Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000776

Physical Location & Seq

Genomic Coordinates Forward (+)

11178902 .. 11179696

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18892.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCACCATGCACCATGTCGAAGAAAAGGTCCAGGGAGATTGCGTCGGAGAGATTACGATCGGCTTGTGCTGCCCAACTTGGTTCCGGCACGACGGCGAGTACGGCGAGGCCGACGGGAGATGTTGCTGAGCAGTCACCGACGGGAGATGGTGAAACCACTCCACCTCCACCACCAGCCTCGATTGCCTCTACAGCTCCTCCACCACCAGCCTCGATTGCGTCTACAACTCCTCCACTGGATGAGGACGACATAGACGATGTCGCCCCAGAAGCTCAGGCGACGCTGTCCGATGGTTGCAGTGTTCGACGTGGTACTCAGAAGTCCACCGAACCTCCCCCAAAACGCCGACGAGGGTTCGGCAACCTGGATAAGGTGAAACGAATTGTGAAAGTTTCAGGCTTGATCGAAGTTGTGTATGACGACTTCATCAGAGGATCGTCTTCATCATCAGTGAACAGCCTCTTGGTCAATAGCATTGGTTGCATAATTCGATCCAAAGTCAGATTGTTGGCCGGAAACTGGGAATGCATCGGTGACTCTGAGAAGAAGAAGTTGATAGACGGGCTTACGTTTAGTAATGATGATGATGATGTGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

21.04

Weight (kDa)

5.33

Isoelectric Point (pI)

67.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000776)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15161 FvH4_1g18892 FvH4_1g18893 FvH4_1g20162 FvH4_1g26653 FvH4_1g29050 FvH4_1g29090 FvH4_1g29091 FvH4_2g00890 FvH4_2g00890 FvH4_2g14380 FvH4_2g17540 FvH4_2g19090 FvH4_2g19770 FvH4_2g30343 FvH4_2g30344 FvH4_2g30380 FvH4_2g34010 FvH4_3g18731 FvH4_3g21360 FvH4_3g23880 FvH4_3g26330 FvH4_3g26702 FvH4_3g30710 FvH4_3g30880 FvH4_3g31911 FvH4_3g32572 FvH4_3g38790 FvH4_3g45880 FvH4_4g03280 FvH4_4g08270 FvH4_4g08610 FvH4_4g08911 FvH4_4g10030 FvH4_4g10220 FvH4_4g10221 FvH4_4g10232 FvH4_4g10233 FvH4_4g10364 FvH4_4g14460 FvH4_4g16210 FvH4_4g27150 FvH4_5g06880 FvH4_5g13180 FvH4_5g19450 FvH4_5g20620 FvH4_5g22931 FvH4_5g24202 FvH4_5g24970 FvH4_5g31450 FvH4_5g31660 FvH4_5g32550 FvH4_6g06811 FvH4_6g17172 FvH4_6g17190 FvH4_6g18010 FvH4_6g21800 FvH4_6g21871 FvH4_6g23101 FvH4_6g23360 FvH4_6g24310 FvH4_6g30100 FvH4_6g31520 FvH4_6g31530 FvH4_6g34820 FvH4_6g35510 FvH4_6g40350 FvH4_6g40360 FvH4_7g09590 FvH4_7g16000

Species

Orthologous Gene IDs

fragaria_vesca

FvH4_1g15161 FvH4_1g18892 FvH4_1g18893 FvH4_1g20162 FvH4_1g26653 FvH4_1g29050 FvH4_1g29090 FvH4_1g29091 FvH4_2g00890 FvH4_2g00890 FvH4_2g14380 FvH4_2g17540 FvH4_2g19090 FvH4_2g19770 FvH4_2g30343 FvH4_2g30344 FvH4_2g30380 FvH4_2g34010 FvH4_3g18731 FvH4_3g21360 FvH4_3g23880 FvH4_3g26330 FvH4_3g26702 FvH4_3g30710 FvH4_3g30880 FvH4_3g31911 FvH4_3g32572 FvH4_3g38790 FvH4_3g45880 FvH4_4g03280 FvH4_4g08270 FvH4_4g08610 FvH4_4g08911 FvH4_4g10030 FvH4_4g10220 FvH4_4g10221 FvH4_4g10232 FvH4_4g10233 FvH4_4g10364 FvH4_4g14460 FvH4_4g16210 FvH4_4g27150 FvH4_5g06880 FvH4_5g13180 FvH4_5g19450 FvH4_5g20620 FvH4_5g22931 FvH4_5g24202 FvH4_5g24970 FvH4_5g31450 FvH4_5g31660 FvH4_5g32550 FvH4_6g06811 FvH4_6g17172 FvH4_6g17190 FvH4_6g18010 FvH4_6g21800 FvH4_6g21871 FvH4_6g23101 FvH4_6g23360 FvH4_6g24310 FvH4_6g30100 FvH4_6g31520 FvH4_6g31530 FvH4_6g34820 FvH4_6g35510 FvH4_6g40350 FvH4_6g40360 FvH4_7g09590 FvH4_7g16000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	224
AclWI	GGATC	2 cut(s)	445, 489
AcoI	YGGCCR	1 cut(s)	513
AfaI	GTAC	2 cut(s)	103, 316
AfiI	CCNNNNNNNGG	2 cut(s)	373, 522
AjiI	CACGTC	1 cut(s)	311
AjnI	CCWGG	2 cut(s)	32, 366
AjuI	GAANNNNNNNTTGG	2 cut(s)	449, 481
AluBI	AGCT	2 cut(s)	197, 275
AluI	AGCT	2 cut(s)	197, 275
AlwI	GGATC	2 cut(s)	445, 489
AoxI	GGCC	2 cut(s)	110, 513
ApeKI	GCWGC	1 cut(s)	71
ArsI	GACNNNNNNTTYG	2 cut(s)	14, 46
AspS9I	GGNCC	1 cut(s)	30
AsuHPI	GGTGA	4 cut(s)	129, 164, 388, 548
AvaII	GGWCC	1 cut(s)	30
BanI	GGYRCC	1 cut(s)	4
BarI	GAAGNNNNNNTAC	2 cut(s)	410, 442
BbsI	GAAGAC	1 cut(s)	435
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	2 cut(s)	143, 287
BceAI	ACGGC	2 cut(s)	111, 120
BciT130I	CCWGG	2 cut(s)	34, 368
BfmI	CTRYAG	1 cut(s)	192
BisI	GCNGC	1 cut(s)	72
BlpI	GCTNAGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	73
Bme1390I	CCNGG	2 cut(s)	34, 368
Bme18I	GGWCC	1 cut(s)	30
BmgBI	CACGTC	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	2 cut(s)	6, 85
BmrFI	CCNGG	2 cut(s)	34, 368
BmrI	ACTGGG	1 cut(s)	532
BmsI	GCATC	1 cut(s)	540
BmuI	ACTGGG	1 cut(s)	532
BpiI	GAAGAC	1 cut(s)	435
Bpu10I	CCTNAGC	1 cut(s)	276
Bpu1102I	GCTNAGC	1 cut(s)	129
BsaBI	GATNNNNATC	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	373, 522
Bse1I	ACTGG	2 cut(s)	243, 527
Bse8I	GATNNNNATC	1 cut(s)	58
BseBI	CCWGG	2 cut(s)	34, 368
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	247
BseJI	GATNNNNATC	1 cut(s)	58
BseLI	CCNNNNNNNGG	2 cut(s)	373, 522
BseMII	CTCAG	4 cut(s)	120, 290, 332, 534
BseNI	ACTGG	2 cut(s)	243, 527
BseRI	GAGGAG	2 cut(s)	189, 222
BseXI	GCAGC	1 cut(s)	58
Bsh1285I	CGRYCG	1 cut(s)	62
BshFI	GGCC	2 cut(s)	112, 515
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	62
BsiSI	CCGG	2 cut(s)	87, 516
BslI	CCNNNNNNNGG	2 cut(s)	373, 522
BsmI	GAATGC	1 cut(s)	533
BsnI	GGCC	2 cut(s)	112, 515
Bsp143I	GATC	4 cut(s)	59, 405, 437, 494
Bsp1720I	GCTNAGC	1 cut(s)	129
BspANI	GGCC	2 cut(s)	112, 515
BspCNI	CTCAG	4 cut(s)	121, 289, 331, 535
BspLI	GGNNCC	2 cut(s)	6, 85
BspPI	GGATC	2 cut(s)	445, 489
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	243, 527
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	4 cut(s)	59, 405, 437, 494
Bst2UI	CCWGG	2 cut(s)	34, 368
BstAPI	GCANNNNNTGC	1 cut(s)	483
BstDEI	CTNAG	4 cut(s)	129, 276, 318, 543
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	4 cut(s)	62, 408, 440, 497
BstMBI	GATC	4 cut(s)	59, 405, 437, 494
BstMCI	CGRYCG	1 cut(s)	62
BstMWI	GCNNNNNNNGC	7 cut(s)	71, 104, 185, 194, 218, 272, 483
BstNI	CCWGG	2 cut(s)	34, 368
BstSCI	CCNGG	2 cut(s)	32, 366
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	58
BstV2I	GAAGAC	1 cut(s)	435
BsuRI	GGCC	2 cut(s)	112, 515
BtrI	CACGTC	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	247
BtsI	GCAGTG	1 cut(s)	307
BtsIMutI	CAGTG	3 cut(s)	236, 307, 459
Cfr13I	GGNCC	1 cut(s)	30
CseI	GACGC	3 cut(s)	33, 210, 292
Csp6I	GTAC	2 cut(s)	102, 315
CviAII	CATG	2 cut(s)	9, 16
CviQI	GTAC	2 cut(s)	102, 315
DdeI	CTNAG	4 cut(s)	129, 276, 318, 543
DpnI	GATC	4 cut(s)	61, 407, 439, 496
DpnII	GATC	4 cut(s)	59, 405, 437, 494
EaeI	YGGCCR	1 cut(s)	513
Eco47I	GGWCC	1 cut(s)	30
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoRII	CCWGG	2 cut(s)	32, 366
EcoT22I	ATGCAT	1 cut(s)	533
FaeI	CATG	2 cut(s)	12, 19
FaiI	YATR	6 cut(s)	10, 17, 254, 420, 488, 601
FatI	CATG	2 cut(s)	8, 15
FblI	GTMKAC	1 cut(s)	224
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	72
HaeIII	GGCC	2 cut(s)	112, 515
HapII	CCGG	2 cut(s)	87, 516
HgaI	GACGC	3 cut(s)	33, 210, 292
Hin1II	CATG	2 cut(s)	12, 19
HinfI	GANTC	1 cut(s)	539
HpaII	CCGG	2 cut(s)	87, 516
HphI	GGTGA	4 cut(s)	129, 164, 388, 548
Hpy166II	GTNNAC	3 cut(s)	225, 327, 457
Hpy188I	TCNGA	6 cut(s)	49, 292, 321, 434, 506, 544
Hpy8I	GTNNAC	3 cut(s)	225, 327, 457
Hpy99I	CGWCG	7 cut(s)	49, 97, 118, 145, 286, 312, 354
HpyCH4IV	ACGT	2 cut(s)	310, 572
HpyCH4V	TGCA	4 cut(s)	12, 300, 486, 531
HpyF10VI	GCNNNNNNNGC	7 cut(s)	71, 104, 185, 194, 218, 272, 483
HpyF3I	CTNAG	4 cut(s)	129, 276, 318, 543
HpySE526I	ACGT	2 cut(s)	310, 572
Hsp92II	CATG	2 cut(s)	12, 19
Kzo9I	GATC	4 cut(s)	59, 405, 437, 494
LmnI	GCTCC	1 cut(s)	202
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	1 cut(s)	540
MaeII	ACGT	2 cut(s)	310, 572
MaeIII	GTNAC	2 cut(s)	135, 536
MalI	GATC	4 cut(s)	61, 407, 439, 496
MboI	GATC	4 cut(s)	59, 405, 437, 494
MboII	GAAGA	4 cut(s)	34, 435, 559, 562
MluCI	AATT	2 cut(s)	384, 489
MlyI	GAGTC	1 cut(s)	533
MmeI	TCCRAC	1 cut(s)	27
Mph1103I	ATGCAT	1 cut(s)	533
MspI	CCGG	2 cut(s)	87, 516
MspR9I	CCNGG	2 cut(s)	34, 368
Mva1269I	GAATGC	1 cut(s)	533
MvaI	CCWGG	2 cut(s)	34, 368
MwoI	GCNNNNNNNGC	7 cut(s)	71, 104, 185, 194, 218, 272, 483
NdeII	GATC	4 cut(s)	59, 405, 437, 494
NlaIII	CATG	2 cut(s)	12, 19
NlaIV	GGNNCC	2 cut(s)	6, 85
NmuCI	GTSAC	2 cut(s)	135, 536
NsiI	ATGCAT	1 cut(s)	533
PcsI	WCGNNNNNNNCGW	2 cut(s)	110, 255
PctI	GAATGC	1 cut(s)	533
PflFI	GACNNNGTC	2 cut(s)	260, 286
PkrI	GCNGC	1 cut(s)	73
Ple19I	CGATCG	1 cut(s)	62
PleI	GAGTC	1 cut(s)	533
PpsI	GAGTC	1 cut(s)	533
Psp6I	CCWGG	2 cut(s)	32, 366
PspGI	CCWGG	2 cut(s)	32, 366
PspN4I	GGNNCC	2 cut(s)	6, 85
PspPI	GGNCC	1 cut(s)	30
PsyI	GACNNNGTC	2 cut(s)	260, 286
PvuI	CGATCG	1 cut(s)	62
RsaI	GTAC	2 cut(s)	103, 316
RsaNI	GTAC	2 cut(s)	102, 315
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	4 cut(s)	59, 405, 437, 494
Sau96I	GGNCC	1 cut(s)	30
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	2 cut(s)	34, 368
SetI	ASST	9 cut(s)	32, 169, 199, 277, 313, 337, 369, 378, 575
SfaNI	GCATC	1 cut(s)	540
SfcI	CTRYAG	1 cut(s)	192
SinI	GGWCC	1 cut(s)	30
Sse9I	AATT	2 cut(s)	384, 489
StyD4I	CCNGG	2 cut(s)	32, 366
TaiI	ACGT	2 cut(s)	313, 575
TaqI	TCGA	6 cut(s)	20, 182, 215, 307, 408, 493
TasI	AATT	2 cut(s)	384, 489
TscAI	CASTG	3 cut(s)	243, 307, 459
TseFI	GTSAC	2 cut(s)	135, 536
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	2 cut(s)	135, 536
TspDTI	ATGAA	2 cut(s)	418, 435
TspRI	CASTG	3 cut(s)	243, 307, 459
Tth111I	GACNNNGTC	2 cut(s)	260, 286
VpaK11BI	GGWCC	1 cut(s)	30
XagI	CCTNNNNNAGG	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	224
Zsp2I	ATGCAT	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.