FvH4_6g21800

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000776
Physical Location & Seq
Forward (+)
15397257 .. 15400705
3449 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21800.t1

Sequence Viewer

Length: 1215 bp
ATGGCGCCTTCGTCAAGTTCGGCACCTCCTCTCCCTCCACCACTGCCCGATGTCGACGAACCTTCCTCAGATGATCATCGGATTGGCCAGTCATCTGCTAAGATCAGCGTTCGGCGCAAACTGTGTCCTGAAGGAGCACCTCCCCCTAAACCCAAGACAAGGGTGGTAAAAGGCTTAAAAGCGGAGGAGATAGTCAAGAGGACTGGATTCAATATTAAAGTAACTTGGGACGATTTCTGCCACGGTCCGAAGAGTAAAGAGTTAAGCAGCTTGTTGACACACGATGTCGGCCACATTATACGGGACGAAATTTCCATGGTGGCTCCAACTTGGGGTGACACTACTGATGATGAGCAGAAGAAGCTGCCCACTAAACTCTTTATCTTTTATGAGTTTGATGTTGATGATAAGCTTATGTGGAAGTGGTTGGACGACAAGGCTAAAAATGTGTACAAAAACTGGAAATGCACTATAAATACAATTAGGAAGGAAAACTCGAGGAAGATCCTAGAAGAGTTTGAACACCGGCTGGATGAGTGGAACTGGCTCCTCAAACACTTCAATTTTGATGGATTCACGCTTCATGTTAATAACCAAAGTGTTAATATGATGAAATTACAAAGAAGATTGGCTGCAAACAAGAGTAACCAGGACAAAAAGACATTGCACCACCACACCAGGGCGAGGCCTTTCATCTACAATGCGAAGGAATTGAAGGACAAGGGTGAACACCTCTATTTTATCAAAAGTTACTCACAGGCGTATGACTCAGCTCACAACATGAAAGCAGCTAAAAATGAAGCTAAACTGATGGAGAAGGTTGATGAGATCCGTGACAATGTGAGGAAGGAATACCTTGGTATTCCGGAAGAAGATATTGATCTTCATTTTGACCAACAAACTCAGGCGATCGTATTTGAAAAAGCATTTGGACATAGAAACATGAACGAGACTCGGGGCATGGGACTAGTAGGCAGTTATAGTTTGAGTCAAGGGCCCGATAGGAGCTGCACTTCACGTTACCAACGAGTTGCACTTGTTGATATTGTTGTAGAGGAAGCCCAAAAGGCCAAGGAGGAAGCCAGGAAAGCCAATGAGGAAGCCCGAAAAGCCAAGGAAGAGAACATACAAATCATGGCACGTCTTCAACAATGTGAGCAGTTTCTCTTCACCAAATTCGGCGTATGCCAGCCGGCAGTCCCACCACTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

405

Amino Acids

46.68

Weight (kDa)

8.51

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 22
AccI GTMKAC 1 cut(s) 54
AccIII TCCGGA 1 cut(s) 865
AciI CCGC 1 cut(s) 182
AclWI GGATC 2 cut(s) 499, 823
AcoI YGGCCR 2 cut(s) 85, 289
AcsI RAATTY 2 cut(s) 309, 1175
AcuI CTGAAG 1 cut(s) 150
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 452
AfiI CCNNNNNNNGG 5 cut(s) 159, 332, 679, 684, 1207
AgsI TTSAA 6 cut(s) 211, 521, 562, 715, 920, 1148
AhlI ACTAGT 1 cut(s) 967
AjiI CACGTC 1 cut(s) 1142
AjnI CCWGG 3 cut(s) 648, 677, 1082
AjuI GAANNNNNNNTTGG 2 cut(s) 912, 944
AluBI AGCT 7 cut(s) 270, 364, 412, 773, 791, 803, 1008
AluI AGCT 7 cut(s) 270, 364, 412, 773, 791, 803, 1008
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 944
AlwI GGATC 2 cut(s) 499, 823
Ama87I CYCGRG 2 cut(s) 496, 954
Aor13HI TCCGGA 1 cut(s) 865
AoxI GGCC 5 cut(s) 85, 289, 686, 995, 1068
ApaI GGGCCC 1 cut(s) 999
ApeKI GCWGC 5 cut(s) 267, 364, 632, 788, 1008
ApoI RAATTY 2 cut(s) 309, 1175
AspLEI GCGC 2 cut(s) 7, 117
AspS9I GGNCC 3 cut(s) 245, 995, 996
AsuHPI GGTGA 3 cut(s) 347, 737, 1162
AvaI CYCGRG 2 cut(s) 496, 954
AvaII GGWCC 1 cut(s) 245
BaeGI GKGCMC 1 cut(s) 999
BalI TGGCCA 1 cut(s) 87
BanI GGYRCC 2 cut(s) 4, 22
BanII GRGCYC 1 cut(s) 999
BarI GAAGNNNNNNTAC 2 cut(s) 1110, 1142
BbsI GAAGAC 1 cut(s) 1136
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 5 cut(s) 279, 351, 619, 800, 995
BccI CCATC 2 cut(s) 563, 805
BciT130I CCWGG 3 cut(s) 650, 679, 1084
BclI TGATCA 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 944
BcuI ACTAGT 1 cut(s) 967
BfaI CTAG 2 cut(s) 509, 968
BfoI RGCGCY 1 cut(s) 8
BglI GCCNNNNNGGC 1 cut(s) 1067
BisI GCNGC 5 cut(s) 268, 365, 633, 789, 1009
BlsI GCNGC 5 cut(s) 269, 366, 634, 790, 1010
Bme1390I CCNGG 3 cut(s) 650, 679, 1084
Bme18I GGWCC 1 cut(s) 245
BmeT110I CYCGRG 2 cut(s) 496, 954
BmgBI CACGTC 1 cut(s) 1142
BmgT120I GGNCC 3 cut(s) 245, 995, 996
BmiI GGNNCC 5 cut(s) 6, 24, 324, 548, 997
BmrFI CCNGG 3 cut(s) 650, 679, 1084
BpiI GAAGAC 1 cut(s) 1136
BsaBI GATNNNNATC 2 cut(s) 75, 879
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 6 cut(s) 241, 315, 678, 856, 1071, 1113
BsaWI WCCGGW 1 cut(s) 865
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 5 cut(s) 159, 332, 679, 684, 1207
Bse118I RCCGGY 2 cut(s) 525, 1192
Bse1I ACTGG 5 cut(s) 88, 208, 464, 548, 1212
Bse3DI GCAATG 1 cut(s) 662
Bse8I GATNNNNATC 2 cut(s) 75, 879
BseAI TCCGGA 1 cut(s) 865
BseBI CCWGG 3 cut(s) 650, 679, 1084
BseDI CCNNGG 6 cut(s) 241, 315, 678, 856, 1071, 1113
BseGI GGATG 1 cut(s) 538
BseJI GATNNNNATC 2 cut(s) 75, 879
BseLI CCNNNNNNNGG 5 cut(s) 159, 332, 679, 684, 1207
BseMI GCAATG 1 cut(s) 662
BseMII CTCAG 3 cut(s) 81, 783, 917
BseNI ACTGG 5 cut(s) 88, 208, 464, 548, 1212
BseRI GAGGAG 3 cut(s) 18, 200, 539
BseSI GKGCMC 1 cut(s) 999
BseXI GCAGC 5 cut(s) 279, 351, 619, 800, 995
BsgI GTGCAG 1 cut(s) 994
Bsh1285I CGRYCG 1 cut(s) 912
BshFI GGCC 5 cut(s) 87, 291, 688, 997, 1070
BshNI GGYRCC 2 cut(s) 4, 22
BsiEI CGRYCG 1 cut(s) 912
BsiHKAI GWGCWC 1 cut(s) 139
BsiHKCI CYCGRG 2 cut(s) 496, 954
BsiSI CCGG 3 cut(s) 526, 866, 1193
BslFI GGGAC 4 cut(s) 242, 317, 978, 1184
BslI CCNNNNNNNGG 5 cut(s) 159, 332, 679, 684, 1207
BsmAI GTCTC 1 cut(s) 944
BsmFI GGGAC 4 cut(s) 242, 317, 978, 1184
BsnI GGCC 5 cut(s) 87, 291, 688, 997, 1070
BsoBI CYCGRG 2 cut(s) 496, 954
Bsp120I GGGCCC 1 cut(s) 995
Bsp1286I GDGCHC 2 cut(s) 139, 999
Bsp13I TCCGGA 1 cut(s) 865
Bsp1407I TGTACA 1 cut(s) 450
Bsp143I GATC 6 cut(s) 73, 102, 504, 828, 880, 909
Bsp19I CCATGG 1 cut(s) 315
BspACI CCGC 1 cut(s) 182
BspANI GGCC 5 cut(s) 87, 291, 688, 997, 1070
BspCNI CTCAG 3 cut(s) 80, 782, 916
BspEI TCCGGA 1 cut(s) 865
BspLI GGNNCC 5 cut(s) 6, 24, 324, 548, 997
BspPI GGATC 2 cut(s) 499, 823
BspT107I GGYRCC 2 cut(s) 4, 22
BsrDI GCAATG 1 cut(s) 662
BsrFI RCCGGY 2 cut(s) 525, 1192
BsrGI TGTACA 1 cut(s) 450
BsrI ACTGG 5 cut(s) 88, 208, 464, 548, 1212
BssAI RCCGGY 2 cut(s) 525, 1192
BssECI CCNNGG 6 cut(s) 241, 315, 678, 856, 1071, 1113
BssMI GATC 6 cut(s) 73, 102, 504, 828, 880, 909
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 4 cut(s) 315, 856, 1071, 1113
Bst2UI CCWGG 3 cut(s) 650, 679, 1084
Bst4CI ACNGT 2 cut(s) 123, 245
Bst6I CTCTTC 4 cut(s) 245, 507, 1113, 1172
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 450
BstC8I GCNNGC 2 cut(s) 1190, 1194
BstDEI CTNAG 4 cut(s) 67, 99, 769, 903
BstDSI CCRYGG 2 cut(s) 241, 315
BstF5I GGATG 1 cut(s) 538
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 117
BstKTI GATC 6 cut(s) 76, 105, 507, 831, 883, 912
BstMAI GTCTC 1 cut(s) 944
BstMBI GATC 6 cut(s) 73, 102, 504, 828, 880, 909
BstMCI CGRYCG 1 cut(s) 912
BstMWI GCNNNNNNNGC 5 cut(s) 114, 361, 1067, 1088, 1109
BstNI CCWGG 3 cut(s) 650, 679, 1084
BstSCI CCNGG 3 cut(s) 648, 677, 1082
BstSLI GKGCMC 1 cut(s) 999
BstV1I GCAGC 5 cut(s) 279, 351, 619, 800, 995
BstV2I GAAGAC 1 cut(s) 1136
BstX2I RGATCY 2 cut(s) 504, 828
BstYI RGATCY 2 cut(s) 504, 828
BsuRI GGCC 5 cut(s) 87, 291, 688, 997, 1070
BtgI CCRYGG 2 cut(s) 241, 315
BtrI CACGTC 1 cut(s) 1142
BtsCI GGATG 1 cut(s) 538
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 2 cut(s) 41, 1205
Cac8I GCNNGC 2 cut(s) 1190, 1194
CfoI GCGC 2 cut(s) 7, 117
Cfr10I RCCGGY 2 cut(s) 525, 1192
Cfr13I GGNCC 3 cut(s) 245, 995, 996
CpoI CGGWCCG 1 cut(s) 245
Csp6I GTAC 1 cut(s) 451
CspI CGGWCCG 1 cut(s) 245
CviAII CATG 6 cut(s) 316, 584, 781, 943, 961, 1135
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 4 cut(s) 67, 99, 769, 903
DinI GGCGCC 1 cut(s) 6
DpnI GATC 6 cut(s) 75, 104, 506, 830, 882, 911
DpnII GATC 6 cut(s) 73, 102, 504, 828, 880, 909
EaeI YGGCCR 2 cut(s) 85, 289
Eam1104I CTCTTC 4 cut(s) 245, 507, 1113, 1172
EarI CTCTTC 4 cut(s) 245, 507, 1113, 1172
Eco130I CCWWGG 4 cut(s) 315, 856, 1071, 1113
Eco147I AGGCCT 1 cut(s) 688
Eco24I GRGCYC 1 cut(s) 999
Eco47I GGWCC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 150
Eco88I CYCGRG 2 cut(s) 496, 954
EcoO109I RGGNCCY 1 cut(s) 995
EcoRII CCWGG 3 cut(s) 648, 677, 1082
EcoT14I CCWWGG 4 cut(s) 315, 856, 1071, 1113
EcoT38I GRGCYC 1 cut(s) 999
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 4 cut(s) 315, 856, 1071, 1113
FaeI CATG 6 cut(s) 319, 587, 784, 946, 964, 1138
FaqI GGGAC 4 cut(s) 242, 317, 978, 1184
FatI CATG 6 cut(s) 315, 583, 780, 942, 960, 1134
FbaI TGATCA 1 cut(s) 73
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 5 cut(s) 268, 365, 633, 789, 1009
FokI GGATG 1 cut(s) 545
FriOI GRGCYC 1 cut(s) 999
Fsp4HI GCNGC 5 cut(s) 268, 365, 633, 789, 1009
FspBI CTAG 2 cut(s) 509, 968
GlaI GCGC 2 cut(s) 6, 116
GluI GCNGC 5 cut(s) 268, 365, 633, 789, 1009
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 5 cut(s) 87, 291, 688, 997, 1070
HapII CCGG 3 cut(s) 526, 866, 1193
HhaI GCGC 2 cut(s) 7, 117
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 319, 587, 784, 946, 964, 1138
Hin6I GCGC 2 cut(s) 5, 115
HinP1I GCGC 2 cut(s) 5, 115
HincII GTYRAC 2 cut(s) 55, 276
HindII GTYRAC 2 cut(s) 55, 276
HindIII AAGCTT 1 cut(s) 410
HinfI GANTC 5 cut(s) 207, 573, 767, 952, 988
HpaII CCGG 3 cut(s) 526, 866, 1193
HphI GGTGA 3 cut(s) 347, 737, 1162
Hpy166II GTNNAC 4 cut(s) 55, 276, 451, 728
Hpy188I TCNGA 3 cut(s) 70, 81, 249
Hpy188III TCNNGA 3 cut(s) 128, 196, 866
Hpy8I GTNNAC 4 cut(s) 55, 276, 451, 728
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 8 cut(s) 18, 72, 125, 481, 700, 709, 811, 841
HpyCH4III ACNGT 2 cut(s) 123, 245
HpyCH4IV ACGT 2 cut(s) 1018, 1141
HpyCH4V TGCA 5 cut(s) 468, 635, 667, 1011, 1034
HpyF10VI GCNNNNNNNGC 5 cut(s) 114, 361, 1067, 1088, 1109
HpyF3I CTNAG 4 cut(s) 67, 99, 769, 903
HpySE526I ACGT 2 cut(s) 1018, 1141
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 319, 587, 784, 946, 964, 1138
HspAI GCGC 2 cut(s) 5, 115
KasI GGCGCC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 865
KroI GCCGGC 1 cut(s) 1192
KroNI GCCGGC 1 cut(s) 1194
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 6 cut(s) 73, 102, 504, 828, 880, 909
LmnI GCTCC 4 cut(s) 134, 328, 552, 1005
Lsp1109I GCAGC 5 cut(s) 279, 351, 619, 800, 995
MaeI CTAG 2 cut(s) 509, 968
MaeII ACGT 2 cut(s) 1018, 1141
MaeIII GTNAC 6 cut(s) 220, 335, 644, 749, 833, 1019
MalI GATC 6 cut(s) 75, 104, 506, 830, 882, 911
MboI GATC 6 cut(s) 73, 102, 504, 828, 880, 909
MflI RGATCY 2 cut(s) 504, 828
MhlI GDGCHC 2 cut(s) 139, 999
MlsI TGGCCA 1 cut(s) 87
MluCI AATT 6 cut(s) 309, 480, 562, 614, 710, 1175
MluNI TGGCCA 1 cut(s) 87
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 3 cut(s) 761, 946, 997
MmeI TCCRAC 2 cut(s) 350, 408
Mox20I TGGCCA 1 cut(s) 87
MroI TCCGGA 1 cut(s) 865
MroNI GCCGGC 1 cut(s) 1192
MscI TGGCCA 1 cut(s) 87
MseI TTAA 5 cut(s) 176, 216, 263, 588, 603
Msp20I TGGCCA 1 cut(s) 87
MspI CCGG 3 cut(s) 526, 866, 1193
MspR9I CCNGG 3 cut(s) 650, 679, 1084
MvaI CCWGG 3 cut(s) 650, 679, 1084
MwoI GCNNNNNNNGC 5 cut(s) 114, 361, 1067, 1088, 1109
NaeI GCCGGC 1 cut(s) 1194
NarI GGCGCC 1 cut(s) 5
NcoI CCATGG 1 cut(s) 315
NdeII GATC 6 cut(s) 73, 102, 504, 828, 880, 909
NgoMIV GCCGGC 1 cut(s) 1192
NlaIII CATG 6 cut(s) 319, 587, 784, 946, 964, 1138
NlaIV GGNNCC 5 cut(s) 6, 24, 324, 548, 997
NmuCI GTSAC 2 cut(s) 335, 833
PaeR7I CTCGAG 1 cut(s) 496
PceI AGGCCT 1 cut(s) 688
PcsI WCGNNNNNNNCGW 1 cut(s) 1024
PdiI GCCGGC 1 cut(s) 1194
PfeI GAWTC 2 cut(s) 207, 573
PkrI GCNGC 5 cut(s) 269, 366, 634, 790, 1010
Ple19I CGATCG 1 cut(s) 912
PleI GAGTC 3 cut(s) 761, 946, 996
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 3 cut(s) 761, 946, 996
Psp6I CCWGG 3 cut(s) 648, 677, 1082
PspGI CCWGG 3 cut(s) 648, 677, 1082
PspN4I GGNNCC 5 cut(s) 6, 24, 324, 548, 997
PspOMI GGGCCC 1 cut(s) 995
PspPI GGNCC 3 cut(s) 245, 995, 996
PspXI VCTCGAGB 1 cut(s) 496
PsuI RGATCY 2 cut(s) 504, 828
PvuI CGATCG 1 cut(s) 912
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
Rsr2I CGGWCCG 1 cut(s) 245
RsrII CGGWCCG 1 cut(s) 245
SalI GTCGAC 1 cut(s) 53
SaqAI TTAA 5 cut(s) 176, 216, 263, 588, 603
SatI GCNGC 5 cut(s) 268, 365, 633, 789, 1009
Sau3AI GATC 6 cut(s) 73, 102, 504, 828, 880, 909
Sau96I GGNCC 3 cut(s) 245, 995, 996
SchI GAGTC 3 cut(s) 761, 946, 997
ScrFI CCNGG 3 cut(s) 650, 679, 1084
SduI GDGCHC 2 cut(s) 139, 999
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 496
SinI GGWCC 1 cut(s) 245
SlaI CTCGAG 1 cut(s) 496
SmlI CTYRAG 1 cut(s) 496
SmoI CTYRAG 1 cut(s) 496
SpeI ACTAGT 1 cut(s) 967
Sse9I AATT 6 cut(s) 309, 480, 562, 614, 710, 1175
SseBI AGGCCT 1 cut(s) 688
SsiI CCGC 1 cut(s) 182
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 214
SspMI CTAG 2 cut(s) 509, 968
StuI AGGCCT 1 cut(s) 688
StyD4I CCNGG 3 cut(s) 648, 677, 1082
StyI CCWWGG 4 cut(s) 315, 856, 1071, 1113
TaaI ACNGT 2 cut(s) 123, 245
TaiI ACGT 2 cut(s) 1021, 1144
TaqI TCGA 2 cut(s) 54, 497
TasI AATT 6 cut(s) 309, 480, 562, 614, 710, 1175
TatI WGTACW 1 cut(s) 450
TfiI GAWTC 2 cut(s) 207, 573
Tru1I TTAA 5 cut(s) 176, 216, 263, 588, 603
Tru9I TTAA 5 cut(s) 176, 216, 263, 588, 603
TscAI CASTG 2 cut(s) 48, 1212
TseFI GTSAC 2 cut(s) 335, 833
TseI GCWGC 5 cut(s) 267, 364, 632, 788, 1008
Tsp45I GTSAC 2 cut(s) 335, 833
TspDTI ATGAA 7 cut(s) 572, 626, 682, 797, 813, 875, 959
TspGWI ACGGA 1 cut(s) 821
TspRI CASTG 2 cut(s) 48, 1212
VpaK11BI GGWCC 1 cut(s) 245
XapI RAATTY 2 cut(s) 309, 1175
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XhoI CTCGAG 1 cut(s) 496
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 2 cut(s) 509, 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.