Genomic Coordinates Forward (+)

18490323 .. 18496954

Gene Structure 6632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g26653.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCGTTGGTTCTTGAGACCTCGACTTGTGTGATTGCACCTCCCCCTAATACCAAGACAGGGGTGGTAAAAGGCTTAAAAGCGGAGGAGATAGTCAAGAGGACTGGATTCAAGATTAAAGTAACTTGGGACGATTTCTGCCACGGTCTGAAGAGTAAAGAGTTAAGCAGCATGTTGACACACGACGTCGGCCACATTATACGGGACGAAATTTCCATGGTGGCTCCAACTTGGGGTGACACTACTGATGATGAGCAGAAGAAGCTGCCCACTAAACTCTTTATCTTTTATGAGTTTGATGTTGAAGATAAGCTCATGTGGAAGTGGTTGGACGACAAGGCTAAAAATAGAAGATCGACTGCAAACAAGAGTAACCGGGACAAGAAGACATTGCACCACCACACCGGGGCGAGGCCTTTCATCTACAATGCAAACGAATTGAAGGACAAGGGTGAACACCTCTATTTTATTAAACGTTACTCACAGGCGTATGACTCAACTCACAACCTGAAAGCAGCTGAAAATGAAGCTAAACTGATGGAGAAGGTTGATGAGATCCGTGACAATGTGAGGAAGAAATACCCTGGCATTCCGGAAGAAGATATTGATCTTCATTTTGACCAACAAACTCAGGCAATCGTGTTTGAAAAAGCATTTGGACATAGAAACATGAACGAGATCTGGGGCATGAGACTAGTAGGCAGTTATGGTTTAAGTCAAGGGCCCGATAGGAGCTGTACTTCACGTTCCCAACGAGCTGCACTTGTTGATATTGCTGTGGAGAAAGCTCGAAAGGCCAAGGAGGAAGCCCGGAAAGCCAATGAGGAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3

Protein Analysis

278

Amino Acids

31.8

Weight (kDa)

8.54

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000776)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15161 FvH4_1g18892 FvH4_1g18893 FvH4_1g20162 FvH4_1g26653 FvH4_1g29050 FvH4_1g29090 FvH4_1g29091 FvH4_2g00890 FvH4_2g00890 FvH4_2g14380 FvH4_2g17540 FvH4_2g19090 FvH4_2g19770 FvH4_2g30343 FvH4_2g30344 FvH4_2g30380 FvH4_2g34010 FvH4_3g18731 FvH4_3g21360 FvH4_3g23880 FvH4_3g26330 FvH4_3g26702 FvH4_3g30710 FvH4_3g30880 FvH4_3g31911 FvH4_3g32572 FvH4_3g38790 FvH4_3g45880 FvH4_4g03280 FvH4_4g08270 FvH4_4g08610 FvH4_4g08911 FvH4_4g10030 FvH4_4g10220 FvH4_4g10221 FvH4_4g10232 FvH4_4g10233 FvH4_4g10364 FvH4_4g14460 FvH4_4g16210 FvH4_4g27150 FvH4_5g06880 FvH4_5g13180 FvH4_5g19450 FvH4_5g20620 FvH4_5g22931 FvH4_5g24202 FvH4_5g24970 FvH4_5g31450 FvH4_5g31660 FvH4_5g32550 FvH4_6g06811 FvH4_6g17172 FvH4_6g17190 FvH4_6g18010 FvH4_6g21800 FvH4_6g21871 FvH4_6g23101 FvH4_6g23360 FvH4_6g24310 FvH4_6g30100 FvH4_6g31520 FvH4_6g31530 FvH4_6g34820 FvH4_6g35510 FvH4_6g40350 FvH4_6g40360 FvH4_7g09590 FvH4_7g16000

Species

Orthologous Gene IDs

fragaria_vesca

FvH4_1g15161 FvH4_1g18892 FvH4_1g18893 FvH4_1g20162 FvH4_1g26653 FvH4_1g29050 FvH4_1g29090 FvH4_1g29091 FvH4_2g00890 FvH4_2g00890 FvH4_2g14380 FvH4_2g17540 FvH4_2g19090 FvH4_2g19770 FvH4_2g30343 FvH4_2g30344 FvH4_2g30380 FvH4_2g34010 FvH4_3g18731 FvH4_3g21360 FvH4_3g23880 FvH4_3g26330 FvH4_3g26702 FvH4_3g30710 FvH4_3g30880 FvH4_3g31911 FvH4_3g32572 FvH4_3g38790 FvH4_3g45880 FvH4_4g03280 FvH4_4g08270 FvH4_4g08610 FvH4_4g08911 FvH4_4g10030 FvH4_4g10220 FvH4_4g10221 FvH4_4g10232 FvH4_4g10233 FvH4_4g10364 FvH4_4g14460 FvH4_4g16210 FvH4_4g27150 FvH4_5g06880 FvH4_5g13180 FvH4_5g19450 FvH4_5g20620 FvH4_5g22931 FvH4_5g24202 FvH4_5g24970 FvH4_5g31450 FvH4_5g31660 FvH4_5g32550 FvH4_6g06811 FvH4_6g17172 FvH4_6g17190 FvH4_6g18010 FvH4_6g21800 FvH4_6g21871 FvH4_6g23101 FvH4_6g23360 FvH4_6g24310 FvH4_6g30100 FvH4_6g31520 FvH4_6g31530 FvH4_6g34820 FvH4_6g35510 FvH4_6g40350 FvH4_6g40360 FvH4_7g09590 FvH4_7g16000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	189
AccIII	TCCGGA	1 cut(s)	592
AciI	CCGC	1 cut(s)	83
AclI	AACGTT	1 cut(s)	475
AclWI	GGATC	1 cut(s)	550
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	210
AcuI	CTGAAG	1 cut(s)	170
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	1 cut(s)	739
AfiI	CCNNNNNNNGG	4 cut(s)	60, 233, 406, 411
AgsI	TTSAA	4 cut(s)	112, 305, 442, 647
AhlI	ACTAGT	1 cut(s)	694
AjnI	CCWGG	1 cut(s)	583
AjuI	GAANNNNNNNTTGG	2 cut(s)	639, 671
AluBI	AGCT	7 cut(s)	265, 313, 518, 530, 735, 758, 788
AluI	AGCT	7 cut(s)	265, 313, 518, 530, 735, 758, 788
Alw26I	GTCTC	2 cut(s)	11, 685
AlwI	GGATC	1 cut(s)	550
Aor13HI	TCCGGA	1 cut(s)	592
AoxI	GGCC	4 cut(s)	190, 413, 722, 795
ApaI	GGGCCC	1 cut(s)	726
ApeKI	GCWGC	4 cut(s)	168, 265, 515, 758
ApoI	RAATTY	1 cut(s)	210
AspS9I	GGNCC	2 cut(s)	722, 723
AsuC2I	CCSGG	3 cut(s)	377, 406, 811
AsuHPI	GGTGA	2 cut(s)	248, 464
BaeGI	GKGCMC	1 cut(s)	726
BanII	GRGCYC	1 cut(s)	726
BbsI	GAAGAC	1 cut(s)	392
BbvI	GCAGC	4 cut(s)	180, 252, 527, 745
BccI	CCATC	1 cut(s)	532
BciT130I	CCWGG	1 cut(s)	585
BcnI	CCSGG	3 cut(s)	377, 406, 811
BcoDI	GTCTC	2 cut(s)	11, 685
BcuI	ACTAGT	1 cut(s)	694
BfaI	CTAG	1 cut(s)	695
BglII	AGATCT	1 cut(s)	678
BisI	GCNGC	4 cut(s)	169, 266, 516, 759
BlsI	GCNGC	4 cut(s)	170, 267, 517, 760
Bme1390I	CCNGG	4 cut(s)	377, 406, 585, 811
BmgT120I	GGNCC	2 cut(s)	722, 723
BmiI	GGNNCC	2 cut(s)	225, 724
BmrFI	CCNGG	4 cut(s)	377, 406, 585, 811
BpiI	GAAGAC	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	3 cut(s)	377, 406, 811
BsaBI	GATNNNNATC	1 cut(s)	606
BsaHI	GRCGYC	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	5 cut(s)	142, 216, 405, 583, 798
BsaWI	WCCGGW	1 cut(s)	592
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 233, 406, 411
Bse1I	ACTGG	1 cut(s)	109
Bse3DI	GCAATG	1 cut(s)	389
Bse8I	GATNNNNATC	1 cut(s)	606
BseAI	TCCGGA	1 cut(s)	592
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	5 cut(s)	142, 216, 405, 583, 798
BseJI	GATNNNNATC	1 cut(s)	606
BseLI	CCNNNNNNNGG	4 cut(s)	60, 233, 406, 411
BseMI	GCAATG	1 cut(s)	389
BseMII	CTCAG	1 cut(s)	644
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	726
BseXI	GCAGC	4 cut(s)	180, 252, 527, 745
BsgI	GTGCAG	1 cut(s)	744
BshFI	GGCC	4 cut(s)	192, 415, 724, 797
BsiSI	CCGG	4 cut(s)	376, 405, 593, 811
BslFI	GGGAC	3 cut(s)	143, 218, 392
BslI	CCNNNNNNNGG	4 cut(s)	60, 233, 406, 411
BsmAI	GTCTC	2 cut(s)	11, 685
BsmFI	GGGAC	3 cut(s)	143, 218, 392
BsmI	GAATGC	1 cut(s)	588
BsnI	GGCC	4 cut(s)	192, 415, 724, 797
Bso31I	GGTCTC	1 cut(s)	11
Bsp120I	GGGCCC	1 cut(s)	722
Bsp1286I	GDGCHC	1 cut(s)	726
Bsp13I	TCCGGA	1 cut(s)	592
Bsp143I	GATC	4 cut(s)	353, 555, 607, 678
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	4 cut(s)	192, 415, 724, 797
BspCNI	CTCAG	1 cut(s)	643
BspEI	TCCGGA	1 cut(s)	592
BspLI	GGNNCC	2 cut(s)	225, 724
BspPI	GGATC	1 cut(s)	550
BspTNI	GGTCTC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	389
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	5 cut(s)	142, 216, 405, 583, 798
BssMI	GATC	4 cut(s)	353, 555, 607, 678
BssNI	GRCGYC	1 cut(s)	186
BssT1I	CCWWGG	2 cut(s)	216, 798
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	146
BstACI	GRCGYC	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	630
BstDSI	CCRYGG	2 cut(s)	142, 216
BstKTI	GATC	4 cut(s)	356, 558, 610, 681
BstMAI	GTCTC	2 cut(s)	11, 685
BstMBI	GATC	4 cut(s)	353, 555, 607, 678
BstMWI	GCNNNNNNNGC	3 cut(s)	262, 794, 815
BstNI	CCWGG	1 cut(s)	585
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	4 cut(s)	375, 404, 583, 809
BstSLI	GKGCMC	1 cut(s)	726
BstV1I	GCAGC	4 cut(s)	180, 252, 527, 745
BstV2I	GAAGAC	1 cut(s)	392
BstX2I	RGATCY	2 cut(s)	555, 678
BstYI	RGATCY	2 cut(s)	555, 678
BsuRI	GGCC	4 cut(s)	192, 415, 724, 797
BtgI	CCRYGG	2 cut(s)	142, 216
Cfr13I	GGNCC	2 cut(s)	722, 723
Csp6I	GTAC	1 cut(s)	738
CviAII	CATG	5 cut(s)	172, 217, 316, 670, 688
CviQI	GTAC	1 cut(s)	738
DdeI	CTNAG	1 cut(s)	630
DpnI	GATC	4 cut(s)	355, 557, 609, 680
DpnII	GATC	4 cut(s)	353, 555, 607, 678
EaeI	YGGCCR	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco130I	CCWWGG	2 cut(s)	216, 798
Eco147I	AGGCCT	1 cut(s)	415
Eco24I	GRGCYC	1 cut(s)	726
Eco31I	GGTCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	722
EcoRII	CCWGG	1 cut(s)	583
EcoT14I	CCWWGG	2 cut(s)	216, 798
EcoT38I	GRGCYC	1 cut(s)	726
ErhI	CCWWGG	2 cut(s)	216, 798
FaeI	CATG	5 cut(s)	175, 220, 319, 673, 691
FaqI	GGGAC	3 cut(s)	143, 218, 392
FatI	CATG	5 cut(s)	171, 216, 315, 669, 687
Fnu4HI	GCNGC	4 cut(s)	169, 266, 516, 759
FriOI	GRGCYC	1 cut(s)	726
Fsp4HI	GCNGC	4 cut(s)	169, 266, 516, 759
FspBI	CTAG	1 cut(s)	695
GluI	GCNGC	4 cut(s)	169, 266, 516, 759
HaeIII	GGCC	4 cut(s)	192, 415, 724, 797
HapII	CCGG	4 cut(s)	376, 405, 593, 811
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	5 cut(s)	175, 220, 319, 673, 691
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HinfI	GANTC	2 cut(s)	108, 494
HpaII	CCGG	4 cut(s)	376, 405, 593, 811
HphI	GGTGA	2 cut(s)	248, 464
Hpy166II	GTNNAC	2 cut(s)	177, 455
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	4 cut(s)	14, 97, 112, 593
Hpy8I	GTNNAC	2 cut(s)	177, 455
Hpy99I	CGWCG	2 cut(s)	188, 191
HpyAV	CCTTC	2 cut(s)	436, 538
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	3 cut(s)	186, 475, 745
HpyCH4V	TGCA	5 cut(s)	38, 362, 394, 431, 761
HpyF10VI	GCNNNNNNNGC	3 cut(s)	262, 794, 815
HpyF3I	CTNAG	1 cut(s)	630
HpySE526I	ACGT	3 cut(s)	186, 475, 745
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	5 cut(s)	175, 220, 319, 673, 691
Kpn2I	TCCGGA	1 cut(s)	592
Kzo9I	GATC	4 cut(s)	353, 555, 607, 678
LmnI	GCTCC	2 cut(s)	229, 732
Lsp1109I	GCAGC	4 cut(s)	180, 252, 527, 745
MaeI	CTAG	1 cut(s)	695
MaeII	ACGT	3 cut(s)	186, 475, 745
MaeIII	GTNAC	5 cut(s)	121, 236, 371, 476, 560
MalI	GATC	4 cut(s)	355, 557, 609, 680
MboI	GATC	4 cut(s)	353, 555, 607, 678
MboII	GAAGA	9 cut(s)	163, 271, 317, 363, 397, 586, 602, 608, 611
MflI	RGATCY	2 cut(s)	555, 678
MhlI	GDGCHC	1 cut(s)	726
MluCI	AATT	2 cut(s)	210, 437
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	2 cut(s)	251, 309
MnlI	CCTC	9 cut(s)	31, 51, 79, 93, 405, 470, 564, 796, 817
MroI	TCCGGA	1 cut(s)	592
MseI	TTAA	5 cut(s)	77, 117, 164, 471, 713
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	4 cut(s)	376, 405, 593, 811
MspR9I	CCNGG	4 cut(s)	377, 406, 585, 811
Mva1269I	GAATGC	1 cut(s)	588
MvaI	CCWGG	1 cut(s)	585
MwoI	GCNNNNNNNGC	3 cut(s)	262, 794, 815
NciI	CCSGG	3 cut(s)	377, 406, 811
NcoI	CCATGG	1 cut(s)	216
NdeII	GATC	4 cut(s)	353, 555, 607, 678
NlaIII	CATG	5 cut(s)	175, 220, 319, 673, 691
NlaIV	GGNNCC	2 cut(s)	225, 724
NmuCI	GTSAC	2 cut(s)	236, 560
NspI	RCATGY	1 cut(s)	175
PceI	AGGCCT	1 cut(s)	415
PcsI	WCGNNNNNNNCGW	1 cut(s)	751
PctI	GAATGC	1 cut(s)	588
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	4 cut(s)	170, 267, 517, 760
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
Psp1406I	AACGTT	1 cut(s)	475
Psp6I	CCWGG	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	583
PspN4I	GGNNCC	2 cut(s)	225, 724
PspOMI	GGGCCC	1 cut(s)	722
PspPI	GGNCC	2 cut(s)	722, 723
PsrI	GAACNNNNNNTAC	2 cut(s)	730, 762
PsuI	RGATCY	2 cut(s)	555, 678
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	1 cut(s)	739
RsaNI	GTAC	1 cut(s)	738
SaqAI	TTAA	5 cut(s)	77, 117, 164, 471, 713
SatI	GCNGC	4 cut(s)	169, 266, 516, 759
Sau3AI	GATC	4 cut(s)	353, 555, 607, 678
Sau96I	GGNCC	2 cut(s)	722, 723
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	4 cut(s)	377, 406, 585, 811
SduI	GDGCHC	1 cut(s)	726
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
SpeI	ACTAGT	1 cut(s)	694
Sse9I	AATT	2 cut(s)	210, 437
SseBI	AGGCCT	1 cut(s)	415
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	1 cut(s)	695
StuI	AGGCCT	1 cut(s)	415
StyD4I	CCNGG	4 cut(s)	375, 404, 583, 809
StyI	CCWWGG	2 cut(s)	216, 798
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	3 cut(s)	189, 478, 748
TaqI	TCGA	3 cut(s)	23, 356, 790
TasI	AATT	2 cut(s)	210, 437
TatI	WGTACW	1 cut(s)	737
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	5 cut(s)	77, 117, 164, 471, 713
Tru9I	TTAA	5 cut(s)	77, 117, 164, 471, 713
TseFI	GTSAC	2 cut(s)	236, 560
TseI	GCWGC	4 cut(s)	168, 265, 515, 758
Tsp45I	GTSAC	2 cut(s)	236, 560
TspDTI	ATGAA	4 cut(s)	409, 540, 602, 686
TspGWI	ACGGA	1 cut(s)	548
XapI	RAATTY	1 cut(s)	210
XceI	RCATGY	1 cut(s)	175
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XspI	CTAG	1 cut(s)	695
ZraI	GACGTC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.