Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000776

Physical Location & Seq

Genomic Coordinates Reverse (-)

13381467 .. 13385500

Gene Structure 4034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10220.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCAGAGACGATCGGTTGCCAACTCCAACAACCGTGGTAAGGAGTTGGAGCACCACTCAAGGAGGAAACCTATCATTTACCGGGTGGCCGAGCTTAGGGATAAGGGTGCTTCATTACCGGTGGTTGACGTGTACCCGGTGACATACGACGTCAACCAGCCTAAAGCTGCTGAGCATTATGAAAAGTTGAAGGAACATGGTGCTATTGCCAAGACTTTGCAGAGCACTCAACACCCGAATATCCCACCGGATCAGCTACCTCCTTTAGACTGGCCAACTCAACTAAGTGTTATCAAAAATGCTATGGGAGAAACAAAAGGGTCTTACCTTTGTGGTATTGGACGAGTAGGCATCCTAGAGAAGAGCACAAGGTCAACATCTTCCCCTTCACGCTCTCGACCGAATAATGAGACCCAAGTAGCGATAGAGGCTGCTAGAAAGGATGCGGCTGAGGCACAAGAGAGGGCCCAAAAAGCCGAGAAGATCGTTGAGCAGTCTGCTGCAGATTATCAAGCTTTGAAGCTGCAAATGGATCAAATCATGGCTCGAATAGGGCTACAGCCGATGTGTTCAGCCTCAGTCCCAAGCCAACAACCTAGAGACGACGATGATGATAGGGGCCTTAACACTACTCCGATTAGTTTAGGAAATCTGTCACATCCCGACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

224

Amino Acids

24.65

Weight (kDa)

8.48

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000776)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15161 FvH4_1g18892 FvH4_1g18893 FvH4_1g20162 FvH4_1g26653 FvH4_1g29050 FvH4_1g29090 FvH4_1g29091 FvH4_2g00890 FvH4_2g00890 FvH4_2g14380 FvH4_2g17540 FvH4_2g19090 FvH4_2g19770 FvH4_2g30343 FvH4_2g30344 FvH4_2g30380 FvH4_2g34010 FvH4_3g18731 FvH4_3g21360 FvH4_3g23880 FvH4_3g26330 FvH4_3g26702 FvH4_3g30710 FvH4_3g30880 FvH4_3g31911 FvH4_3g32572 FvH4_3g38790 FvH4_3g45880 FvH4_4g03280 FvH4_4g08270 FvH4_4g08610 FvH4_4g08911 FvH4_4g10030 FvH4_4g10220 FvH4_4g10221 FvH4_4g10232 FvH4_4g10233 FvH4_4g10364 FvH4_4g14460 FvH4_4g16210 FvH4_4g27150 FvH4_5g06880 FvH4_5g13180 FvH4_5g19450 FvH4_5g20620 FvH4_5g22931 FvH4_5g24202 FvH4_5g24970 FvH4_5g31450 FvH4_5g31660 FvH4_5g32550 FvH4_6g06811 FvH4_6g17172 FvH4_6g17190 FvH4_6g18010 FvH4_6g21800 FvH4_6g21871 FvH4_6g23101 FvH4_6g23360 FvH4_6g24310 FvH4_6g30100 FvH4_6g31520 FvH4_6g31530 FvH4_6g34820 FvH4_6g35510 FvH4_6g40350 FvH4_6g40360 FvH4_7g09590 FvH4_7g16000

Species

Orthologous Gene IDs

fragaria_vesca

FvH4_1g15161 FvH4_1g18892 FvH4_1g18893 FvH4_1g20162 FvH4_1g26653 FvH4_1g29050 FvH4_1g29090 FvH4_1g29091 FvH4_2g00890 FvH4_2g00890 FvH4_2g14380 FvH4_2g17540 FvH4_2g19090 FvH4_2g19770 FvH4_2g30343 FvH4_2g30344 FvH4_2g30380 FvH4_2g34010 FvH4_3g18731 FvH4_3g21360 FvH4_3g23880 FvH4_3g26330 FvH4_3g26702 FvH4_3g30710 FvH4_3g30880 FvH4_3g31911 FvH4_3g32572 FvH4_3g38790 FvH4_3g45880 FvH4_4g03280 FvH4_4g08270 FvH4_4g08610 FvH4_4g08911 FvH4_4g10030 FvH4_4g10220 FvH4_4g10221 FvH4_4g10232 FvH4_4g10233 FvH4_4g10364 FvH4_4g14460 FvH4_4g16210 FvH4_4g27150 FvH4_5g06880 FvH4_5g13180 FvH4_5g19450 FvH4_5g20620 FvH4_5g22931 FvH4_5g24202 FvH4_5g24970 FvH4_5g31450 FvH4_5g31660 FvH4_5g32550 FvH4_6g06811 FvH4_6g17172 FvH4_6g17190 FvH4_6g18010 FvH4_6g21800 FvH4_6g21871 FvH4_6g23101 FvH4_6g23360 FvH4_6g24310 FvH4_6g30100 FvH4_6g31520 FvH4_6g31530 FvH4_6g34820 FvH4_6g35510 FvH4_6g40350 FvH4_6g40360 FvH4_7g09590 FvH4_7g16000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	153
AciI	CCGC	1 cut(s)	446
AclWI	GGATC	2 cut(s)	258, 540
AcoI	YGGCCR	2 cut(s)	87, 272
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	40, 96
AflIII	ACRYGT	1 cut(s)	129
AgeI	ACCGGT	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	190, 520
AjiI	CACGTC	1 cut(s)	130
AluBI	AGCT	5 cut(s)	94, 167, 256, 515, 523
AluI	AGCT	5 cut(s)	94, 167, 256, 515, 523
Alw21I	GWGCWC	3 cut(s)	54, 227, 368
Alw26I	GTCTC	2 cut(s)	404, 594
AlwI	GGATC	2 cut(s)	258, 540
AoxI	GGCC	4 cut(s)	87, 272, 465, 619
ApaI	GGGCCC	1 cut(s)	469
ApeKI	GCWGC	4 cut(s)	167, 431, 500, 523
AsiGI	ACCGGT	1 cut(s)	118
AspS9I	GGNCC	3 cut(s)	465, 466, 619
AsuC2I	CCSGG	2 cut(s)	83, 137
AsuHPI	GGTGA	1 cut(s)	151
BaeGI	GKGCMC	1 cut(s)	469
BalI	TGGCCA	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	469
Bbv12I	GWGCWC	3 cut(s)	54, 227, 368
BbvCI	CCTCAGC	1 cut(s)	450
BbvI	GCAGC	4 cut(s)	154, 418, 487, 510
BcnI	CCSGG	2 cut(s)	83, 137
BcoDI	GTCTC	2 cut(s)	404, 594
BfaI	CTAG	3 cut(s)	356, 435, 597
BfmI	CTRYAG	2 cut(s)	501, 557
BisI	GCNGC	5 cut(s)	168, 432, 447, 501, 524
BlpI	GCTNAGC	1 cut(s)	171
BlsI	GCNGC	5 cut(s)	169, 433, 448, 502, 525
Bme1390I	CCNGG	2 cut(s)	83, 137
BmgBI	CACGTC	1 cut(s)	130
BmgT120I	GGNCC	3 cut(s)	465, 466, 619
BmiI	GGNNCC	2 cut(s)	467, 620
BmrFI	CCNGG	2 cut(s)	83, 137
BmsI	GCATC	2 cut(s)	360, 433
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
Bpu10I	CCTNAGC	2 cut(s)	95, 450
Bpu1102I	GCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	43
BpuMI	CCSGG	2 cut(s)	83, 137
BsaHI	GRCGYC	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	404
BsaJI	CCNNGG	1 cut(s)	34
BsaWI	WCCGGW	2 cut(s)	118, 247
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 96
Bse118I	RCCGGY	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	275
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	3 cut(s)	351, 448, 658
BseLI	CCNNNNNNNGG	2 cut(s)	40, 96
BseMII	CTCAG	3 cut(s)	162, 441, 591
BseNI	ACTGG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	469
BseXI	GCAGC	4 cut(s)	154, 418, 487, 510
Bsh1285I	CGRYCG	2 cut(s)	14, 401
BshFI	GGCC	4 cut(s)	89, 274, 467, 621
BshTI	ACCGGT	1 cut(s)	118
BsiEI	CGRYCG	2 cut(s)	14, 401
BsiHKAI	GWGCWC	3 cut(s)	54, 227, 368
BsiSI	CCGG	4 cut(s)	82, 119, 137, 248
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	2 cut(s)	40, 96
BsmAI	GTCTC	2 cut(s)	404, 594
BsmBI	CGTCTC	1 cut(s)	594
BsmFI	GGGAC	1 cut(s)	566
BsnI	GGCC	4 cut(s)	89, 274, 467, 621
Bso31I	GGTCTC	1 cut(s)	404
Bsp120I	GGGCCC	1 cut(s)	465
Bsp1286I	GDGCHC	4 cut(s)	54, 227, 368, 469
Bsp143I	GATC	4 cut(s)	11, 250, 483, 532
Bsp1720I	GCTNAGC	1 cut(s)	171
BspACI	CCGC	1 cut(s)	446
BspANI	GGCC	4 cut(s)	89, 274, 467, 621
BspCNI	CTCAG	3 cut(s)	163, 442, 590
BspLI	GGNNCC	2 cut(s)	467, 620
BspMAI	CTGCAG	1 cut(s)	505
BspPI	GGATC	2 cut(s)	258, 540
BspQI	GCTCTTC	1 cut(s)	356
BspTNI	GGTCTC	1 cut(s)	404
BsrFI	RCCGGY	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	275
BssAI	RCCGGY	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	4 cut(s)	11, 250, 483, 532
BssNI	GRCGYC	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	1 cut(s)	356
BstACI	GRCGYC	1 cut(s)	150
BstDEI	CTNAG	5 cut(s)	95, 171, 284, 450, 577
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	3 cut(s)	351, 448, 658
BstKTI	GATC	4 cut(s)	14, 253, 486, 535
BstMAI	GTCTC	2 cut(s)	404, 594
BstMBI	GATC	4 cut(s)	11, 250, 483, 532
BstMCI	CGRYCG	2 cut(s)	14, 401
BstMWI	GCNNNNNNNGC	3 cut(s)	428, 452, 473
BstSCI	CCNGG	2 cut(s)	81, 135
BstSFI	CTRYAG	2 cut(s)	501, 557
BstSLI	GKGCMC	1 cut(s)	469
BstV1I	GCAGC	4 cut(s)	154, 418, 487, 510
BsuRI	GGCC	4 cut(s)	89, 274, 467, 621
BtgI	CCRYGG	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	3 cut(s)	351, 448, 658
Cfr10I	RCCGGY	1 cut(s)	118
Cfr13I	GGNCC	3 cut(s)	465, 466, 619
Csp6I	GTAC	1 cut(s)	133
CspAI	ACCGGT	1 cut(s)	118
CspCI	CAANNNNNGTGG	2 cut(s)	16, 51
CviAII	CATG	2 cut(s)	197, 541
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	5 cut(s)	95, 171, 284, 450, 577
DpnI	GATC	4 cut(s)	13, 252, 485, 534
DpnII	GATC	4 cut(s)	11, 250, 483, 532
EaeI	YGGCCR	2 cut(s)	87, 272
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
Eco24I	GRGCYC	1 cut(s)	469
Eco31I	GGTCTC	1 cut(s)	404
EcoO109I	RGGNCCY	2 cut(s)	465, 619
EcoT38I	GRGCYC	1 cut(s)	469
Esp3I	CGTCTC	1 cut(s)	594
FaeI	CATG	2 cut(s)	200, 544
FaiI	YATR	5 cut(s)	145, 180, 198, 305, 542
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	2 cut(s)	196, 540
Fnu4HI	GCNGC	5 cut(s)	168, 432, 447, 501, 524
FokI	GGATG	3 cut(s)	338, 455, 645
FriOI	GRGCYC	1 cut(s)	469
Fsp4HI	GCNGC	5 cut(s)	168, 432, 447, 501, 524
FspBI	CTAG	3 cut(s)	356, 435, 597
GluI	GCNGC	5 cut(s)	168, 432, 447, 501, 524
HaeIII	GGCC	4 cut(s)	89, 274, 467, 621
HapII	CCGG	4 cut(s)	82, 119, 137, 248
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	2 cut(s)	200, 544
HincII	GTYRAC	3 cut(s)	127, 154, 375
HindII	GTYRAC	3 cut(s)	127, 154, 375
HindIII	AAGCTT	1 cut(s)	513
HinfI	GANTC	1 cut(s)	665
HpaII	CCGG	4 cut(s)	82, 119, 137, 248
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	4 cut(s)	127, 133, 154, 375
Hpy188I	TCNGA	1 cut(s)	636
Hpy188III	TCNNGA	2 cut(s)	396, 662
Hpy8I	GTNNAC	4 cut(s)	127, 133, 154, 375
Hpy99I	CGWCG	2 cut(s)	152, 608
HpyAV	CCTTC	2 cut(s)	184, 396
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4IV	ACGT	2 cut(s)	129, 150
HpyCH4V	TGCA	4 cut(s)	4, 220, 503, 526
HpyF10VI	GCNNNNNNNGC	3 cut(s)	428, 452, 473
HpyF3I	CTNAG	5 cut(s)	95, 171, 284, 450, 577
HpySE526I	ACGT	2 cut(s)	129, 150
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	2 cut(s)	200, 544
Kzo9I	GATC	4 cut(s)	11, 250, 483, 532
LguI	GCTCTTC	1 cut(s)	356
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	6 cut(s)	95, 132, 150, 170, 256, 261
Lsp1109I	GCAGC	4 cut(s)	154, 418, 487, 510
LweI	GCATC	2 cut(s)	360, 433
MaeI	CTAG	3 cut(s)	356, 435, 597
MaeII	ACGT	2 cut(s)	129, 150
MaeIII	GTNAC	2 cut(s)	139, 654
MalI	GATC	4 cut(s)	13, 252, 485, 534
MboI	GATC	4 cut(s)	11, 250, 483, 532
MboII	GAAGA	3 cut(s)	372, 373, 493
MhlI	GDGCHC	4 cut(s)	54, 227, 368, 469
MlsI	TGGCCA	1 cut(s)	274
MluNI	TGGCCA	1 cut(s)	274
MlyI	GAGTC	1 cut(s)	659
MmeI	TCCRAC	2 cut(s)	27, 51
MnlI	CCTC	6 cut(s)	57, 270, 421, 445, 456, 586
Mox20I	TGGCCA	1 cut(s)	274
MscI	TGGCCA	1 cut(s)	274
MseI	TTAA	2 cut(s)	624, 670
Msp20I	TGGCCA	1 cut(s)	274
MspI	CCGG	4 cut(s)	82, 119, 137, 248
MspR9I	CCNGG	2 cut(s)	83, 137
MwoI	GCNNNNNNNGC	3 cut(s)	428, 452, 473
NciI	CCSGG	2 cut(s)	83, 137
NdeII	GATC	4 cut(s)	11, 250, 483, 532
NlaIII	CATG	2 cut(s)	200, 544
NlaIV	GGNNCC	2 cut(s)	467, 620
NmeAIII	GCCGAG	2 cut(s)	115, 502
NmuCI	GTSAC	2 cut(s)	139, 654
PciSI	GCTCTTC	1 cut(s)	356
PinAI	ACCGGT	1 cut(s)	118
PkrI	GCNGC	5 cut(s)	169, 433, 448, 502, 525
Ple19I	CGATCG	1 cut(s)	14
PleI	GAGTC	1 cut(s)	659
PpsI	GAGTC	1 cut(s)	659
PspN4I	GGNNCC	2 cut(s)	467, 620
PspOMI	GGGCCC	1 cut(s)	465
PspPI	GGNCC	3 cut(s)	465, 466, 619
PstI	CTGCAG	1 cut(s)	505
PvuI	CGATCG	1 cut(s)	14
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SapI	GCTCTTC	1 cut(s)	356
SaqAI	TTAA	2 cut(s)	624, 670
SatI	GCNGC	5 cut(s)	168, 432, 447, 501, 524
Sau3AI	GATC	4 cut(s)	11, 250, 483, 532
Sau96I	GGNCC	3 cut(s)	465, 466, 619
SchI	GAGTC	1 cut(s)	659
ScrFI	CCNGG	2 cut(s)	83, 137
SduI	GDGCHC	4 cut(s)	54, 227, 368, 469
SfaNI	GCATC	2 cut(s)	360, 433
SfcI	CTRYAG	2 cut(s)	501, 557
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
SsiI	CCGC	1 cut(s)	446
SspMI	CTAG	3 cut(s)	356, 435, 597
StyD4I	CCNGG	2 cut(s)	81, 135
TaaI	ACNGT	1 cut(s)	35
TaiI	ACGT	2 cut(s)	132, 153
TaqI	TCGA	2 cut(s)	397, 547
TaqII	GACCGA	1 cut(s)	415
TauI	GCSGC	1 cut(s)	449
Tru1I	TTAA	2 cut(s)	624, 670
Tru9I	TTAA	2 cut(s)	624, 670
TseFI	GTSAC	2 cut(s)	139, 654
TseI	GCWGC	4 cut(s)	167, 431, 500, 523
Tsp45I	GTSAC	2 cut(s)	139, 654
TspDTI	ATGAA	2 cut(s)	102, 195
XspI	CTAG	3 cut(s)	356, 435, 597
ZraI	GACGTC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.