FvH4_2g34010

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000776
Physical Location & Seq
Forward (+)
25356720 .. 25360141
3422 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g34010.t1

Sequence Viewer

Length: 1305 bp
ATGCCGGTGCTCGGGAAAAGGAAAGCTCGGGAGGAGGCGGAGGAGGCGGAGGAGCGTTTGCGACTGGAGTGTGCGCAACAATACGACTCCTCTTCTGCCGGATCCAACACAACCACTCCGACGACGACGGCGCCATCCCTTGCTGAATCGGCTCCCTCTCTAACCGACGACGATGACGAGTCAGTGACCCGAGTATCAGAAACACCGTCTGAGGGTGCATCCCGGGTTGTCAGCGCTCGCCGGAAACCGAAGAAAAGCGGAGGACCTCCCCAGAAAGGCAACCGGGGTGTAGTGAACTGCTCAAAGGTGTCTGATATTGTGAAAAGCACGGGGAAGAAGATTGACTTGGACTTTGATTGGGAGTTTATTGATGGACCTCGTAATTCTGATGTATGTAGCCTTTTTGTCAATACTGTTGGAAGCATCATACGCAAAAGAGTGGCAATGAAGAAGGAATCGTGGTATGATTTAGACAAGGAGGAAAGGAAGAAGCTTTTTGACGGTCTCACTAAGCATGACTTGTCTGAGATTCACAAGCTCGGGGGGAGAGATATGATTCCGGAAGAGCTTTTGCACAGGCGGGATGAGTGGGAGTGGCTTTGCACTCATTTTGATTCGGATAAGTACAAGAGACGATCGGTTGCCAACTCCAGCAACCGTGGTAAGAAGGAGTTGGAGCACCGCTCAGGGAGGAAACCTATCATTTACCGGGTGACCGAGCTAAGGGATAAGGGTGCTTCATTACCGGTGGTTGACGTGTACCCGGTGACATACGACATCAACCAGCCTAAAGCTGCTGAGCATTATGAAAAGTTGAAGGAACAAGGTGCTATTGCTAAGACTTTGCAAAGCACTCAACACCCGGATATCCCACCGGATCAGCTGCCTCCTTTGGACTGGCCAACTCAACTAAGTGTTGTGCAAAATGCTATGGGAGAAACAAAAGGGTCTTACATTCGTGGTATTGGACGAGCAGGCGTCCTAGAGAAGAGCAGAAGGTCATCATCTTCCTCTTCATGCTCTCGACCGAATAATGAGGCGATGGCTGAGATAGTGGCTGTTAGAAAGGAGGCGGCTGAGGCACAAGAGAGGGCTGACAAAGCACAAGAGAGGGCTGAAAATGCCCAAAAGATCGCTGAGCAATCTGTTGCAGATTATCAACTGTTGAAGTTGCAAATGAAGCAAATCATGGCTCGAATAGGGCTACAGCCTATGTGTTCACCCTCGGTCCCAAGCCAACAACCTCGAGACGACGATGATGATAGGGGCCTTGACACTTCTCAGATTAGTTTAGGAAATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

435

Amino Acids

48.43

Weight (kDa)

7.06

Isoelectric Point (pI)

50.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 195 - 277 2.2e-06 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 75
AccB1I GGYRCC 1 cut(s) 130
AccBSI CCGCTC 1 cut(s) 684
AccIII TCCGGA 1 cut(s) 559
AciI CCGC 6 cut(s) 38, 47, 258, 580, 682, 1073
AclWI GGATC 3 cut(s) 96, 109, 885
AcoI YGGCCR 1 cut(s) 899
AcyI GRCGYC 2 cut(s) 131, 978
AfaI GTAC 2 cut(s) 626, 761
AfeI AGCGCT 1 cut(s) 235
AfiI CCNNNNNNNGG 4 cut(s) 11, 212, 275, 723
AflIII ACRYGT 1 cut(s) 756
AgeI ACCGGT 1 cut(s) 745
AgsI TTSAA 2 cut(s) 817, 1168
AjiI CACGTC 1 cut(s) 757
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AluBI AGCT 7 cut(s) 26, 493, 538, 568, 721, 794, 883
AluI AGCT 7 cut(s) 26, 493, 538, 568, 721, 794, 883
Alw21I GWGCWC 2 cut(s) 12, 681
Alw26I GTCTC 3 cut(s) 509, 625, 1242
AlwI GGATC 3 cut(s) 96, 109, 885
Ama87I CYCGRG 6 cut(s) 11, 27, 189, 222, 539, 1245
Aor13HI TCCGGA 1 cut(s) 559
Aor51HI AGCGCT 1 cut(s) 235
AoxI GGCC 2 cut(s) 899, 1267
ApeKI GCWGC 2 cut(s) 794, 883
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
AsiGI ACCGGT 1 cut(s) 745
AspLEI GCGC 3 cut(s) 76, 133, 236
AspS9I GGNCC 4 cut(s) 263, 374, 1228, 1267
AsuC2I CCSGG 6 cut(s) 223, 224, 284, 710, 764, 863
AsuHPI GGTGA 3 cut(s) 724, 778, 1212
AvaI CYCGRG 6 cut(s) 11, 27, 189, 222, 539, 1245
AvaII GGWCC 3 cut(s) 263, 374, 1228
BaeI ACNNNNGTAYC 2 cut(s) 177, 210
BalI TGGCCA 1 cut(s) 901
BamHI GGATCC 1 cut(s) 101
BanI GGYRCC 1 cut(s) 130
Bbv12I GWGCWC 2 cut(s) 12, 681
BbvCI CCTCAGC 1 cut(s) 1077
BbvI GCAGC 2 cut(s) 781, 870
BccI CCATC 3 cut(s) 142, 365, 1036
BceAI ACGGC 1 cut(s) 144
BcnI CCSGG 6 cut(s) 223, 224, 284, 710, 764, 863
BcoDI GTCTC 3 cut(s) 509, 625, 1242
BfaI CTAG 1 cut(s) 983
BfmI CTRYAG 1 cut(s) 1205
BfoI RGCGCY 2 cut(s) 134, 237
BisI GCNGC 3 cut(s) 795, 884, 1074
BlpI GCTNAGC 2 cut(s) 798, 1137
BlsI GCNGC 3 cut(s) 796, 885, 1075
Bme1390I CCNGG 6 cut(s) 223, 224, 284, 710, 764, 863
Bme18I GGWCC 3 cut(s) 263, 374, 1228
BmeT110I CYCGRG 6 cut(s) 11, 27, 189, 222, 539, 1245
BmgBI CACGTC 1 cut(s) 757
BmgT120I GGNCC 4 cut(s) 263, 374, 1228, 1267
BmiI GGNNCC 5 cut(s) 103, 132, 153, 1230, 1268
BmrFI CCNGG 6 cut(s) 223, 224, 284, 710, 764, 863
BmsI GCATC 2 cut(s) 227, 432
BplI GAGNNNNNCTC 2 cut(s) 668, 700
BpmI CTGGAG 2 cut(s) 86, 634
Bpu10I CCTNAGC 3 cut(s) 685, 722, 1077
Bpu1102I GCTNAGC 2 cut(s) 798, 1137
BpuMI CCSGG 6 cut(s) 223, 224, 284, 710, 764, 863
BsaHI GRCGYC 2 cut(s) 131, 978
BsaI GGTCTC 1 cut(s) 509
BsaJI CCNNGG 4 cut(s) 222, 283, 658, 1224
BsaWI WCCGGW 3 cut(s) 559, 745, 874
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
Bsc4I CCNNNNNNNGG 4 cut(s) 11, 212, 275, 723
Bse118I RCCGGY 2 cut(s) 4, 745
Bse1I ACTGG 2 cut(s) 69, 902
Bse3DI GCAATG 1 cut(s) 450
BseAI TCCGGA 1 cut(s) 559
BseDI CCNNGG 4 cut(s) 222, 283, 658, 1224
BseGI GGATG 3 cut(s) 134, 218, 589
BseLI CCNNNNNNNGG 4 cut(s) 11, 212, 275, 723
BseMI GCAATG 1 cut(s) 450
BseMII CTCAG 8 cut(s) 201, 516, 699, 789, 1038, 1068, 1128, 1295
BseNI ACTGG 2 cut(s) 69, 902
BseRI GAGGAG 4 cut(s) 47, 56, 65, 79
BseXI GCAGC 2 cut(s) 781, 870
Bsh1285I CGRYCG 2 cut(s) 638, 1028
BshFI GGCC 2 cut(s) 901, 1269
BshNI GGYRCC 1 cut(s) 130
BshTI ACCGGT 1 cut(s) 745
BsiEI CGRYCG 2 cut(s) 638, 1028
BsiHKAI GWGCWC 2 cut(s) 12, 681
BsiHKCI CYCGRG 6 cut(s) 11, 27, 189, 222, 539, 1245
BslFI GGGAC 1 cut(s) 1214
BslI CCNNNNNNNGG 4 cut(s) 11, 212, 275, 723
BsmAI GTCTC 3 cut(s) 509, 625, 1242
BsmBI CGTCTC 2 cut(s) 625, 1242
BsmFI GGGAC 1 cut(s) 1214
BsnI GGCC 2 cut(s) 901, 1269
Bso31I GGTCTC 1 cut(s) 509
BsoBI CYCGRG 6 cut(s) 11, 27, 189, 222, 539, 1245
Bsp1286I GDGCHC 2 cut(s) 12, 681
Bsp13I TCCGGA 1 cut(s) 559
Bsp143I GATC 4 cut(s) 101, 635, 877, 1131
Bsp1720I GCTNAGC 2 cut(s) 798, 1137
BspACI CCGC 6 cut(s) 38, 47, 258, 580, 682, 1073
BspANI GGCC 2 cut(s) 901, 1269
BspCNI CTCAG 8 cut(s) 202, 517, 698, 790, 1039, 1069, 1129, 1294
BspEI TCCGGA 1 cut(s) 559
BspLI GGNNCC 5 cut(s) 103, 132, 153, 1230, 1268
BspPI GGATC 3 cut(s) 96, 109, 885
BspQI GCTCTTC 2 cut(s) 558, 983
BspT107I GGYRCC 1 cut(s) 130
BspTNI GGTCTC 1 cut(s) 509
BsrBI CCGCTC 1 cut(s) 684
BsrDI GCAATG 1 cut(s) 450
BsrFI RCCGGY 2 cut(s) 4, 745
BsrI ACTGG 2 cut(s) 69, 902
BssAI RCCGGY 2 cut(s) 4, 745
BssECI CCNNGG 4 cut(s) 222, 283, 658, 1224
BssMI GATC 4 cut(s) 101, 635, 877, 1131
BssNI GRCGYC 2 cut(s) 131, 978
Bst4CI ACNGT 5 cut(s) 207, 415, 503, 659, 1164
Bst6I CTCTTC 4 cut(s) 97, 558, 983, 1018
BstACI GRCGYC 2 cut(s) 131, 978
BstC8I GCNNGC 2 cut(s) 238, 976
BstDSI CCRYGG 1 cut(s) 658
BstEII GGTNACC 1 cut(s) 712
BstF5I GGATG 3 cut(s) 134, 218, 589
BstH2I RGCGCY 2 cut(s) 134, 237
BstHHI GCGC 3 cut(s) 76, 133, 236
BstKTI GATC 4 cut(s) 104, 638, 880, 1134
BstMAI GTCTC 3 cut(s) 509, 625, 1242
BstMBI GATC 4 cut(s) 101, 635, 877, 1131
BstMCI CGRYCG 2 cut(s) 638, 1028
BstMWI GCNNNNNNNGC 7 cut(s) 44, 149, 429, 1079, 1100, 1121, 1180
BstPI GGTNACC 1 cut(s) 712
BstSCI CCNGG 6 cut(s) 221, 222, 282, 708, 762, 861
BstSFI CTRYAG 1 cut(s) 1205
BstV1I GCAGC 2 cut(s) 781, 870
BstX2I RGATCY 1 cut(s) 101
BstYI RGATCY 1 cut(s) 101
BsuRI GGCC 2 cut(s) 901, 1269
BtgI CCRYGG 1 cut(s) 658
BtgZI GCGATG 1 cut(s) 1055
BtrI CACGTC 1 cut(s) 757
BtsCI GGATG 3 cut(s) 134, 218, 589
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 2 cut(s) 238, 976
CfoI GCGC 3 cut(s) 76, 133, 236
Cfr10I RCCGGY 2 cut(s) 4, 745
Cfr13I GGNCC 4 cut(s) 263, 374, 1228, 1267
Cfr9I CCCGGG 1 cut(s) 222
CseI GACGC 1 cut(s) 967
Csp6I GTAC 2 cut(s) 625, 760
CspAI ACCGGT 1 cut(s) 745
CviAII CATG 3 cut(s) 515, 1017, 1189
CviQI GTAC 2 cut(s) 625, 760
DinI GGCGCC 1 cut(s) 132
DpnI GATC 4 cut(s) 103, 637, 879, 1133
DpnII GATC 4 cut(s) 101, 635, 877, 1131
EaeI YGGCCR 1 cut(s) 899
Eam1104I CTCTTC 4 cut(s) 97, 558, 983, 1018
EarI CTCTTC 4 cut(s) 97, 558, 983, 1018
EciI GGCGGA 2 cut(s) 53, 62
Eco31I GGTCTC 1 cut(s) 509
Eco32I GATATC 1 cut(s) 868
Eco47I GGWCC 3 cut(s) 263, 374, 1228
Eco47III AGCGCT 1 cut(s) 235
Eco88I CYCGRG 6 cut(s) 11, 27, 189, 222, 539, 1245
Eco91I GGTNACC 1 cut(s) 712
EcoO109I RGGNCCY 2 cut(s) 263, 1267
EcoO65I GGTNACC 1 cut(s) 712
EcoRV GATATC 1 cut(s) 868
EgeI GGCGCC 1 cut(s) 132
EheI GGCGCC 1 cut(s) 132
Esp3I CGTCTC 2 cut(s) 625, 1242
FaeI CATG 3 cut(s) 518, 1020, 1192
FalI AAGNNNNNCTT 4 cut(s) 329, 361, 503, 535
FaqI GGGAC 1 cut(s) 1214
FatI CATG 3 cut(s) 514, 1016, 1188
FauI CCCGC 1 cut(s) 573
Fnu4HI GCNGC 3 cut(s) 795, 884, 1074
FokI GGATG 3 cut(s) 121, 205, 596
Fsp4HI GCNGC 3 cut(s) 795, 884, 1074
FspBI CTAG 1 cut(s) 983
FspI TGCGCA 1 cut(s) 75
GlaI GCGC 3 cut(s) 75, 132, 235
GluI GCNGC 3 cut(s) 795, 884, 1074
GsuI CTGGAG 2 cut(s) 86, 634
HaeII RGCGCY 2 cut(s) 134, 237
HaeIII GGCC 2 cut(s) 901, 1269
HgaI GACGC 1 cut(s) 967
HhaI GCGC 3 cut(s) 76, 133, 236
Hin1I GRCGYC 2 cut(s) 131, 978
Hin1II CATG 3 cut(s) 518, 1020, 1192
Hin6I GCGC 3 cut(s) 74, 131, 234
HinP1I GCGC 3 cut(s) 74, 131, 234
HincII GTYRAC 1 cut(s) 754
HindII GTYRAC 1 cut(s) 754
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 7 cut(s) 86, 146, 179, 455, 529, 556, 614
HphI GGTGA 3 cut(s) 724, 778, 1212
Hpy166II GTNNAC 4 cut(s) 295, 754, 760, 1220
Hpy188I TCNGA 8 cut(s) 120, 199, 211, 313, 388, 526, 619, 1284
Hpy188III TCNNGA 5 cut(s) 13, 29, 560, 1023, 1247
Hpy8I GTNNAC 4 cut(s) 295, 754, 760, 1220
Hpy99I CGWCG 6 cut(s) 124, 127, 130, 170, 173, 1256
HpyAV CCTTC 4 cut(s) 445, 661, 811, 990
HpyCH4III ACNGT 5 cut(s) 207, 415, 503, 659, 1164
HpyCH4IV ACGT 1 cut(s) 756
HpyCH4V TGCA 7 cut(s) 218, 574, 603, 847, 922, 1151, 1174
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 149, 429, 1079, 1100, 1121, 1180
HpySE526I ACGT 1 cut(s) 756
Hsp92I GRCGYC 2 cut(s) 131, 978
Hsp92II CATG 3 cut(s) 518, 1020, 1192
HspAI GCGC 3 cut(s) 74, 131, 234
KasI GGCGCC 1 cut(s) 130
Kpn2I TCCGGA 1 cut(s) 559
Kzo9I GATC 4 cut(s) 101, 635, 877, 1131
LguI GCTCTTC 2 cut(s) 558, 983
LmnI GCTCC 3 cut(s) 52, 157, 676
Lsp1109I GCAGC 2 cut(s) 781, 870
LweI GCATC 2 cut(s) 227, 432
MaeI CTAG 1 cut(s) 983
MaeII ACGT 1 cut(s) 756
MaeIII GTNAC 3 cut(s) 184, 712, 766
MalI GATC 4 cut(s) 103, 637, 879, 1133
MbiI CCGCTC 1 cut(s) 684
MboI GATC 4 cut(s) 101, 635, 877, 1131
MflI RGATCY 1 cut(s) 101
MhlI GDGCHC 2 cut(s) 12, 681
MlsI TGGCCA 1 cut(s) 901
MluCI AATT 1 cut(s) 382
MluNI TGGCCA 1 cut(s) 901
Mly113I GGCGCC 1 cut(s) 131
MlyI GAGTC 2 cut(s) 80, 188
MmeI TCCRAC 4 cut(s) 129, 143, 397, 654
Mox20I TGGCCA 1 cut(s) 901
MroI TCCGGA 1 cut(s) 559
MscI TGGCCA 1 cut(s) 901
Msp20I TGGCCA 1 cut(s) 901
MspA1I CMGCKG 1 cut(s) 883
MspR9I CCNGG 6 cut(s) 223, 224, 284, 710, 764, 863
MwoI GCNNNNNNNGC 7 cut(s) 44, 149, 429, 1079, 1100, 1121, 1180
NarI GGCGCC 1 cut(s) 131
NciI CCSGG 6 cut(s) 223, 224, 284, 710, 764, 863
NdeII GATC 4 cut(s) 101, 635, 877, 1131
NlaIII CATG 3 cut(s) 518, 1020, 1192
NlaIV GGNNCC 5 cut(s) 103, 132, 153, 1230, 1268
NmuCI GTSAC 3 cut(s) 184, 712, 766
NsbI TGCGCA 1 cut(s) 75
PaeR7I CTCGAG 1 cut(s) 1245
PciSI GCTCTTC 2 cut(s) 558, 983
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PfeI GAWTC 5 cut(s) 146, 455, 529, 556, 614
PinAI ACCGGT 1 cut(s) 745
PkrI GCNGC 3 cut(s) 796, 885, 1075
Ple19I CGATCG 1 cut(s) 638
PleI GAGTC 2 cut(s) 80, 187
PluTI GGCGCC 1 cut(s) 134
PpsI GAGTC 2 cut(s) 80, 187
PpuMI RGGWCCY 1 cut(s) 263
Psp5II RGGWCCY 1 cut(s) 263
PspEI GGTNACC 1 cut(s) 712
PspN4I GGNNCC 5 cut(s) 103, 132, 153, 1230, 1268
PspPI GGNCC 4 cut(s) 263, 374, 1228, 1267
PspPPI RGGWCCY 1 cut(s) 263
PsuI RGATCY 1 cut(s) 101
PvuI CGATCG 1 cut(s) 638
PvuII CAGCTG 1 cut(s) 883
RsaI GTAC 2 cut(s) 626, 761
RsaNI GTAC 2 cut(s) 625, 760
SapI GCTCTTC 2 cut(s) 558, 983
SatI GCNGC 3 cut(s) 795, 884, 1074
Sau3AI GATC 4 cut(s) 101, 635, 877, 1131
Sau96I GGNCC 4 cut(s) 263, 374, 1228, 1267
SchI GAGTC 2 cut(s) 80, 188
ScrFI CCNGG 6 cut(s) 223, 224, 284, 710, 764, 863
SduI GDGCHC 2 cut(s) 12, 681
SfaNI GCATC 2 cut(s) 227, 432
SfcI CTRYAG 1 cut(s) 1205
SfoI GGCGCC 1 cut(s) 132
Sfr274I CTCGAG 1 cut(s) 1245
SinI GGWCC 3 cut(s) 263, 374, 1228
SlaI CTCGAG 1 cut(s) 1245
SmaI CCCGGG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 1245
SmoI CTYRAG 1 cut(s) 1245
Sse9I AATT 1 cut(s) 382
SsiI CCGC 6 cut(s) 38, 47, 258, 580, 682, 1073
SspDI GGCGCC 1 cut(s) 130
SspMI CTAG 1 cut(s) 983
StyD4I CCNGG 6 cut(s) 221, 222, 282, 708, 762, 861
TaaI ACNGT 5 cut(s) 207, 415, 503, 659, 1164
TaiI ACGT 1 cut(s) 759
TaqI TCGA 3 cut(s) 1024, 1195, 1246
TaqII GACCGA 3 cut(s) 731, 1042, 1216
TasI AATT 1 cut(s) 382
TatI WGTACW 1 cut(s) 624
TauI GCSGC 1 cut(s) 1076
TfiI GAWTC 5 cut(s) 146, 455, 529, 556, 614
TscAI CASTG 1 cut(s) 189
TseFI GTSAC 3 cut(s) 184, 712, 766
TseI GCWGC 2 cut(s) 794, 883
Tsp45I GTSAC 3 cut(s) 184, 712, 766
TspDTI ATGAA 5 cut(s) 461, 729, 822, 1005, 1193
TspMI CCCGGG 1 cut(s) 222
TspRI CASTG 1 cut(s) 189
VpaK11BI GGWCC 3 cut(s) 263, 374, 1228
XhoI CTCGAG 1 cut(s) 1245
XmaI CCCGGG 1 cut(s) 222
XspI CTAG 1 cut(s) 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.