FvH4_2g17540

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000776
Physical Location & Seq
Forward (+)
15079907 .. 15094183
14277 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17540.t1

Sequence Viewer

Length: 1011 bp
ATGAGATCACACAAAGGTTTTGTTCGGGAGGGGCATAGTGGGTTGGTGTCAGCGAGAGCCAAGGTTGGATGGCAGAAAGGGAGTTTGCAGGATAAGGACGAATTTGATCTTGTCGGAGGTGAAGATGGCCGGCATGATGGGGAAAGCGATGGTGGGATGAAGGATCGGCCTGAAGTTGCTCAGTGTGGCGATGCCACTGGTGCTCCTCCACTGGATGAGGATGAGCTGGACAATGTGGCCCCAGAAGCTCCACTGAAGTCCACCGGACCTCCCCCAAAACGCCGACGAGGGTTCGGCAACCTGGAAAAAGTCAAGCGTATTGTGAAGTGCACCGGCGTGATCGAAATTGTGTATGACGACTTTATCAGAGGACCGTCTTCATCAGCAGTGAACAGCCTCCTGGTCAATAGCATTGGTTGCATAATTCGATCCAAAGTCAAGTTGTCGGCCGAAAACTGGGAATGCCTCGGTGACTCTGAGAAGAAGAAGTTGATAGACGGGCTTACGATTGGAAAAGGAACTTTCTCAAGGCACTATAAGAAGTATGGGAGAGAAAGAATTCCGCCAGATTTGATACACAGGCAGGATGAGTGGGACTGGCTTTGCTGGCACTTTGAGTCGCCTGATTTCAAGACCAACCGTGGTAAGAAGGAGTCGGAGCACCACACGGGGCGGCTACCTATCATCTATAAGGTGGTCCACCACAAAGAGAAGGGTGAGGAATTTCCTGTTATCCCAGCTTACACGGAGACGTATGACACAGTCAACGACCCTAAAGCTGCCAAAAATCTTGAAGATAGGAAATCAGGGAATGAGATTGAGAGAAGAGAGATGGAAGCGAAGACTTATCGGAGGCGGTGGGTGACTGAGGCAGAGAACCAGACAGGCGTGCAGGCCGGCAGGCGTTGTCGAGAGGAAGATAGTCACGCCGCGCACAGTCGTCGTCGTCTCATCGAGAGGAAGAGAGGCGCAGTCGAGGAAAAGAGGCATAGTCGAGTGACTCGAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

337

Amino Acids

38.23

Weight (kDa)

8.96

Isoelectric Point (pI)

58.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 932
AciI CCGC 4 cut(s) 563, 673, 856, 930
AclWI GGATC 2 cut(s) 171, 423
AcoI YGGCCR 2 cut(s) 127, 447
AcsI RAATTY 3 cut(s) 101, 558, 722
AcuI CTGAAG 2 cut(s) 192, 275
AfiI CCNNNNNNNGG 1 cut(s) 456
AgsI TTSAA 2 cut(s) 631, 794
AjnI CCWGG 2 cut(s) 300, 399
AleI CACNNNNGTG 1 cut(s) 335
AluBI AGCT 4 cut(s) 226, 248, 740, 779
AluI AGCT 4 cut(s) 226, 248, 740, 779
Alw21I GWGCWC 3 cut(s) 205, 332, 663
Alw26I GTCTC 2 cut(s) 743, 953
Alw44I GTGCAC 1 cut(s) 328
AlwI GGATC 2 cut(s) 171, 423
Ama87I CYCGRG 1 cut(s) 1002
AoxI GGCC 5 cut(s) 127, 167, 237, 447, 894
ApaLI GTGCAC 1 cut(s) 328
ApeKI GCWGC 1 cut(s) 779
ApoI RAATTY 3 cut(s) 101, 558, 722
Asp700I GAANNNNTTC 1 cut(s) 558
AspLEI GCGC 2 cut(s) 934, 971
AspS9I GGNCC 4 cut(s) 238, 266, 371, 697
AsuHPI GGTGA 4 cut(s) 131, 482, 728, 874
AvaI CYCGRG 1 cut(s) 1002
AvaII GGWCC 3 cut(s) 266, 371, 697
BaeGI GKGCMC 1 cut(s) 332
BbsI GAAGAC 2 cut(s) 369, 848
Bbv12I GWGCWC 3 cut(s) 205, 332, 663
BbvI GCAGC 1 cut(s) 766
BccI CCATC 5 cut(s) 63, 119, 131, 143, 826
BcgI CGANNNNNNTGC 2 cut(s) 923, 957
BciT130I CCWGG 2 cut(s) 302, 401
BcoDI GTCTC 2 cut(s) 743, 953
BisI GCNGC 3 cut(s) 674, 780, 930
BlsI GCNGC 3 cut(s) 675, 781, 931
Bme1390I CCNGG 2 cut(s) 302, 401
Bme18I GGWCC 3 cut(s) 266, 371, 697
BmeT110I CYCGRG 1 cut(s) 1002
BmgT120I GGNCC 4 cut(s) 238, 266, 371, 697
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 2 cut(s) 302, 401
BmrI ACTGGG 1 cut(s) 466
BmsI GCATC 1 cut(s) 181
BmuI ACTGGG 1 cut(s) 466
BoxI GACNNNNGTC 1 cut(s) 1004
BpiI GAAGAC 2 cut(s) 369, 848
BpuEI CTTGAG 1 cut(s) 511
BsaJI CCNNGG 3 cut(s) 60, 466, 640
BsaWI WCCGGW 1 cut(s) 263
BsaXI ACNNNNNCTCC 4 cut(s) 187, 217, 253, 283
Bsc4I CCNNNNNNNGG 1 cut(s) 456
Bse118I RCCGGY 3 cut(s) 129, 332, 896
Bse1I ACTGG 4 cut(s) 202, 216, 461, 602
BseBI CCWGG 2 cut(s) 302, 401
BseDI CCNNGG 3 cut(s) 60, 466, 640
BseGI GGATG 5 cut(s) 74, 162, 220, 226, 592
BseLI CCNNNNNNNGG 1 cut(s) 456
BseMII CTCAG 3 cut(s) 194, 468, 858
BseNI ACTGG 4 cut(s) 202, 216, 461, 602
BseRI GAGGAG 1 cut(s) 195
BseSI GKGCMC 1 cut(s) 332
BseX3I CGGCCG 1 cut(s) 447
BseXI GCAGC 1 cut(s) 766
BseYI CCCAGC 1 cut(s) 736
BsgI GTGCAG 1 cut(s) 911
Bsh1236I CGCG 1 cut(s) 932
Bsh1285I CGRYCG 1 cut(s) 450
BshFI GGCC 5 cut(s) 129, 169, 239, 449, 896
BsiEI CGRYCG 1 cut(s) 450
BsiHKAI GWGCWC 3 cut(s) 205, 332, 663
BsiHKCI CYCGRG 1 cut(s) 1002
BsiSI CCGG 4 cut(s) 130, 264, 333, 897
BslFI GGGAC 1 cut(s) 608
BslI CCNNNNNNNGG 1 cut(s) 456
BsmAI GTCTC 2 cut(s) 743, 953
BsmBI CGTCTC 2 cut(s) 743, 953
BsmFI GGGAC 1 cut(s) 608
BsmI GAATGC 1 cut(s) 467
BsnI GGCC 5 cut(s) 129, 169, 239, 449, 896
BsoBI CYCGRG 1 cut(s) 1002
Bsp1286I GDGCHC 3 cut(s) 205, 332, 663
Bsp143I GATC 5 cut(s) 5, 106, 163, 339, 428
BspACI CCGC 4 cut(s) 563, 673, 856, 930
BspANI GGCC 5 cut(s) 129, 169, 239, 449, 896
BspCNI CTCAG 3 cut(s) 193, 469, 859
BspFNI CGCG 1 cut(s) 932
BspLI GGNNCC 1 cut(s) 240
BspPI GGATC 2 cut(s) 171, 423
BsrFI RCCGGY 3 cut(s) 129, 332, 896
BsrI ACTGG 4 cut(s) 202, 216, 461, 602
BssAI RCCGGY 3 cut(s) 129, 332, 896
BssECI CCNNGG 3 cut(s) 60, 466, 640
BssMI GATC 5 cut(s) 5, 106, 163, 339, 428
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 2 cut(s) 302, 401
Bst4CI ACNGT 4 cut(s) 375, 641, 763, 938
Bst6I CTCTTC 2 cut(s) 820, 956
BstAPI GCANNNNNTGC 1 cut(s) 417
BstC8I GCNNGC 6 cut(s) 131, 608, 890, 894, 898, 902
BstDEI CTNAG 3 cut(s) 180, 477, 867
BstDSI CCRYGG 1 cut(s) 640
BstF5I GGATG 5 cut(s) 74, 162, 220, 226, 592
BstFNI CGCG 1 cut(s) 932
BstHHI GCGC 2 cut(s) 934, 971
BstKTI GATC 5 cut(s) 8, 109, 166, 342, 431
BstMAI GTCTC 2 cut(s) 743, 953
BstMBI GATC 5 cut(s) 5, 106, 163, 339, 428
BstMCI CGRYCG 1 cut(s) 450
BstMWI GCNNNNNNNGC 4 cut(s) 200, 245, 417, 607
BstNI CCWGG 2 cut(s) 302, 401
BstPAI GACNNNNGTC 1 cut(s) 1004
BstSCI CCNGG 2 cut(s) 300, 399
BstSLI GKGCMC 1 cut(s) 332
BstUI CGCG 1 cut(s) 932
BstV1I GCAGC 1 cut(s) 766
BstV2I GAAGAC 2 cut(s) 369, 848
BstZI CGGCCG 1 cut(s) 447
BsuRI GGCC 5 cut(s) 129, 169, 239, 449, 896
BtgI CCRYGG 1 cut(s) 640
BtgZI GCGATG 2 cut(s) 162, 204
BtsCI GGATG 5 cut(s) 74, 162, 220, 226, 592
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 5 cut(s) 188, 195, 209, 251, 393
Cac8I GCNNGC 6 cut(s) 131, 608, 890, 894, 898, 902
CfoI GCGC 2 cut(s) 934, 971
Cfr10I RCCGGY 3 cut(s) 129, 332, 896
Cfr13I GGNCC 4 cut(s) 238, 266, 371, 697
CviAII CATG 1 cut(s) 134
DdeI CTNAG 3 cut(s) 180, 477, 867
DpnI GATC 5 cut(s) 7, 108, 165, 341, 430
DpnII GATC 5 cut(s) 5, 106, 163, 339, 428
EaeI YGGCCR 2 cut(s) 127, 447
EagI CGGCCG 1 cut(s) 447
Eam1104I CTCTTC 2 cut(s) 820, 956
EarI CTCTTC 2 cut(s) 820, 956
EciI GGCGGA 1 cut(s) 552
EclXI CGGCCG 1 cut(s) 447
Eco130I CCWWGG 1 cut(s) 60
Eco47I GGWCC 3 cut(s) 266, 371, 697
Eco52I CGGCCG 1 cut(s) 447
Eco57I CTGAAG 2 cut(s) 192, 275
Eco88I CYCGRG 1 cut(s) 1002
EcoRI GAATTC 1 cut(s) 558
EcoRII CCWGG 2 cut(s) 300, 399
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
Esp3I CGTCTC 2 cut(s) 743, 953
FaeI CATG 1 cut(s) 137
FaiI YATR 9 cut(s) 36, 135, 354, 422, 537, 546, 690, 756, 990
FaqI GGGAC 1 cut(s) 608
FatI CATG 1 cut(s) 133
Fnu4HI GCNGC 3 cut(s) 674, 780, 930
FokI GGATG 5 cut(s) 81, 169, 227, 233, 599
Fsp4HI GCNGC 3 cut(s) 674, 780, 930
GlaI GCGC 2 cut(s) 933, 970
GluI GCNGC 3 cut(s) 674, 780, 930
GsaI CCCAGC 1 cut(s) 740
HaeIII GGCC 5 cut(s) 129, 169, 239, 449, 896
HapII CCGG 4 cut(s) 130, 264, 333, 897
HhaI GCGC 2 cut(s) 934, 971
Hin1II CATG 1 cut(s) 137
Hin6I GCGC 2 cut(s) 932, 969
HinP1I GCGC 2 cut(s) 932, 969
HincII GTYRAC 1 cut(s) 766
HindII GTYRAC 1 cut(s) 766
HinfI GANTC 5 cut(s) 473, 617, 653, 1000, 1005
HpaII CCGG 4 cut(s) 130, 264, 333, 897
HphI GGTGA 4 cut(s) 131, 482, 728, 874
Hpy166II GTNNAC 5 cut(s) 261, 330, 391, 700, 766
Hpy188I TCNGA 6 cut(s) 116, 368, 478, 658, 852, 1010
Hpy188III TCNNGA 5 cut(s) 26, 631, 791, 911, 955
Hpy8I GTNNAC 5 cut(s) 261, 330, 391, 700, 766
Hpy99I CGWCG 3 cut(s) 288, 945, 948
HpyAV CCTTC 3 cut(s) 154, 643, 706
HpyCH4III ACNGT 4 cut(s) 375, 641, 763, 938
HpyCH4IV ACGT 1 cut(s) 752
HpyCH4V TGCA 4 cut(s) 88, 330, 420, 892
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 245, 417, 607
HpyF3I CTNAG 3 cut(s) 180, 477, 867
HpySE526I ACGT 1 cut(s) 752
Hsp92II CATG 1 cut(s) 137
HspAI GCGC 2 cut(s) 932, 969
KroI GCCGGC 2 cut(s) 129, 896
KroNI GCCGGC 2 cut(s) 131, 898
Kzo9I GATC 5 cut(s) 5, 106, 163, 339, 428
LmnI GCTCC 3 cut(s) 208, 253, 658
Lsp1109I GCAGC 1 cut(s) 766
LweI GCATC 1 cut(s) 181
MaeII ACGT 1 cut(s) 752
MaeIII GTNAC 4 cut(s) 470, 862, 923, 997
MalI GATC 5 cut(s) 7, 108, 165, 341, 430
MboI GATC 5 cut(s) 5, 106, 163, 339, 428
MboII GAAGA 9 cut(s) 134, 369, 493, 496, 806, 837, 853, 929, 973
MhlI GDGCHC 3 cut(s) 205, 332, 663
MluCI AATT 5 cut(s) 101, 345, 423, 558, 722
MlyI GAGTC 4 cut(s) 467, 626, 662, 994
MmeI TCCRAC 3 cut(s) 46, 94, 636
MroNI GCCGGC 2 cut(s) 129, 896
MroXI GAANNNNTTC 1 cut(s) 558
MslI CAYNNNNRTG 1 cut(s) 335
MspI CCGG 4 cut(s) 130, 264, 333, 897
MspR9I CCNGG 2 cut(s) 302, 401
Mva1269I GAATGC 1 cut(s) 467
MvaI CCWGG 2 cut(s) 302, 401
MvnI CGCG 1 cut(s) 932
MwoI GCNNNNNNNGC 4 cut(s) 200, 245, 417, 607
NaeI GCCGGC 2 cut(s) 131, 898
NdeII GATC 5 cut(s) 5, 106, 163, 339, 428
NgoMIV GCCGGC 2 cut(s) 129, 896
NlaIII CATG 1 cut(s) 137
NlaIV GGNNCC 1 cut(s) 240
NmuCI GTSAC 4 cut(s) 470, 862, 923, 997
OliI CACNNNNGTG 1 cut(s) 335
PaeR7I CTCGAG 1 cut(s) 1002
PcsI WCGNNNNNNNCGW 1 cut(s) 1000
PctI GAATGC 1 cut(s) 467
PdiI GCCGGC 2 cut(s) 131, 898
PdmI GAANNNNTTC 1 cut(s) 558
PflFI GACNNNGTC 1 cut(s) 761
PkrI GCNGC 3 cut(s) 675, 781, 931
PleI GAGTC 4 cut(s) 467, 625, 661, 994
PpsI GAGTC 4 cut(s) 467, 625, 661, 994
PshAI GACNNNNGTC 1 cut(s) 1004
Psp6I CCWGG 2 cut(s) 300, 399
PspFI CCCAGC 1 cut(s) 736
PspGI CCWGG 2 cut(s) 300, 399
PspN4I GGNNCC 1 cut(s) 240
PspPI GGNCC 4 cut(s) 238, 266, 371, 697
PspXI VCTCGAGB 1 cut(s) 1002
PsyI GACNNNGTC 1 cut(s) 761
RseI CAYNNNNRTG 1 cut(s) 335
SatI GCNGC 3 cut(s) 674, 780, 930
Sau3AI GATC 5 cut(s) 5, 106, 163, 339, 428
Sau96I GGNCC 4 cut(s) 238, 266, 371, 697
SchI GAGTC 4 cut(s) 467, 626, 662, 994
ScrFI CCNGG 2 cut(s) 302, 401
SduI GDGCHC 3 cut(s) 205, 332, 663
SfaNI GCATC 1 cut(s) 181
Sfr274I CTCGAG 1 cut(s) 1002
SgrAI CRCCGGYG 1 cut(s) 332
SinI GGWCC 3 cut(s) 266, 371, 697
SlaI CTCGAG 1 cut(s) 1002
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 2 cut(s) 526, 1002
SmoI CTYRAG 2 cut(s) 526, 1002
Sse9I AATT 5 cut(s) 101, 345, 423, 558, 722
SsiI CCGC 4 cut(s) 563, 673, 856, 930
StyD4I CCNGG 2 cut(s) 300, 399
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 4 cut(s) 375, 641, 763, 938
TaiI ACGT 1 cut(s) 755
TaqI TCGA 7 cut(s) 342, 427, 910, 954, 975, 994, 1003
TasI AATT 5 cut(s) 101, 345, 423, 558, 722
TauI GCSGC 2 cut(s) 676, 932
TscAI CASTG 5 cut(s) 188, 202, 216, 258, 393
TseFI GTSAC 4 cut(s) 470, 862, 923, 997
TseI GCWGC 1 cut(s) 779
Tsp45I GTSAC 4 cut(s) 470, 862, 923, 997
TspDTI ATGAA 2 cut(s) 173, 369
TspGWI ACGGA 1 cut(s) 761
TspRI CASTG 5 cut(s) 188, 202, 216, 258, 393
Tth111I GACNNNGTC 1 cut(s) 761
VneI GTGCAC 1 cut(s) 328
VpaK11BI GGWCC 3 cut(s) 266, 371, 697
XapI RAATTY 3 cut(s) 101, 558, 722
XhoI CTCGAG 1 cut(s) 1002
XmnI GAANNNNTTC 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.