FvH4_2g19770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000776
Physical Location & Seq
Forward (+)
16713657 .. 16715298
1642 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19770.t1

Sequence Viewer

Length: 240 bp
ATGGAGGAGAGAATGTCCCCAAGACGATCGATTGCCAACTCCAGCAACCGTGGTAAGAGGGAGTTGGAGCACCACTCAGGGAGGAAACCTATCATTTACCGGGTGGCCGAGCTTAGGGATAAGGGTGCTTCATTACCAGTGGTTGACGTGTACCCGGTGACATACGACATCAACCAGCCTAAAGCTGTTGAGCATTATGAAAAGTTGAAGGAACAAGGTGCTATTGCCAAGACTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.06

Weight (kDa)

9.57

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 105
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 114
AflIII ACRYGT 1 cut(s) 147
AgsI TTSAA 1 cut(s) 208
AjiI CACGTC 1 cut(s) 148
AluBI AGCT 2 cut(s) 112, 185
AluI AGCT 2 cut(s) 112, 185
Alw21I GWGCWC 1 cut(s) 72
AoxI GGCC 1 cut(s) 105
AsuC2I CCSGG 2 cut(s) 101, 155
AsuHPI GGTGA 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 72
BcnI CCSGG 2 cut(s) 101, 155
Bme1390I CCNGG 2 cut(s) 101, 155
BmgBI CACGTC 1 cut(s) 148
BmrFI CCNGG 2 cut(s) 101, 155
BplI GAGNNNNNCTC 2 cut(s) 59, 91
BpmI CTGGAG 1 cut(s) 25
Bpu10I CCTNAGC 1 cut(s) 113
BpuMI CCSGG 2 cut(s) 101, 155
Bsa29I ATCGAT 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 49
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 137
BseCI ATCGAT 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 49
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 137
BseRI GAGGAG 1 cut(s) 20
Bsh1285I CGRYCG 1 cut(s) 29
BshFI GGCC 1 cut(s) 107
BshVI ATCGAT 1 cut(s) 29
BsiEI CGRYCG 1 cut(s) 29
BsiHKAI GWGCWC 1 cut(s) 72
BsiSI CCGG 2 cut(s) 100, 155
BslI CCNNNNNNNGG 1 cut(s) 114
BsnI GGCC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 26
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 1 cut(s) 89
BspDI ATCGAT 1 cut(s) 29
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 76, 113
BstDSI CCRYGG 1 cut(s) 49
BstKTI GATC 1 cut(s) 29
BstMBI GATC 1 cut(s) 26
BstMCI CGRYCG 1 cut(s) 29
BstSCI CCNGG 2 cut(s) 99, 153
Bsu15I ATCGAT 1 cut(s) 29
BsuRI GGCC 1 cut(s) 107
BsuTUI ATCGAT 1 cut(s) 29
BtgI CCRYGG 1 cut(s) 49
BtrI CACGTC 1 cut(s) 148
BtsIMutI CAGTG 1 cut(s) 144
ClaI ATCGAT 1 cut(s) 29
Csp6I GTAC 1 cut(s) 151
CviJI RGCY 4 cut(s) 107, 112, 178, 185
CviKI_1 RGCY 4 cut(s) 107, 112, 178, 185
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 2 cut(s) 76, 113
DpnI GATC 1 cut(s) 28
DpnII GATC 1 cut(s) 26
EaeI YGGCCR 1 cut(s) 105
FaiI YATR 2 cut(s) 163, 198
GsuI CTGGAG 1 cut(s) 25
HaeIII GGCC 1 cut(s) 107
HapII CCGG 2 cut(s) 100, 155
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HpaII CCGG 2 cut(s) 100, 155
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 2 cut(s) 145, 151
Hpy8I GTNNAC 2 cut(s) 145, 151
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4IV ACGT 1 cut(s) 147
HpyF3I CTNAG 2 cut(s) 76, 113
HpySE526I ACGT 1 cut(s) 147
Kzo9I GATC 1 cut(s) 26
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 6 cut(s) 55, 63, 113, 150, 168, 188
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 157
MalI GATC 1 cut(s) 28
MboI GATC 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 72
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 2 cut(s) 51, 75
MspI CCGG 2 cut(s) 100, 155
MspR9I CCNGG 2 cut(s) 101, 155
NciI CCSGG 2 cut(s) 101, 155
NdeII GATC 1 cut(s) 26
NmeAIII GCCGAG 1 cut(s) 133
NmuCI GTSAC 1 cut(s) 157
Ple19I CGATCG 1 cut(s) 29
PvuI CGATCG 1 cut(s) 29
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
Sau3AI GATC 1 cut(s) 26
ScrFI CCNGG 2 cut(s) 101, 155
SduI GDGCHC 1 cut(s) 72
SetI ASST 5 cut(s) 91, 114, 150, 187, 220
StyD4I CCNGG 2 cut(s) 99, 153
TaaI ACNGT 1 cut(s) 50
TaiI ACGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 29
TscAI CASTG 1 cut(s) 144
TseFI GTSAC 1 cut(s) 157
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 2 cut(s) 120, 213
TspRI CASTG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.