Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000776

Physical Location & Seq

Genomic Coordinates Forward (+)

19828696 .. 19830748

Gene Structure 2053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g26702.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTGGGCGTGGCTTGAAGATAAGGCGGGTACCATATATCGAGATTGGAATGAGGACTTTTCAAGGCACTATAAGAAGTATGGGAGAGAAACAATTCCGCCAGATTTGATACACAGGCAGGATGAGTGGGACTGGCTTTGCTGGCACTTTAAGTCTCCTGATTTCAAGACACGATCGGCGGCTAACACGACCAACTGTGGTAAGAAGGAGTCGGAGCACCACACGGGGCGGCTATCTATCATCTACAGGGTGGTCCGCCACAAAGAAAAGGGTGAGGAATTTCCTGTTATCCCAGCTTACACAGAGACGTATGACACAGTCAACGACCCTAAAGCTGTCAAGAATCTTGAGGAAATGCAAAAGGAGGCCACTGAATTGAAAAATGCACAGAAGAATGCAAACCCTGACATCCCAGAGGCTGAGCTCCCACCTTTGGACTGGTCAATGAATATTAAGGTGCTTCAAGCAGGAGTCGGCAGAAGAGCCGGGAAGGAGATTCGTGGTCTTGGAAGAGCAGGTGTCCAAGTGTCATCATCTTCCACTCCACGTTCTCGAGTATATGAGGTGGAGGAGAGATTACATAAAGCTCAGGAAAGGGTCGAAAAAGCTGAGGCGGTTGTGCAGAACCTTAATGAAGAGATGACATTGGTGAAGCAGCAACTAGCAGCAGTGATGTCTTTTATGGCGCAGCAGACTGGGTGTGACACACCCCAATTTTTTTTTGAAAGGAAATTTTCAAAAATTTTGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transposase_24

Protein Analysis

251

Amino Acids

28.96

Weight (kDa)

7.07

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000776)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15161 FvH4_1g18892 FvH4_1g18893 FvH4_1g20162 FvH4_1g26653 FvH4_1g29050 FvH4_1g29090 FvH4_1g29091 FvH4_2g00890 FvH4_2g00890 FvH4_2g14380 FvH4_2g17540 FvH4_2g19090 FvH4_2g19770 FvH4_2g30343 FvH4_2g30344 FvH4_2g30380 FvH4_2g34010 FvH4_3g18731 FvH4_3g21360 FvH4_3g23880 FvH4_3g26330 FvH4_3g26702 FvH4_3g30710 FvH4_3g30880 FvH4_3g31911 FvH4_3g32572 FvH4_3g38790 FvH4_3g45880 FvH4_4g03280 FvH4_4g08270 FvH4_4g08610 FvH4_4g08911 FvH4_4g10030 FvH4_4g10220 FvH4_4g10221 FvH4_4g10232 FvH4_4g10233 FvH4_4g10364 FvH4_4g14460 FvH4_4g16210 FvH4_4g27150 FvH4_5g06880 FvH4_5g13180 FvH4_5g19450 FvH4_5g20620 FvH4_5g22931 FvH4_5g24202 FvH4_5g24970 FvH4_5g31450 FvH4_5g31660 FvH4_5g32550 FvH4_6g06811 FvH4_6g17172 FvH4_6g17190 FvH4_6g18010 FvH4_6g21800 FvH4_6g21871 FvH4_6g23101 FvH4_6g23360 FvH4_6g24310 FvH4_6g30100 FvH4_6g31520 FvH4_6g31530 FvH4_6g34820 FvH4_6g35510 FvH4_6g40350 FvH4_6g40360 FvH4_7g09590 FvH4_7g16000

Species

Orthologous Gene IDs

fragaria_vesca

FvH4_1g15161 FvH4_1g18892 FvH4_1g18893 FvH4_1g20162 FvH4_1g26653 FvH4_1g29050 FvH4_1g29090 FvH4_1g29091 FvH4_2g00890 FvH4_2g00890 FvH4_2g14380 FvH4_2g17540 FvH4_2g19090 FvH4_2g19770 FvH4_2g30343 FvH4_2g30344 FvH4_2g30380 FvH4_2g34010 FvH4_3g18731 FvH4_3g21360 FvH4_3g23880 FvH4_3g26330 FvH4_3g26702 FvH4_3g30710 FvH4_3g30880 FvH4_3g31911 FvH4_3g32572 FvH4_3g38790 FvH4_3g45880 FvH4_4g03280 FvH4_4g08270 FvH4_4g08610 FvH4_4g08911 FvH4_4g10030 FvH4_4g10220 FvH4_4g10221 FvH4_4g10232 FvH4_4g10233 FvH4_4g10364 FvH4_4g14460 FvH4_4g16210 FvH4_4g27150 FvH4_5g06880 FvH4_5g13180 FvH4_5g19450 FvH4_5g20620 FvH4_5g22931 FvH4_5g24202 FvH4_5g24970 FvH4_5g31450 FvH4_5g31660 FvH4_5g32550 FvH4_6g06811 FvH4_6g17172 FvH4_6g17190 FvH4_6g18010 FvH4_6g21800 FvH4_6g21871 FvH4_6g23101 FvH4_6g23360 FvH4_6g24310 FvH4_6g30100 FvH4_6g31520 FvH4_6g31530 FvH4_6g34820 FvH4_6g35510 FvH4_6g40350 FvH4_6g40360 FvH4_7g09590 FvH4_7g16000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	506
Acc36I	ACCTGC	1 cut(s)	506
Acc65I	GGTACC	1 cut(s)	29
AccB1I	GGYRCC	1 cut(s)	29
AciI	CCGC	6 cut(s)	26, 98, 179, 229, 256, 614
AcsI	RAATTY	3 cut(s)	278, 731, 741
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgsI	TTSAA	7 cut(s)	17, 63, 166, 379, 464, 725, 738
AluBI	AGCT	5 cut(s)	296, 335, 424, 587, 608
AluI	AGCT	5 cut(s)	296, 335, 424, 587, 608
Alw21I	GWGCWC	2 cut(s)	219, 426
Alw26I	GTCTC	2 cut(s)	159, 299
AlwNI	CAGNNNCTG	1 cut(s)	419
Ama87I	CYCGRG	1 cut(s)	552
AoxI	GGCC	1 cut(s)	366
ApeKI	GCWGC	3 cut(s)	655, 665, 688
ApoI	RAATTY	3 cut(s)	278, 731, 741
Asp700I	GAANNNNTTC	1 cut(s)	93
Asp718I	GGTACC	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	688
AspS9I	GGNCC	1 cut(s)	253
AsuC2I	CCSGG	1 cut(s)	487
AsuHPI	GGTGA	2 cut(s)	284, 661
AvaI	CYCGRG	1 cut(s)	552
AvaII	GGWCC	1 cut(s)	253
BanI	GGYRCC	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	426
Bbv12I	GWGCWC	2 cut(s)	219, 426
BbvCI	CCTCAGC	1 cut(s)	609
BbvI	GCAGC	3 cut(s)	667, 677, 700
BcnI	CCSGG	1 cut(s)	487
BcoDI	GTCTC	2 cut(s)	159, 299
BfaI	CTAG	1 cut(s)	662
BfmI	CTRYAG	1 cut(s)	244
BfuAI	ACCTGC	1 cut(s)	506
BisI	GCNGC	5 cut(s)	180, 230, 656, 666, 689
BlpI	GCTNAGC	1 cut(s)	420
BlsI	GCNGC	5 cut(s)	181, 231, 657, 667, 690
Bme1390I	CCNGG	1 cut(s)	487
Bme18I	GGWCC	1 cut(s)	253
BmeT110I	CYCGRG	1 cut(s)	552
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	487
BmrI	ACTGGG	1 cut(s)	705
BmuI	ACTGGG	1 cut(s)	705
Bpu10I	CCTNAGC	2 cut(s)	588, 609
Bpu1102I	GCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	3 cut(s)	137, 443, 700
BseGI	GGATG	2 cut(s)	127, 408
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMII	CTCAG	3 cut(s)	411, 600, 602
BseNI	ACTGG	3 cut(s)	137, 443, 700
BseRI	GAGGAG	1 cut(s)	584
BseXI	GCAGC	3 cut(s)	667, 677, 700
BseYI	CCCAGC	1 cut(s)	292
BsgI	GTGCAG	1 cut(s)	641
Bsh1285I	CGRYCG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	368
BshNI	GGYRCC	1 cut(s)	29
BsiEI	CGRYCG	1 cut(s)	176
BsiHKAI	GWGCWC	2 cut(s)	219, 426
BsiHKCI	CYCGRG	1 cut(s)	552
BsiSI	CCGG	1 cut(s)	486
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	2 cut(s)	159, 299
BsmBI	CGTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	400
BsnI	GGCC	1 cut(s)	368
BsoBI	CYCGRG	1 cut(s)	552
Bsp1286I	GDGCHC	2 cut(s)	219, 426
Bsp143I	GATC	1 cut(s)	173
Bsp1720I	GCTNAGC	1 cut(s)	420
BspACI	CCGC	6 cut(s)	26, 98, 179, 229, 256, 614
BspANI	GGCC	1 cut(s)	368
BspCNI	CTCAG	3 cut(s)	412, 601, 601
BspLI	GGNNCC	1 cut(s)	31
BspMI	ACCTGC	1 cut(s)	506
BspQI	GCTCTTC	2 cut(s)	475, 505
BspT107I	GGYRCC	1 cut(s)	29
BsrI	ACTGG	3 cut(s)	137, 443, 700
BssMI	GATC	1 cut(s)	173
Bst4CI	ACNGT	2 cut(s)	197, 319
Bst6I	CTCTTC	3 cut(s)	475, 505, 630
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	3 cut(s)	420, 588, 609
BstF5I	GGATG	2 cut(s)	127, 408
BstHHI	GCGC	1 cut(s)	688
BstKTI	GATC	1 cut(s)	176
BstMAI	GTCTC	2 cut(s)	159, 299
BstMBI	GATC	1 cut(s)	173
BstMCI	CGRYCG	1 cut(s)	176
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	485
BstSFI	CTRYAG	1 cut(s)	244
BstV1I	GCAGC	3 cut(s)	667, 677, 700
BsuRI	GGCC	1 cut(s)	368
BtsCI	GGATG	2 cut(s)	127, 408
BtsI	GCAGTG	1 cut(s)	675
BtsIMutI	CAGTG	2 cut(s)	369, 675
BveI	ACCTGC	1 cut(s)	506
Cac8I	GCNNGC	1 cut(s)	143
CaiI	CAGNNNCTG	1 cut(s)	419
CfoI	GCGC	1 cut(s)	688
Cfr13I	GGNCC	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	30
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	3 cut(s)	420, 588, 609
DpnI	GATC	1 cut(s)	175
DpnII	GATC	1 cut(s)	173
Eam1104I	CTCTTC	3 cut(s)	475, 505, 630
EarI	CTCTTC	3 cut(s)	475, 505, 630
EciI	GGCGGA	2 cut(s)	87, 245
Ecl136II	GAGCTC	1 cut(s)	424
Eco24I	GRGCYC	1 cut(s)	426
Eco47I	GGWCC	1 cut(s)	253
Eco53kI	GAGCTC	1 cut(s)	424
Eco88I	CYCGRG	1 cut(s)	552
EcoICRI	GAGCTC	1 cut(s)	424
EcoT38I	GRGCYC	1 cut(s)	426
Esp3I	CGTCTC	1 cut(s)	299
FaqI	GGGAC	1 cut(s)	143
FauI	CCCGC	1 cut(s)	19
Fnu4HI	GCNGC	5 cut(s)	180, 230, 656, 666, 689
FokI	GGATG	2 cut(s)	134, 395
FriOI	GRGCYC	1 cut(s)	426
Fsp4HI	GCNGC	5 cut(s)	180, 230, 656, 666, 689
FspBI	CTAG	1 cut(s)	662
GlaI	GCGC	1 cut(s)	687
GluI	GCNGC	5 cut(s)	180, 230, 656, 666, 689
GsaI	CCCAGC	1 cut(s)	296
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	1 cut(s)	486
HhaI	GCGC	1 cut(s)	688
Hin6I	GCGC	1 cut(s)	686
HinP1I	GCGC	1 cut(s)	686
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	4 cut(s)	209, 343, 471, 496
HpaII	CCGG	1 cut(s)	486
HphI	GGTGA	2 cut(s)	284, 661
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	7 cut(s)	41, 158, 166, 340, 347, 552, 590
Hpy8I	GTNNAC	1 cut(s)	322
HpyAV	CCTTC	2 cut(s)	199, 484
HpyCH4III	ACNGT	2 cut(s)	197, 319
HpyCH4IV	ACGT	2 cut(s)	308, 547
HpyCH4V	TGCA	4 cut(s)	358, 386, 398, 622
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	3 cut(s)	420, 588, 609
HpySE526I	ACGT	2 cut(s)	308, 547
HspAI	GCGC	1 cut(s)	686
KpnI	GGTACC	1 cut(s)	33
Kzo9I	GATC	1 cut(s)	173
LguI	GCTCTTC	2 cut(s)	475, 505
LmnI	GCTCC	2 cut(s)	214, 429
Lsp1109I	GCAGC	3 cut(s)	667, 677, 700
MaeI	CTAG	1 cut(s)	662
MaeII	ACGT	2 cut(s)	308, 547
MaeIII	GTNAC	1 cut(s)	701
MalI	GATC	1 cut(s)	175
MboI	GATC	1 cut(s)	173
MboII	GAAGA	6 cut(s)	29, 403, 492, 522, 528, 647
MhlI	GDGCHC	2 cut(s)	219, 426
MluCI	AATT	6 cut(s)	93, 278, 374, 713, 731, 741
MlyI	GAGTC	2 cut(s)	218, 480
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	8 cut(s)	46, 268, 343, 358, 409, 556, 562, 604
MroXI	GAANNNNTTC	1 cut(s)	93
MseI	TTAA	3 cut(s)	150, 453, 630
MspI	CCGG	1 cut(s)	486
MspR9I	CCNGG	1 cut(s)	487
Mva1269I	GAATGC	1 cut(s)	400
MwoI	GCNNNNNNNGC	1 cut(s)	142
NciI	CCSGG	1 cut(s)	487
NdeII	GATC	1 cut(s)	173
NlaIV	GGNNCC	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	701
PaeR7I	CTCGAG	1 cut(s)	552
PaqCI	CACCTGC	1 cut(s)	506
PciSI	GCTCTTC	2 cut(s)	475, 505
PctI	GAATGC	1 cut(s)	400
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	2 cut(s)	343, 496
PflFI	GACNNNGTC	1 cut(s)	317
PkrI	GCNGC	5 cut(s)	181, 231, 657, 667, 690
Ple19I	CGATCG	1 cut(s)	176
PleI	GAGTC	2 cut(s)	217, 479
PpsI	GAGTC	2 cut(s)	217, 479
Psp124BI	GAGCTC	1 cut(s)	426
PspFI	CCCAGC	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	253
PstNI	CAGNNNCTG	1 cut(s)	419
PsyI	GACNNNGTC	1 cut(s)	317
PvuI	CGATCG	1 cut(s)	176
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
SacI	GAGCTC	1 cut(s)	426
SapI	GCTCTTC	2 cut(s)	475, 505
SaqAI	TTAA	3 cut(s)	150, 453, 630
SatI	GCNGC	5 cut(s)	180, 230, 656, 666, 689
Sau3AI	GATC	1 cut(s)	173
Sau96I	GGNCC	1 cut(s)	253
SchI	GAGTC	2 cut(s)	218, 480
ScrFI	CCNGG	1 cut(s)	487
SduI	GDGCHC	2 cut(s)	219, 426
SfcI	CTRYAG	1 cut(s)	244
Sfr274I	CTCGAG	1 cut(s)	552
SinI	GGWCC	1 cut(s)	253
SlaI	CTCGAG	1 cut(s)	552
SmlI	CTYRAG	2 cut(s)	347, 552
SmoI	CTYRAG	2 cut(s)	347, 552
Sse9I	AATT	6 cut(s)	93, 278, 374, 713, 731, 741
SsiI	CCGC	6 cut(s)	26, 98, 179, 229, 256, 614
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	1 cut(s)	662
SstI	GAGCTC	1 cut(s)	426
StyD4I	CCNGG	1 cut(s)	485
TaaI	ACNGT	2 cut(s)	197, 319
TaiI	ACGT	2 cut(s)	311, 550
TaqI	TCGA	3 cut(s)	40, 553, 600
TasI	AATT	6 cut(s)	93, 278, 374, 713, 731, 741
TauI	GCSGC	2 cut(s)	182, 232
TfiI	GAWTC	2 cut(s)	343, 496
Tru1I	TTAA	3 cut(s)	150, 453, 630
Tru9I	TTAA	3 cut(s)	150, 453, 630
TscAI	CASTG	2 cut(s)	376, 675
TseFI	GTSAC	1 cut(s)	701
TseI	GCWGC	3 cut(s)	655, 665, 688
Tsp45I	GTSAC	1 cut(s)	701
TspDTI	ATGAA	2 cut(s)	461, 648
TspRI	CASTG	2 cut(s)	376, 675
Tth111I	GACNNNGTC	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	3 cut(s)	278, 731, 741
XcmI	CCANNNNNNNNNTGG	1 cut(s)	435
XhoI	CTCGAG	1 cut(s)	552
XmnI	GAANNNNTTC	1 cut(s)	93
XspI	CTAG	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.