FvH4_4g03280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000776
Physical Location & Seq
Forward (+)
2909071 .. 2909678
608 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g03280.t1

Sequence Viewer

Length: 354 bp
ATGGGAGAAACAAAAGGGTCTTACCTTCGTGGTATTGGACGAGCAGGCATCCTAGAGAAGAGCACAAGGTCAACATCTTCCCCTTCACGCTCTCGACCGAATAATGAGGCGATGGCAGCGATAGAGGCTGCTAAAAAGGAGGCGGCTGAAGCACAAGAGAGGGCCCAAAAAGCCGAGAAGATCGCTGAGCAGTCTGCTGTAGATTATCAAGTTTTGAAGTTGCAAATGGATCAAATCATGGCTCGAATAGGGCTACAGCCTATGTGTTCACCCTTGGTCCTAAGCCAACAACCTCGAGACGACGATGATGATAGAGGCCTTGACACTTCTCCGATTAGTTTAAGAAATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.8

Weight (kDa)

6.3

Isoelectric Point (pI)

55.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 143
AclWI GGATC 1 cut(s) 237
AcuI CTGAAG 1 cut(s) 168
AgsI TTSAA 1 cut(s) 217
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 1 cut(s) 291
AlwI GGATC 1 cut(s) 237
Ama87I CYCGRG 1 cut(s) 294
AoxI GGCC 2 cut(s) 162, 316
ApaI GGGCCC 1 cut(s) 166
ApeKI GCWGC 2 cut(s) 116, 128
AspS9I GGNCC 3 cut(s) 162, 163, 277
AsuHPI GGTGA 1 cut(s) 261
AvaI CYCGRG 1 cut(s) 294
AvaII GGWCC 1 cut(s) 277
BaeGI GKGCMC 1 cut(s) 166
BanII GRGCYC 1 cut(s) 166
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 2 cut(s) 115, 128
BccI CCATC 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 1 cut(s) 53
BfmI CTRYAG 2 cut(s) 198, 254
BisI GCNGC 3 cut(s) 117, 129, 144
BlpI GCTNAGC 1 cut(s) 186
BlsI GCNGC 3 cut(s) 118, 130, 145
Bme18I GGWCC 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 294
BmgT120I GGNCC 3 cut(s) 162, 163, 277
BmiI GGNNCC 1 cut(s) 164
BmsI GCATC 1 cut(s) 57
Bpu10I CCTNAGC 1 cut(s) 281
Bpu1102I GCTNAGC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 273
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 177
BseSI GKGCMC 1 cut(s) 166
BseXI GCAGC 2 cut(s) 115, 128
Bsh1285I CGRYCG 1 cut(s) 98
BshFI GGCC 2 cut(s) 164, 318
BsiEI CGRYCG 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 65
BsiHKCI CYCGRG 1 cut(s) 294
BsmAI GTCTC 1 cut(s) 291
BsmBI CGTCTC 1 cut(s) 291
BsnI GGCC 2 cut(s) 164, 318
BsoBI CYCGRG 1 cut(s) 294
Bsp120I GGGCCC 1 cut(s) 162
Bsp1286I GDGCHC 2 cut(s) 65, 166
Bsp143I GATC 2 cut(s) 180, 229
Bsp1720I GCTNAGC 1 cut(s) 186
BspACI CCGC 1 cut(s) 143
BspANI GGCC 2 cut(s) 164, 318
BspCNI CTCAG 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 164
BspPI GGATC 1 cut(s) 237
BspQI GCTCTTC 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 2 cut(s) 180, 229
BssT1I CCWWGG 1 cut(s) 273
Bst6I CTCTTC 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 2 cut(s) 186, 281
BstF5I GGATG 1 cut(s) 48
BstKTI GATC 2 cut(s) 183, 232
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 2 cut(s) 180, 229
BstMCI CGRYCG 1 cut(s) 98
BstMWI GCNNNNNNNGC 4 cut(s) 116, 125, 149, 170
BstSFI CTRYAG 2 cut(s) 198, 254
BstSLI GKGCMC 1 cut(s) 166
BstV1I GCAGC 2 cut(s) 115, 128
BsuRI GGCC 2 cut(s) 164, 318
BtgZI GCGATG 1 cut(s) 125
BtsCI GGATG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 46
Cfr13I GGNCC 3 cut(s) 162, 163, 277
CviAII CATG 1 cut(s) 238
CviJI RGCY 9 cut(s) 128, 146, 164, 173, 242, 253, 259, 285, 318
CviKI_1 RGCY 9 cut(s) 128, 146, 164, 173, 242, 253, 259, 285, 318
DdeI CTNAG 2 cut(s) 186, 281
DpnI GATC 2 cut(s) 182, 231
DpnII GATC 2 cut(s) 180, 229
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 273
Eco147I AGGCCT 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 294
EcoO109I RGGNCCY 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 273
Esp3I CGTCTC 1 cut(s) 291
FaeI CATG 1 cut(s) 241
FaiI YATR 2 cut(s) 239, 263
FatI CATG 1 cut(s) 237
Fnu4HI GCNGC 3 cut(s) 117, 129, 144
FokI GGATG 1 cut(s) 35
FriOI GRGCYC 1 cut(s) 166
Fsp4HI GCNGC 3 cut(s) 117, 129, 144
FspBI CTAG 1 cut(s) 53
GluI GCNGC 3 cut(s) 117, 129, 144
HaeIII GGCC 2 cut(s) 164, 318
Hin1II CATG 1 cut(s) 241
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HphI GGTGA 1 cut(s) 261
Hpy166II GTNNAC 2 cut(s) 72, 269
Hpy188I TCNGA 1 cut(s) 333
Hpy188III TCNNGA 2 cut(s) 93, 296
Hpy8I GTNNAC 2 cut(s) 72, 269
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 2 cut(s) 35, 93
HpyCH4V TGCA 1 cut(s) 223
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 125, 149, 170
HpyF3I CTNAG 2 cut(s) 186, 281
Hsp92II CATG 1 cut(s) 241
Kzo9I GATC 2 cut(s) 180, 229
LguI GCTCTTC 1 cut(s) 53
LpnPI CCDG 1 cut(s) 30
Lsp1109I GCAGC 2 cut(s) 115, 128
LweI GCATC 1 cut(s) 57
MaeI CTAG 1 cut(s) 53
MalI GATC 2 cut(s) 182, 231
MboI GATC 2 cut(s) 180, 229
MboII GAAGA 3 cut(s) 69, 70, 190
MhlI GDGCHC 2 cut(s) 65, 166
MnlI CCTC 6 cut(s) 100, 118, 133, 153, 303, 308
MseI TTAA 1 cut(s) 341
MwoI GCNNNNNNNGC 4 cut(s) 116, 125, 149, 170
NdeII GATC 2 cut(s) 180, 229
NlaIII CATG 1 cut(s) 241
NlaIV GGNNCC 1 cut(s) 164
NmeAIII GCCGAG 1 cut(s) 199
PaeR7I CTCGAG 1 cut(s) 294
PceI AGGCCT 1 cut(s) 318
PciSI GCTCTTC 1 cut(s) 53
PkrI GCNGC 3 cut(s) 118, 130, 145
PspN4I GGNNCC 1 cut(s) 164
PspOMI GGGCCC 1 cut(s) 162
PspPI GGNCC 3 cut(s) 162, 163, 277
SapI GCTCTTC 1 cut(s) 53
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 3 cut(s) 117, 129, 144
Sau3AI GATC 2 cut(s) 180, 229
Sau96I GGNCC 3 cut(s) 162, 163, 277
SduI GDGCHC 2 cut(s) 65, 166
SetI ASST 3 cut(s) 27, 71, 295
SfaNI GCATC 1 cut(s) 57
SfcI CTRYAG 2 cut(s) 198, 254
Sfr274I CTCGAG 1 cut(s) 294
SinI GGWCC 1 cut(s) 277
SlaI CTCGAG 1 cut(s) 294
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
SseBI AGGCCT 1 cut(s) 318
SsiI CCGC 1 cut(s) 143
SspMI CTAG 1 cut(s) 53
StuI AGGCCT 1 cut(s) 318
StyI CCWWGG 1 cut(s) 273
TaqI TCGA 3 cut(s) 94, 244, 295
TaqII GACCGA 1 cut(s) 112
TauI GCSGC 1 cut(s) 146
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TseI GCWGC 2 cut(s) 116, 128
VpaK11BI GGWCC 1 cut(s) 277
XhoI CTCGAG 1 cut(s) 294
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.