FvH4_4g10364

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000776
Physical Location & Seq
Reverse (-)
13928760 .. 13929569
810 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10364.t1

Sequence Viewer

Length: 663 bp
ATGCCGCCGGTGCTCGGGAAAAGGAAAGCTCGGGAGGAGGCGGAGGAGCGTCTGCGACTGGAGTGTGCGCAACAATACGGCTCCTCTTCTGCCGGATCCAACATAGCCACTCCGACGACGACGGTGTCTGCAGGATCTCTTGCTTCATCGGCTCCCCCTCTAACTGACAACGATGACGAGTCAACGACCCTCCACGTAGAAACACAGTCTGAGGGTGCACCTAGGGTTGTCAACGCTCACCGGAAACCGAAGAAAAGCGGAGGACCTCCCCAGAAAGGCAACCGGGGTGTGGTGAACTGCTTAAAGGAGGTTATTGATGGACTTCGTAATTCTGATGTATGCAACCTGTTTGTCAATAGTGTTGGAAGCATTATACGGAAAAAAGTGGCAATGAAGAAGGAATCGTGGTATGATTTAGACAAAGAGGAGAGGAAGAAGCTTTTTGACGGTCTAACTTGCTTTTTTATCATTGATTTTAATGATATAAAAGCTATTAAATGGATCAATAAAAGGACGGCAAGTGTATTCCGTGAATGGAAGCACTACTTGTCTGAGATTCACAAGCTCAGGGGGAGAGATGTGATTCCGGAAGAGCTTTTGCACAGGCGGGATGAGTGGGAGTGGCTTTGCACGCATTTTGATTTGGACAAGTACAAGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

221

Amino Acids

25.01

Weight (kDa)

8.89

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 124
Acc16I TGCGCA 1 cut(s) 69
AccIII TCCGGA 1 cut(s) 586
AciI CCGC 4 cut(s) 5, 41, 258, 607
AclWI GGATC 4 cut(s) 90, 103, 142, 509
AfaI GTAC 1 cut(s) 653
AfiI CCNNNNNNNGG 3 cut(s) 14, 275, 289
AluBI AGCT 5 cut(s) 29, 439, 491, 565, 595
AluI AGCT 5 cut(s) 29, 439, 491, 565, 595
Alw21I GWGCWC 2 cut(s) 15, 220
Alw44I GTGCAC 1 cut(s) 216
AlwI GGATC 4 cut(s) 90, 103, 142, 509
Ama87I CYCGRG 2 cut(s) 14, 30
Aor13HI TCCGGA 1 cut(s) 586
ApaLI GTGCAC 1 cut(s) 216
AspA2I CCTAGG 1 cut(s) 221
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 1 cut(s) 284
AsuHPI GGTGA 2 cut(s) 230, 304
AvaI CYCGRG 2 cut(s) 14, 30
AvaII GGWCC 1 cut(s) 263
AvrII CCTAGG 1 cut(s) 221
BaeGI GKGCMC 1 cut(s) 220
BamHI GGATCC 1 cut(s) 95
Bbv12I GWGCWC 2 cut(s) 15, 220
BccI CCATC 1 cut(s) 311
BceAI ACGGC 2 cut(s) 94, 531
BcnI CCSGG 1 cut(s) 284
BfaI CTAG 1 cut(s) 222
BfmI CTRYAG 1 cut(s) 129
BisI GCNGC 1 cut(s) 5
BlnI CCTAGG 1 cut(s) 221
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 284
Bme18I GGWCC 1 cut(s) 263
BmeT110I CYCGRG 2 cut(s) 14, 30
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 3 cut(s) 82, 97, 153
BmrFI CCNGG 1 cut(s) 284
BpmI CTGGAG 1 cut(s) 80
Bpu10I CCTNAGC 1 cut(s) 566
BpuMI CCSGG 1 cut(s) 284
BsaAI YACGTR 1 cut(s) 196
BsaJI CCNNGG 2 cut(s) 221, 283
BsaWI WCCGGW 2 cut(s) 240, 586
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 275, 289
Bse118I RCCGGY 1 cut(s) 7
Bse1I ACTGG 1 cut(s) 63
Bse3DI GCAATG 1 cut(s) 396
BseAI TCCGGA 1 cut(s) 586
BseDI CCNNGG 2 cut(s) 221, 283
BseGI GGATG 1 cut(s) 616
BseLI CCNNNNNNNGG 3 cut(s) 14, 275, 289
BseMI GCAATG 1 cut(s) 396
BseMII CTCAG 3 cut(s) 201, 543, 580
BseNI ACTGG 1 cut(s) 63
BseRI GAGGAG 4 cut(s) 50, 59, 73, 440
BseSI GKGCMC 1 cut(s) 220
BsiHKAI GWGCWC 2 cut(s) 15, 220
BsiHKCI CYCGRG 2 cut(s) 14, 30
BsiSI CCGG 5 cut(s) 8, 93, 241, 283, 587
BslI CCNNNNNNNGG 3 cut(s) 14, 275, 289
BsoBI CYCGRG 2 cut(s) 14, 30
Bsp1286I GDGCHC 2 cut(s) 15, 220
Bsp13I TCCGGA 1 cut(s) 586
Bsp143I GATC 3 cut(s) 95, 134, 501
BspACI CCGC 4 cut(s) 5, 41, 258, 607
BspCNI CTCAG 3 cut(s) 202, 544, 579
BspEI TCCGGA 1 cut(s) 586
BspLI GGNNCC 3 cut(s) 82, 97, 153
BspMAI CTGCAG 1 cut(s) 133
BspPI GGATC 4 cut(s) 90, 103, 142, 509
BspQI GCTCTTC 1 cut(s) 585
BsrDI GCAATG 1 cut(s) 396
BsrFI RCCGGY 1 cut(s) 7
BsrI ACTGG 1 cut(s) 63
BssAI RCCGGY 1 cut(s) 7
BssECI CCNNGG 2 cut(s) 221, 283
BssMI GATC 3 cut(s) 95, 134, 501
BssT1I CCWWGG 1 cut(s) 221
Bst4CI ACNGT 3 cut(s) 124, 207, 449
Bst6I CTCTTC 2 cut(s) 91, 585
BstBAI YACGTR 1 cut(s) 196
BstC8I GCNNGC 1 cut(s) 632
BstDEI CTNAG 3 cut(s) 210, 552, 566
BstF5I GGATG 1 cut(s) 616
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 3 cut(s) 98, 137, 504
BstMBI GATC 3 cut(s) 95, 134, 501
BstMWI GCNNNNNNNGC 3 cut(s) 10, 149, 631
BstSCI CCNGG 1 cut(s) 282
BstSFI CTRYAG 1 cut(s) 129
BstSLI GKGCMC 1 cut(s) 220
BstX2I RGATCY 2 cut(s) 95, 134
BstYI RGATCY 2 cut(s) 95, 134
BtsCI GGATG 1 cut(s) 616
Cac8I GCNNGC 1 cut(s) 632
CfoI GCGC 1 cut(s) 70
Cfr10I RCCGGY 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 263
CseI GACGC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 652
CviJI RGCY 9 cut(s) 29, 81, 107, 152, 439, 491, 565, 595, 625
CviKI_1 RGCY 9 cut(s) 29, 81, 107, 152, 439, 491, 565, 595, 625
CviQI GTAC 1 cut(s) 652
DdeI CTNAG 3 cut(s) 210, 552, 566
DpnI GATC 3 cut(s) 97, 136, 503
DpnII GATC 3 cut(s) 95, 134, 501
DrdI GACNNNNNNGTC 1 cut(s) 124
DseDI GACNNNNNNGTC 1 cut(s) 124
Eam1104I CTCTTC 2 cut(s) 91, 585
EarI CTCTTC 2 cut(s) 91, 585
EciI GGCGGA 1 cut(s) 56
Eco130I CCWWGG 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 263
Eco88I CYCGRG 2 cut(s) 14, 30
EcoO109I RGGNCCY 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 221
FaiI YATR 6 cut(s) 104, 340, 374, 411, 485, 661
FalI AAGNNNNNCTT 2 cut(s) 530, 562
FauI CCCGC 1 cut(s) 600
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 1 cut(s) 623
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 222
FspI TGCGCA 1 cut(s) 69
GlaI GCGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 80
HapII CCGG 5 cut(s) 8, 93, 241, 283, 587
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 70
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HincII GTYRAC 2 cut(s) 183, 232
HindII GTYRAC 2 cut(s) 183, 232
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 4 cut(s) 179, 401, 556, 583
HpaII CCGG 5 cut(s) 8, 93, 241, 283, 587
HphI GGTGA 2 cut(s) 230, 304
Hpy166II GTNNAC 4 cut(s) 183, 218, 232, 295
Hpy188I TCNGA 4 cut(s) 114, 211, 334, 553
Hpy188III TCNNGA 3 cut(s) 16, 32, 587
Hpy8I GTNNAC 4 cut(s) 183, 218, 232, 295
Hpy99I CGWCG 3 cut(s) 118, 121, 124
HpyAV CCTTC 1 cut(s) 391
HpyCH4III ACNGT 3 cut(s) 124, 207, 449
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 5 cut(s) 131, 218, 342, 601, 630
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 149, 631
HpyF3I CTNAG 3 cut(s) 210, 552, 566
HpySE526I ACGT 1 cut(s) 195
HspAI GCGC 1 cut(s) 68
Kpn2I TCCGGA 1 cut(s) 586
Kzo9I GATC 3 cut(s) 95, 134, 501
LguI GCTCTTC 1 cut(s) 585
LmnI GCTCC 3 cut(s) 46, 86, 157
MaeI CTAG 1 cut(s) 222
MaeII ACGT 1 cut(s) 195
MalI GATC 3 cut(s) 97, 136, 503
MboI GATC 3 cut(s) 95, 134, 501
MboII GAAGA 5 cut(s) 78, 262, 406, 445, 602
MflI RGATCY 2 cut(s) 95, 134
MhlI GDGCHC 2 cut(s) 15, 220
MluCI AATT 1 cut(s) 328
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 3 cut(s) 123, 137, 343
MroI TCCGGA 1 cut(s) 586
MseI TTAA 3 cut(s) 302, 477, 495
MspI CCGG 5 cut(s) 8, 93, 241, 283, 587
MspR9I CCNGG 1 cut(s) 284
MwoI GCNNNNNNNGC 3 cut(s) 10, 149, 631
NciI CCSGG 1 cut(s) 284
NdeII GATC 3 cut(s) 95, 134, 501
NlaIV GGNNCC 3 cut(s) 82, 97, 153
NsbI TGCGCA 1 cut(s) 69
PciSI GCTCTTC 1 cut(s) 585
PfeI GAWTC 3 cut(s) 401, 556, 583
PflFI GACNNNGTC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
Ppu21I YACGTR 1 cut(s) 196
PpuMI RGGWCCY 1 cut(s) 263
Psp5II RGGWCCY 1 cut(s) 263
PspN4I GGNNCC 3 cut(s) 82, 97, 153
PspPI GGNCC 1 cut(s) 263
PspPPI RGGWCCY 1 cut(s) 263
PstI CTGCAG 1 cut(s) 133
PsuI RGATCY 2 cut(s) 95, 134
PsyI GACNNNGTC 1 cut(s) 124
RsaI GTAC 1 cut(s) 653
RsaNI GTAC 1 cut(s) 652
SapI GCTCTTC 1 cut(s) 585
SaqAI TTAA 3 cut(s) 302, 477, 495
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 3 cut(s) 95, 134, 501
Sau96I GGNCC 1 cut(s) 263
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 284
SduI GDGCHC 2 cut(s) 15, 220
SfcI CTRYAG 1 cut(s) 129
SgrAI CRCCGGYG 1 cut(s) 7
SinI GGWCC 1 cut(s) 263
Sse9I AATT 1 cut(s) 328
SsiI CCGC 4 cut(s) 5, 41, 258, 607
SspMI CTAG 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 282
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 3 cut(s) 124, 207, 449
TaiI ACGT 1 cut(s) 198
TasI AATT 1 cut(s) 328
TatI WGTACW 1 cut(s) 651
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 3 cut(s) 401, 556, 583
Tru1I TTAA 3 cut(s) 302, 477, 495
Tru9I TTAA 3 cut(s) 302, 477, 495
TspDTI ATGAA 2 cut(s) 135, 407
TspGWI ACGGA 2 cut(s) 391, 518
Tth111I GACNNNGTC 1 cut(s) 124
VneI GTGCAC 1 cut(s) 216
VpaK11BI GGWCC 1 cut(s) 263
XmaJI CCTAGG 1 cut(s) 221
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.