FvH4_1g29050

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000776
Physical Location & Seq
Forward (+)
21493906 .. 21495586
1681 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29050.t1

Sequence Viewer

Length: 864 bp
ATGAACCAACCAACTTGGTGGGAGCTGAAGGAAGAGGAGAGGCTGAAGCTATGTACTGGACTATCGATTTGCTATGAAATCGAATACAACCAAAAGATGTATGACTGGTTAATGAAGGTGGCGAACAAGGCATACACCTCTTGGAAGGGTAAGCTCCACAAGTTTTTTAAGCATTACAAAGGGGAAAAGGCTCCAAAAGAGTTTGTGCAAGGAGGAAGGATGGATGAGTGGAATTGGCTTAAGCAACACTTCTTGTCACCTCAGTTTCAGAAACTCTCAGCTGCAAACTCGGCAAACCGAGACAAATTAACCATGCATCACCACGCCGGTTGTACACCTTTCATATACAATGCAGAGAAACTTAGGCGTGAGGGTGAATCATTATACCTTATCAACGGTTTTGAGGTGGTGTATGACGCCCCACATAACGAGATTGCAGCCGAAAAAGCCAATGATATGAGACAGAAAATCCTAACAATGCTAAGCGAACAACAGCCGGACACTCCAGAGGATGAGCTCCTTCAACAAGTAGACCTCCAATCTCAGCTTGACGCATTTCAGAAGGTCCTTAGGACCAGGGGGGGGGGAATAAAGGGGCTTGGGAGAGTTGAAATTCTGGGCAAGGGAAAAGCAGCAAGGCGTTCTCGTCCCAATGATATAGTTCTTGAGGAGGTTCGGGAGCATGCCCGACAAGCCCAAGAGGAGGCACGGCATGCTCAGGAGGAGGCACAACAAGCCCGGGAGCAGGCCAAAGTAGCCCAAGAGAAGATCCTTGATTATGAGTGCCGCATACAAATGTTGGAGAAGTTTGTGCAGTCGCAGCCGAGCGGACAAGAAGGCCAACATCTTGAGGTTGATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

288

Amino Acids

33.41

Weight (kDa)

6.57

Isoelectric Point (pI)

54.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 75 - 202 9.9e-06 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 828
AccI GTMKAC 1 cut(s) 531
AciI CCGC 2 cut(s) 787, 828
AclWI GGATC 1 cut(s) 763
AcsI RAATTY 1 cut(s) 612
AcuI CTGAAG 2 cut(s) 47, 65
AcyI GRCGYC 1 cut(s) 417
AfaI GTAC 2 cut(s) 55, 334
AfiI CCNNNNNNNGG 3 cut(s) 582, 703, 745
AflII CTTAAG 1 cut(s) 239
AgsI TTSAA 2 cut(s) 524, 611
AjnI CCWGG 1 cut(s) 575
AluBI AGCT 6 cut(s) 25, 49, 154, 281, 517, 547
AluI AGCT 6 cut(s) 25, 49, 154, 281, 517, 547
Alw21I GWGCWC 1 cut(s) 519
Alw26I GTCTC 2 cut(s) 294, 454
AlwI GGATC 1 cut(s) 763
Ama87I CYCGRG 1 cut(s) 738
AoxI GGCC 2 cut(s) 747, 838
ApeKI GCWGC 4 cut(s) 281, 437, 632, 820
ApoI RAATTY 1 cut(s) 612
ArsI GACNNNNNNTTYG 2 cut(s) 51, 83
AspS9I GGNCC 2 cut(s) 565, 573
AsuC2I CCSGG 2 cut(s) 739, 740
AsuHPI GGTGA 3 cut(s) 249, 311, 386
AvaI CYCGRG 1 cut(s) 738
AvaII GGWCC 2 cut(s) 565, 573
AxyI CCTNAGG 1 cut(s) 569
BanII GRGCYC 1 cut(s) 519
Bbv12I GWGCWC 1 cut(s) 519
BbvI GCAGC 4 cut(s) 268, 449, 644, 832
BccI CCATC 1 cut(s) 214
BceAI ACGGC 1 cut(s) 725
BciT130I CCWGG 1 cut(s) 577
BcnI CCSGG 2 cut(s) 739, 740
BcoDI GTCTC 2 cut(s) 294, 454
BfrI CTTAAG 1 cut(s) 239
BisI GCNGC 5 cut(s) 282, 438, 633, 787, 821
BlpI GCTNAGC 1 cut(s) 482
BlsI GCNGC 5 cut(s) 283, 439, 634, 788, 822
Bme1390I CCNGG 3 cut(s) 577, 739, 740
Bme18I GGWCC 2 cut(s) 565, 573
BmeT110I CYCGRG 1 cut(s) 738
BmgT120I GGNCC 2 cut(s) 565, 573
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 3 cut(s) 577, 739, 740
BmsI GCATC 2 cut(s) 325, 847
BpmI CTGGAG 1 cut(s) 489
Bpu10I CCTNAGC 1 cut(s) 717
Bpu1102I GCTNAGC 1 cut(s) 482
BpuEI CTTGAG 1 cut(s) 686
BpuMI CCSGG 2 cut(s) 739, 740
Bsa29I ATCGAT 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 417
BsaJI CCNNGG 2 cut(s) 576, 738
Bsc4I CCNNNNNNNGG 3 cut(s) 582, 703, 745
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 2 cut(s) 61, 110
Bse21I CCTNAGG 1 cut(s) 569
BseBI CCWGG 1 cut(s) 577
BseCI ATCGAT 1 cut(s) 65
BseDI CCNNGG 2 cut(s) 576, 738
BseGI GGATG 3 cut(s) 225, 229, 517
BseLI CCNNNNNNNGG 3 cut(s) 582, 703, 745
BseMII CTCAG 4 cut(s) 275, 291, 557, 731
BseNI ACTGG 2 cut(s) 61, 110
BseRI GAGGAG 4 cut(s) 50, 683, 716, 737
BseXI GCAGC 4 cut(s) 268, 449, 644, 832
BsgI GTGCAG 1 cut(s) 833
BshFI GGCC 2 cut(s) 749, 840
BshVI ATCGAT 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 519
BsiHKCI CYCGRG 1 cut(s) 738
BsiSI CCGG 3 cut(s) 327, 497, 739
BslFI GGGAC 1 cut(s) 633
BslI CCNNNNNNNGG 3 cut(s) 582, 703, 745
BsmAI GTCTC 2 cut(s) 294, 454
BsmFI GGGAC 1 cut(s) 633
BsnI GGCC 2 cut(s) 749, 840
BsoBI CYCGRG 1 cut(s) 738
Bsp1286I GDGCHC 1 cut(s) 519
Bsp1407I TGTACA 1 cut(s) 332
Bsp143I GATC 1 cut(s) 768
Bsp1720I GCTNAGC 1 cut(s) 482
BspACI CCGC 2 cut(s) 787, 828
BspANI GGCC 2 cut(s) 749, 840
BspCNI CTCAG 4 cut(s) 274, 290, 556, 730
BspDI ATCGAT 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 192
BspPI GGATC 1 cut(s) 763
BspTI CTTAAG 1 cut(s) 239
BsrBI CCGCTC 1 cut(s) 828
BsrFI RCCGGY 1 cut(s) 326
BsrGI TGTACA 1 cut(s) 332
BsrI ACTGG 2 cut(s) 61, 110
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 2 cut(s) 576, 738
BssMI GATC 1 cut(s) 768
BssNI GRCGYC 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 577
Bst4CI ACNGT 1 cut(s) 398
Bst6I CTCTTC 1 cut(s) 27
BstACI GRCGYC 1 cut(s) 417
BstAFI CTTAAG 1 cut(s) 239
BstAPI GCANNNNNTGC 1 cut(s) 713
BstAUI TGTACA 1 cut(s) 332
BstC8I GCNNGC 3 cut(s) 684, 714, 747
BstDEI CTNAG 7 cut(s) 261, 277, 362, 482, 543, 569, 717
BstF5I GGATG 3 cut(s) 225, 229, 517
BstKTI GATC 1 cut(s) 771
BstMAI GTCTC 2 cut(s) 294, 454
BstMBI GATC 1 cut(s) 768
BstMWI GCNNNNNNNGC 8 cut(s) 128, 290, 446, 692, 713, 734, 755, 820
BstNI CCWGG 1 cut(s) 577
BstNSI RCATGY 2 cut(s) 686, 716
BstSCI CCNGG 3 cut(s) 575, 737, 738
BstV1I GCAGC 4 cut(s) 268, 449, 644, 832
BstX2I RGATCY 1 cut(s) 768
BstXI CCANNNNNNTGG 1 cut(s) 18
BstYI RGATCY 1 cut(s) 768
Bsu15I ATCGAT 1 cut(s) 65
Bsu36I CCTNAGG 1 cut(s) 569
BsuRI GGCC 2 cut(s) 749, 840
BsuTUI ATCGAT 1 cut(s) 65
BtsCI GGATG 3 cut(s) 225, 229, 517
Cac8I GCNNGC 3 cut(s) 684, 714, 747
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 2 cut(s) 565, 573
Cfr9I CCCGGG 1 cut(s) 738
ClaI ATCGAT 1 cut(s) 65
CseI GACGC 2 cut(s) 425, 560
Csp6I GTAC 2 cut(s) 54, 333
CspCI CAANNNNNGTGG 2 cut(s) 311, 346
CviAII CATG 3 cut(s) 313, 683, 713
CviQI GTAC 2 cut(s) 54, 333
DdeI CTNAG 7 cut(s) 261, 277, 362, 482, 543, 569, 717
DpnI GATC 1 cut(s) 770
DpnII GATC 1 cut(s) 768
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Ecl136II GAGCTC 1 cut(s) 517
Eco24I GRGCYC 1 cut(s) 519
Eco47I GGWCC 2 cut(s) 565, 573
Eco53kI GAGCTC 1 cut(s) 517
Eco57I CTGAAG 2 cut(s) 47, 65
Eco81I CCTNAGG 1 cut(s) 569
Eco88I CYCGRG 1 cut(s) 738
EcoICRI GAGCTC 1 cut(s) 517
EcoO109I RGGNCCY 1 cut(s) 565
EcoRII CCWGG 1 cut(s) 575
EcoT22I ATGCAT 1 cut(s) 318
EcoT38I GRGCYC 1 cut(s) 519
FaeI CATG 3 cut(s) 316, 686, 716
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FaqI GGGAC 1 cut(s) 633
FatI CATG 3 cut(s) 312, 682, 712
FblI GTMKAC 1 cut(s) 531
Fnu4HI GCNGC 5 cut(s) 282, 438, 633, 787, 821
FokI GGATG 3 cut(s) 232, 236, 524
FriOI GRGCYC 1 cut(s) 519
Fsp4HI GCNGC 5 cut(s) 282, 438, 633, 787, 821
GluI GCNGC 5 cut(s) 282, 438, 633, 787, 821
GsuI CTGGAG 1 cut(s) 489
HaeIII GGCC 2 cut(s) 749, 840
HapII CCGG 3 cut(s) 327, 497, 739
HgaI GACGC 2 cut(s) 425, 560
Hin1I GRCGYC 1 cut(s) 417
Hin1II CATG 3 cut(s) 316, 686, 716
HinfI GANTC 1 cut(s) 377
HpaII CCGG 3 cut(s) 327, 497, 739
HphI GGTGA 3 cut(s) 249, 311, 386
Hpy166II GTNNAC 2 cut(s) 335, 532
Hpy188I TCNGA 2 cut(s) 270, 561
Hpy188III TCNNGA 5 cut(s) 506, 665, 677, 719, 848
Hpy8I GTNNAC 2 cut(s) 335, 532
HpyAV CCTTC 7 cut(s) 22, 109, 139, 210, 530, 556, 830
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4V TGCA 6 cut(s) 208, 284, 316, 353, 437, 814
HpyF10VI GCNNNNNNNGC 8 cut(s) 128, 290, 446, 692, 713, 734, 755, 820
HpyF3I CTNAG 7 cut(s) 261, 277, 362, 482, 543, 569, 717
Hsp92I GRCGYC 1 cut(s) 417
Hsp92II CATG 3 cut(s) 316, 686, 716
Kzo9I GATC 1 cut(s) 768
LmnI GCTCC 6 cut(s) 22, 159, 196, 522, 679, 742
Lsp1109I GCAGC 4 cut(s) 268, 449, 644, 832
LweI GCATC 2 cut(s) 325, 847
MaeIII GTNAC 1 cut(s) 255
MalI GATC 1 cut(s) 770
MbiI CCGCTC 1 cut(s) 828
MboI GATC 1 cut(s) 768
MboII GAAGA 2 cut(s) 44, 778
MflI RGATCY 1 cut(s) 768
MhlI GDGCHC 1 cut(s) 519
MluCI AATT 3 cut(s) 232, 305, 612
MmeI TCCRAC 1 cut(s) 780
Mph1103I ATGCAT 1 cut(s) 318
MseI TTAA 5 cut(s) 110, 168, 240, 308, 862
MslI CAYNNNNRTG 1 cut(s) 794
MspA1I CMGCKG 1 cut(s) 281
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 3 cut(s) 327, 497, 739
MspR9I CCNGG 3 cut(s) 577, 739, 740
MvaI CCWGG 1 cut(s) 577
MwoI GCNNNNNNNGC 8 cut(s) 128, 290, 446, 692, 713, 734, 755, 820
NciI CCSGG 2 cut(s) 739, 740
NdeII GATC 1 cut(s) 768
NlaIII CATG 3 cut(s) 316, 686, 716
NlaIV GGNNCC 1 cut(s) 192
NmeAIII GCCGAG 2 cut(s) 269, 849
NmuCI GTSAC 1 cut(s) 255
NsiI ATGCAT 1 cut(s) 318
NspI RCATGY 2 cut(s) 686, 716
PaeI GCATGC 2 cut(s) 686, 716
PfeI GAWTC 1 cut(s) 377
PkrI GCNGC 5 cut(s) 283, 439, 634, 788, 822
PpuMI RGGWCCY 1 cut(s) 565
Psp124BI GAGCTC 1 cut(s) 519
Psp5II RGGWCCY 1 cut(s) 565
Psp6I CCWGG 1 cut(s) 575
PspGI CCWGG 1 cut(s) 575
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 2 cut(s) 565, 573
PspPPI RGGWCCY 1 cut(s) 565
PsrI GAACNNNNNNTAC 2 cut(s) 116, 148
PsuI RGATCY 1 cut(s) 768
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 2 cut(s) 55, 334
RsaNI GTAC 2 cut(s) 54, 333
RseI CAYNNNNRTG 1 cut(s) 794
SacI GAGCTC 1 cut(s) 519
SaqAI TTAA 5 cut(s) 110, 168, 240, 308, 862
SatI GCNGC 5 cut(s) 282, 438, 633, 787, 821
Sau3AI GATC 1 cut(s) 768
Sau96I GGNCC 2 cut(s) 565, 573
ScrFI CCNGG 3 cut(s) 577, 739, 740
SduI GDGCHC 1 cut(s) 519
SfaNI GCATC 2 cut(s) 325, 847
SinI GGWCC 2 cut(s) 565, 573
SmaI CCCGGG 1 cut(s) 740
SmiMI CAYNNNNRTG 1 cut(s) 794
SmlI CTYRAG 3 cut(s) 239, 665, 848
SmoI CTYRAG 3 cut(s) 239, 665, 848
SphI GCATGC 2 cut(s) 686, 716
Sse9I AATT 3 cut(s) 232, 305, 612
SsiI CCGC 2 cut(s) 787, 828
SstI GAGCTC 1 cut(s) 519
StyD4I CCNGG 3 cut(s) 575, 737, 738
TaaI ACNGT 1 cut(s) 398
TaqI TCGA 2 cut(s) 65, 81
TasI AATT 3 cut(s) 232, 305, 612
TatI WGTACW 2 cut(s) 53, 332
TauI GCSGC 1 cut(s) 789
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 5 cut(s) 110, 168, 240, 308, 862
Tru9I TTAA 5 cut(s) 110, 168, 240, 308, 862
TseFI GTSAC 1 cut(s) 255
TseI GCWGC 4 cut(s) 281, 437, 632, 820
Tsp45I GTSAC 1 cut(s) 255
TspDTI ATGAA 4 cut(s) 17, 90, 128, 331
TspMI CCCGGG 1 cut(s) 738
Vha464I CTTAAG 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 565, 573
XapI RAATTY 1 cut(s) 612
XceI RCATGY 2 cut(s) 686, 716
XmaI CCCGGG 1 cut(s) 738
XmiI GTMKAC 1 cut(s) 531
Zsp2I ATGCAT 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.