FvH4_2g30343

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
23519188 .. 23519497
310 bp
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UTR
Exon/CDS
Intron
FvH4_2g30343.t1

Sequence Viewer

Length: 225 bp
ATGATTGAACTTGGGTTTGAGCAAACCAAGATAGAAACTTATGAGAGATTGAGTAACCGTGGTAAGAAGGAGTTGGAGCACCACTCAGGGAGGAAACCTATCATTTACCGGGTGGCCGAGCTTAGGGATAAGGGTGGTTCATTACCGGTGGTTGAGGTGTATCCGGTGACATATGACATCAACCAGCCTAAAGCTGCTGAGCATTATGTAAGTATCAGTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.52

Weight (kDa)

6.83

Isoelectric Point (pI)

34.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 114
AfaI GTAC 1 cut(s) 220
AfiI CCNNNNNNNGG 1 cut(s) 123
AgeI ACCGGT 1 cut(s) 145
AgsI TTSAA 1 cut(s) 8
AluBI AGCT 2 cut(s) 121, 194
AluI AGCT 2 cut(s) 121, 194
Alw21I GWGCWC 1 cut(s) 81
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 1 cut(s) 194
AsiGI ACCGGT 1 cut(s) 145
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 181
BciVI GTATCC 1 cut(s) 171
BcnI CCSGG 1 cut(s) 110
BfuI GTATCC 1 cut(s) 171
BisI GCNGC 1 cut(s) 195
BlpI GCTNAGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 196
Bme1390I CCNGG 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 110
BplI GAGNNNNNCTC 2 cut(s) 68, 100
Bpu10I CCTNAGC 1 cut(s) 122
Bpu1102I GCTNAGC 1 cut(s) 198
BpuMI CCSGG 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 58
BsaWI WCCGGW 2 cut(s) 145, 163
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse118I RCCGGY 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMII CTCAG 2 cut(s) 99, 189
BseXI GCAGC 1 cut(s) 181
BshFI GGCC 1 cut(s) 116
BshTI ACCGGT 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 81
BsiSI CCGG 3 cut(s) 109, 146, 164
BslI CCNNNNNNNGG 1 cut(s) 123
BsnI GGCC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 81
Bsp1720I GCTNAGC 1 cut(s) 198
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 2 cut(s) 98, 190
BsrFI RCCGGY 1 cut(s) 145
BssAI RCCGGY 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 59
BstDEI CTNAG 3 cut(s) 85, 122, 198
BstDSI CCRYGG 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 181
BsuI GTATCC 1 cut(s) 171
BsuRI GGCC 1 cut(s) 116
BtgI CCRYGG 1 cut(s) 58
Cfr10I RCCGGY 1 cut(s) 145
Csp6I GTAC 1 cut(s) 219
CspAI ACCGGT 1 cut(s) 145
CviJI RGCY 4 cut(s) 116, 121, 187, 194
CviKI_1 RGCY 4 cut(s) 116, 121, 187, 194
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 3 cut(s) 85, 122, 198
EaeI YGGCCR 1 cut(s) 114
FaiI YATR 4 cut(s) 42, 172, 174, 207
FauNDI CATATG 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 195
Fsp4HI GCNGC 1 cut(s) 195
GluI GCNGC 1 cut(s) 195
HaeIII GGCC 1 cut(s) 116
HapII CCGG 3 cut(s) 109, 146, 164
HpaII CCGG 3 cut(s) 109, 146, 164
HphI GGTGA 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 59
HpyF3I CTNAG 3 cut(s) 85, 122, 198
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 5 cut(s) 72, 122, 159, 177, 197
Lsp1109I GCAGC 1 cut(s) 181
MaeIII GTNAC 2 cut(s) 53, 166
MhlI GDGCHC 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 2 cut(s) 84, 148
MspI CCGG 3 cut(s) 109, 146, 164
MspR9I CCNGG 1 cut(s) 110
NciI CCSGG 1 cut(s) 110
NdeI CATATG 1 cut(s) 172
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 166
PinAI ACCGGT 1 cut(s) 145
PkrI GCNGC 1 cut(s) 196
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
SatI GCNGC 1 cut(s) 195
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 1 cut(s) 81
SetI ASST 5 cut(s) 100, 123, 159, 196, 224
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 59
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.