FvH4_5g31660

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000776
Physical Location & Seq
Forward (+)
22799549 .. 22802537
2989 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31660.t1

Sequence Viewer

Length: 1002 bp
ATGCCGGTGCTCGGGAAAAGGAAAGCTCGGGAGGAGGCGGAGGAGCGTTTGCGACTGGAGTGTGCGCAACAATACGGCTCCTCTTCTGCCGGATCCAACACAGCCACTCCGACGACGACGGCGCCATCCCTTGCTGAATCGGCTCCCTCTCTAACCGACGACGATGACGAGTCAGTGACCCGAGTATCAGAAACACCGTCTGAGGGTGCACCCCGGGTTGTCAGCGCTCGCCGGAAACCGAAGAAAAGCGGAGGACCTCCCCAGAAAGGCAACCGGGGTGTAGTGAACTGCTCAAAGGTGTCTGATATTGTGAAAAGCACGGGGAAGAAGATTGACTTGGACTTTGATTGGGAGTTTATTGATGGACCTCGTAATTCTGATGTATGCAGCCTTTTTGTCAATACTGTTGGAAGCATCATACGCAAAAGAGTGGCAATGAAGAAGGAATCGTGGTATGATTTAGACAAGGAGGAAAGGAAGAAGCTTTTTGACGGTCTCACTTGTTTTTTTATCATTGATTTTAATGATATAAAAGCCATTAAATGGATCAATAAAAGGGCGGCAAGTGTATTCCGTGAATGGAAGCATGACTTGTCTGAGATTCATAAGCTCGGGGGGAGAGATATGATTCCGGAAGAGCTTTTGCACAGGCGGGATGAGTGGGAGTGGCTTTGCACTCATTTTGATTCGGATAAGTACAAGATATCAATTCATGACTTAGAAGCCACATTTAGGTTTGTACCTGAAAATAGACGATCGGTTGCCAACTCCAGCAACCGTGGTAAGAAGGAGTTGGAGCACCGCTCAGGGAGGAAACCTATCATTTGCCGGGTGGCCGAGCTAAGGGATAAGGGTGCTTCATTACCGGTGGTTGACGTGTACCCGGTGACATACGACATCAACCAGCCTAAAGCTGCTGAGCATTATGAAAAGTTGAAGGAACAAGGTGCTATTGCTAAGACTTTGCAAAGCACTCAACACCCGGACATCCCACCGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

334

Amino Acids

37.69

Weight (kDa)

8.59

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 66
AccB1I GGYRCC 1 cut(s) 121
AccB7I CCANNNNNTGG 1 cut(s) 543
AccBSI CCGCTC 1 cut(s) 804
AccIII TCCGGA 1 cut(s) 631
AciI CCGC 5 cut(s) 38, 249, 560, 652, 802
AclWI GGATC 3 cut(s) 87, 100, 554
AcoI YGGCCR 1 cut(s) 834
AcyI GRCGYC 1 cut(s) 122
AfaI GTAC 3 cut(s) 698, 741, 881
AfeI AGCGCT 1 cut(s) 226
AfiI CCNNNNNNNGG 6 cut(s) 11, 203, 266, 543, 732, 843
AflIII ACRYGT 1 cut(s) 876
AgeI ACCGGT 1 cut(s) 865
AgsI TTSAA 1 cut(s) 937
AjiI CACGTC 1 cut(s) 877
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AluBI AGCT 6 cut(s) 26, 484, 610, 640, 841, 914
AluI AGCT 6 cut(s) 26, 484, 610, 640, 841, 914
Alw21I GWGCWC 3 cut(s) 12, 211, 801
Alw26I GTCTC 1 cut(s) 500
Alw44I GTGCAC 1 cut(s) 207
AlwI GGATC 3 cut(s) 87, 100, 554
Ama87I CYCGRG 5 cut(s) 11, 27, 180, 213, 611
Aor13HI TCCGGA 1 cut(s) 631
Aor51HI AGCGCT 1 cut(s) 226
AoxI GGCC 1 cut(s) 834
ApaLI GTGCAC 1 cut(s) 207
ApeKI GCWGC 2 cut(s) 387, 914
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AsiGI ACCGGT 1 cut(s) 865
AspLEI GCGC 3 cut(s) 67, 124, 227
AspS9I GGNCC 2 cut(s) 254, 365
AsuC2I CCSGG 6 cut(s) 214, 215, 275, 830, 884, 983
AsuHPI GGTGA 1 cut(s) 898
AvaI CYCGRG 5 cut(s) 11, 27, 180, 213, 611
AvaII GGWCC 2 cut(s) 254, 365
BaeGI GKGCMC 1 cut(s) 211
BaeI ACNNNNGTAYC 2 cut(s) 168, 201
BamHI GGATCC 1 cut(s) 92
BanI GGYRCC 1 cut(s) 121
Bbv12I GWGCWC 3 cut(s) 12, 211, 801
BbvI GCAGC 2 cut(s) 399, 901
BccI CCATC 2 cut(s) 133, 356
BceAI ACGGC 2 cut(s) 91, 135
BcnI CCSGG 6 cut(s) 214, 215, 275, 830, 884, 983
BcoDI GTCTC 1 cut(s) 500
BfoI RGCGCY 2 cut(s) 125, 228
BisI GCNGC 3 cut(s) 388, 561, 915
BlpI GCTNAGC 1 cut(s) 918
BlsI GCNGC 3 cut(s) 389, 562, 916
Bme1390I CCNGG 6 cut(s) 214, 215, 275, 830, 884, 983
Bme18I GGWCC 2 cut(s) 254, 365
BmeT110I CYCGRG 5 cut(s) 11, 27, 180, 213, 611
BmgBI CACGTC 1 cut(s) 877
BmgT120I GGNCC 2 cut(s) 254, 365
BmiI GGNNCC 4 cut(s) 79, 94, 123, 144
BmrFI CCNGG 6 cut(s) 214, 215, 275, 830, 884, 983
BmsI GCATC 1 cut(s) 423
BplI GAGNNNNNCTC 2 cut(s) 788, 820
BpmI CTGGAG 2 cut(s) 77, 754
Bpu10I CCTNAGC 2 cut(s) 805, 842
Bpu1102I GCTNAGC 1 cut(s) 918
BpuMI CCSGG 6 cut(s) 214, 215, 275, 830, 884, 983
BsaHI GRCGYC 1 cut(s) 122
BsaI GGTCTC 1 cut(s) 500
BsaJI CCNNGG 4 cut(s) 212, 213, 274, 778
BsaWI WCCGGW 3 cut(s) 631, 865, 994
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 6 cut(s) 11, 203, 266, 543, 732, 843
Bse118I RCCGGY 2 cut(s) 4, 865
Bse1I ACTGG 1 cut(s) 60
Bse3DI GCAATG 1 cut(s) 441
BseAI TCCGGA 1 cut(s) 631
BseDI CCNNGG 4 cut(s) 212, 213, 274, 778
BseGI GGATG 3 cut(s) 125, 661, 987
BseLI CCNNNNNNNGG 6 cut(s) 11, 203, 266, 543, 732, 843
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 4 cut(s) 192, 588, 819, 909
BseNI ACTGG 1 cut(s) 60
BseRI GAGGAG 3 cut(s) 47, 56, 70
BseSI GKGCMC 1 cut(s) 211
BseXI GCAGC 2 cut(s) 399, 901
Bsh1285I CGRYCG 1 cut(s) 758
BshFI GGCC 1 cut(s) 836
BshNI GGYRCC 1 cut(s) 121
BshTI ACCGGT 1 cut(s) 865
BsiEI CGRYCG 1 cut(s) 758
BsiHKAI GWGCWC 3 cut(s) 12, 211, 801
BsiHKCI CYCGRG 5 cut(s) 11, 27, 180, 213, 611
BslI CCNNNNNNNGG 6 cut(s) 11, 203, 266, 543, 732, 843
BsmAI GTCTC 1 cut(s) 500
BsnI GGCC 1 cut(s) 836
Bso31I GGTCTC 1 cut(s) 500
BsoBI CYCGRG 5 cut(s) 11, 27, 180, 213, 611
Bsp1286I GDGCHC 3 cut(s) 12, 211, 801
Bsp13I TCCGGA 1 cut(s) 631
Bsp143I GATC 3 cut(s) 92, 546, 755
Bsp1720I GCTNAGC 1 cut(s) 918
BspACI CCGC 5 cut(s) 38, 249, 560, 652, 802
BspANI GGCC 1 cut(s) 836
BspCNI CTCAG 4 cut(s) 193, 589, 818, 910
BspEI TCCGGA 1 cut(s) 631
BspHI TCATGA 1 cut(s) 712
BspLI GGNNCC 4 cut(s) 79, 94, 123, 144
BspPI GGATC 3 cut(s) 87, 100, 554
BspQI GCTCTTC 1 cut(s) 630
BspT107I GGYRCC 1 cut(s) 121
BspTNI GGTCTC 1 cut(s) 500
BsrBI CCGCTC 1 cut(s) 804
BsrDI GCAATG 1 cut(s) 441
BsrFI RCCGGY 2 cut(s) 4, 865
BsrI ACTGG 1 cut(s) 60
BssAI RCCGGY 2 cut(s) 4, 865
BssECI CCNNGG 4 cut(s) 212, 213, 274, 778
BssMI GATC 3 cut(s) 92, 546, 755
BssNI GRCGYC 1 cut(s) 122
Bst4CI ACNGT 4 cut(s) 198, 406, 494, 779
Bst6I CTCTTC 2 cut(s) 88, 630
BstACI GRCGYC 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 7 cut(s) 201, 597, 718, 805, 842, 918, 957
BstDSI CCRYGG 1 cut(s) 778
BstF5I GGATG 3 cut(s) 125, 661, 987
BstH2I RGCGCY 2 cut(s) 125, 228
BstHHI GCGC 3 cut(s) 67, 124, 227
BstKTI GATC 3 cut(s) 95, 549, 758
BstMAI GTCTC 1 cut(s) 500
BstMBI GATC 3 cut(s) 92, 546, 755
BstMCI CGRYCG 1 cut(s) 758
BstMWI GCNNNNNNNGC 2 cut(s) 140, 420
BstSCI CCNGG 6 cut(s) 212, 213, 273, 828, 882, 981
BstSLI GKGCMC 1 cut(s) 211
BstV1I GCAGC 2 cut(s) 399, 901
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BsuRI GGCC 1 cut(s) 836
BtgI CCRYGG 1 cut(s) 778
BtrI CACGTC 1 cut(s) 877
BtsCI GGATG 3 cut(s) 125, 661, 987
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 229
CciI TCATGA 1 cut(s) 712
CfoI GCGC 3 cut(s) 67, 124, 227
Cfr10I RCCGGY 2 cut(s) 4, 865
Cfr13I GGNCC 2 cut(s) 254, 365
Cfr9I CCCGGG 1 cut(s) 213
Csp6I GTAC 3 cut(s) 697, 740, 880
CspAI ACCGGT 1 cut(s) 865
CviAII CATG 2 cut(s) 587, 713
CviQI GTAC 3 cut(s) 697, 740, 880
DdeI CTNAG 7 cut(s) 201, 597, 718, 805, 842, 918, 957
DinI GGCGCC 1 cut(s) 123
DpnI GATC 3 cut(s) 94, 548, 757
DpnII GATC 3 cut(s) 92, 546, 755
EaeI YGGCCR 1 cut(s) 834
Eam1104I CTCTTC 2 cut(s) 88, 630
EarI CTCTTC 2 cut(s) 88, 630
EciI GGCGGA 1 cut(s) 53
Eco31I GGTCTC 1 cut(s) 500
Eco32I GATATC 1 cut(s) 705
Eco47I GGWCC 2 cut(s) 254, 365
Eco47III AGCGCT 1 cut(s) 226
Eco88I CYCGRG 5 cut(s) 11, 27, 180, 213, 611
EcoO109I RGGNCCY 1 cut(s) 254
EcoRV GATATC 1 cut(s) 705
EgeI GGCGCC 1 cut(s) 123
EheI GGCGCC 1 cut(s) 123
FaeI CATG 2 cut(s) 590, 716
FalI AAGNNNNNCTT 4 cut(s) 320, 352, 575, 607
FatI CATG 2 cut(s) 586, 712
FauI CCCGC 1 cut(s) 645
Fnu4HI GCNGC 3 cut(s) 388, 561, 915
FokI GGATG 3 cut(s) 112, 668, 974
Fsp4HI GCNGC 3 cut(s) 388, 561, 915
FspI TGCGCA 1 cut(s) 66
GlaI GCGC 3 cut(s) 66, 123, 226
GluI GCNGC 3 cut(s) 388, 561, 915
GsuI CTGGAG 2 cut(s) 77, 754
HaeII RGCGCY 2 cut(s) 125, 228
HaeIII GGCC 1 cut(s) 836
HhaI GCGC 3 cut(s) 67, 124, 227
Hin1I GRCGYC 1 cut(s) 122
Hin1II CATG 2 cut(s) 590, 716
Hin6I GCGC 3 cut(s) 65, 122, 225
HinP1I GCGC 3 cut(s) 65, 122, 225
HincII GTYRAC 1 cut(s) 874
HindII GTYRAC 1 cut(s) 874
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 6 cut(s) 137, 170, 446, 601, 628, 686
HphI GGTGA 1 cut(s) 898
Hpy166II GTNNAC 4 cut(s) 209, 286, 874, 880
Hpy188I TCNGA 7 cut(s) 111, 190, 202, 304, 379, 598, 691
Hpy188III TCNNGA 4 cut(s) 13, 29, 632, 713
Hpy8I GTNNAC 4 cut(s) 209, 286, 874, 880
Hpy99I CGWCG 5 cut(s) 115, 118, 121, 161, 164
HpyAV CCTTC 3 cut(s) 436, 781, 931
HpyCH4III ACNGT 4 cut(s) 198, 406, 494, 779
HpyCH4IV ACGT 1 cut(s) 876
HpyCH4V TGCA 5 cut(s) 209, 387, 646, 675, 967
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 420
HpyF3I CTNAG 7 cut(s) 201, 597, 718, 805, 842, 918, 957
HpySE526I ACGT 1 cut(s) 876
Hsp92I GRCGYC 1 cut(s) 122
Hsp92II CATG 2 cut(s) 590, 716
HspAI GCGC 3 cut(s) 65, 122, 225
KasI GGCGCC 1 cut(s) 121
Kpn2I TCCGGA 1 cut(s) 631
Kzo9I GATC 3 cut(s) 92, 546, 755
LguI GCTCTTC 1 cut(s) 630
LmnI GCTCC 4 cut(s) 43, 83, 148, 796
Lsp1109I GCAGC 2 cut(s) 399, 901
LweI GCATC 1 cut(s) 423
MaeII ACGT 1 cut(s) 876
MaeIII GTNAC 2 cut(s) 175, 886
MalI GATC 3 cut(s) 94, 548, 757
MbiI CCGCTC 1 cut(s) 804
MboI GATC 3 cut(s) 92, 546, 755
MboII GAAGA 7 cut(s) 75, 253, 337, 340, 451, 490, 647
MflI RGATCY 1 cut(s) 92
MhlI GDGCHC 3 cut(s) 12, 211, 801
MluCI AATT 2 cut(s) 373, 708
Mly113I GGCGCC 1 cut(s) 122
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 4 cut(s) 120, 134, 388, 774
MroI TCCGGA 1 cut(s) 631
MseI TTAA 2 cut(s) 522, 540
MspR9I CCNGG 6 cut(s) 214, 215, 275, 830, 884, 983
MwoI GCNNNNNNNGC 2 cut(s) 140, 420
NarI GGCGCC 1 cut(s) 122
NciI CCSGG 6 cut(s) 214, 215, 275, 830, 884, 983
NdeII GATC 3 cut(s) 92, 546, 755
NlaIII CATG 2 cut(s) 590, 716
NlaIV GGNNCC 4 cut(s) 79, 94, 123, 144
NmeAIII GCCGAG 1 cut(s) 862
NmuCI GTSAC 2 cut(s) 175, 886
NsbI TGCGCA 1 cut(s) 66
PagI TCATGA 1 cut(s) 712
PciSI GCTCTTC 1 cut(s) 630
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PfeI GAWTC 5 cut(s) 137, 446, 601, 628, 686
PflMI CCANNNNNTGG 1 cut(s) 543
PinAI ACCGGT 1 cut(s) 865
PkrI GCNGC 3 cut(s) 389, 562, 916
Ple19I CGATCG 1 cut(s) 758
PleI GAGTC 1 cut(s) 178
PluTI GGCGCC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 178
PpuMI RGGWCCY 1 cut(s) 254
Psp5II RGGWCCY 1 cut(s) 254
PspN4I GGNNCC 4 cut(s) 79, 94, 123, 144
PspPI GGNCC 2 cut(s) 254, 365
PspPPI RGGWCCY 1 cut(s) 254
PsuI RGATCY 1 cut(s) 92
PvuI CGATCG 1 cut(s) 758
RsaI GTAC 3 cut(s) 698, 741, 881
RsaNI GTAC 3 cut(s) 697, 740, 880
SapI GCTCTTC 1 cut(s) 630
SaqAI TTAA 2 cut(s) 522, 540
SatI GCNGC 3 cut(s) 388, 561, 915
Sau3AI GATC 3 cut(s) 92, 546, 755
Sau96I GGNCC 2 cut(s) 254, 365
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 6 cut(s) 214, 215, 275, 830, 884, 983
SduI GDGCHC 3 cut(s) 12, 211, 801
SfaNI GCATC 1 cut(s) 423
SfoI GGCGCC 1 cut(s) 123
SinI GGWCC 2 cut(s) 254, 365
SmaI CCCGGG 1 cut(s) 215
Sse9I AATT 2 cut(s) 373, 708
SsiI CCGC 5 cut(s) 38, 249, 560, 652, 802
SspDI GGCGCC 1 cut(s) 121
StyD4I CCNGG 6 cut(s) 212, 213, 273, 828, 882, 981
TaaI ACNGT 4 cut(s) 198, 406, 494, 779
TaiI ACGT 1 cut(s) 879
TasI AATT 2 cut(s) 373, 708
TatI WGTACW 1 cut(s) 696
TauI GCSGC 1 cut(s) 563
TfiI GAWTC 5 cut(s) 137, 446, 601, 628, 686
Tru1I TTAA 2 cut(s) 522, 540
Tru9I TTAA 2 cut(s) 522, 540
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 2 cut(s) 175, 886
TseI GCWGC 2 cut(s) 387, 914
Tsp45I GTSAC 2 cut(s) 175, 886
TspDTI ATGAA 5 cut(s) 452, 593, 701, 849, 942
TspGWI ACGGA 1 cut(s) 563
TspMI CCCGGG 1 cut(s) 213
TspRI CASTG 1 cut(s) 180
Van91I CCANNNNNTGG 1 cut(s) 543
VneI GTGCAC 1 cut(s) 207
VpaK11BI GGWCC 2 cut(s) 254, 365
XmaI CCCGGG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.