FvH4_6g17172

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000776
Physical Location & Seq
Forward (+)
11167302 .. 11169470
2169 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g17172.t1

Sequence Viewer

Length: 375 bp
ATGAACTTGGGAGTTATTTGTACACCCTGTTTTGATCATGTACTTGGTCTTGTGCATAGACTATCGGTTGCCAACTCCAGCAATCGTGGTAAGAAGGAGTTGGAGCACCACTCAGGGAGGAAACCTATCATTTACCGGGTGGCTGAGCTTAGGGATAAGGCTACTTCATTACCGGTGGTTGAGGTGTACCCAGTGATATACGACATCAACCAGCCTAAAGCTGCTGAGCATCATGAAAAGTTGAAGGAACAAGCTGCTATTGCCAAGACTTTGCAGAACACTCAACACCCGAACATCCCACCGGATCAGCTACCTCCTTTGGACTGGTCAACTCAACTAAGTATTGTGAAAAACGCTATGGGAGAAACAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.87

Weight (kDa)

8.59

Isoelectric Point (pI)

25.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 312
AfaI GTAC 3 cut(s) 22, 42, 188
AgeI ACCGGT 1 cut(s) 172
AgsI TTSAA 1 cut(s) 244
AluBI AGCT 4 cut(s) 148, 221, 254, 310
AluI AGCT 4 cut(s) 148, 221, 254, 310
Alw21I GWGCWC 1 cut(s) 108
AlwI GGATC 1 cut(s) 312
ApeKI GCWGC 2 cut(s) 221, 254
AsiGI ACCGGT 1 cut(s) 172
AsuC2I CCSGG 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 2 cut(s) 208, 241
BclI TGATCA 1 cut(s) 34
BcnI CCSGG 1 cut(s) 137
BisI GCNGC 2 cut(s) 222, 255
BlpI GCTNAGC 2 cut(s) 144, 225
BlsI GCNGC 2 cut(s) 223, 256
Bme1390I CCNGG 1 cut(s) 137
BmrFI CCNGG 1 cut(s) 137
BmrI ACTGGG 1 cut(s) 185
BmsI GCATC 1 cut(s) 238
BmuI ACTGGG 1 cut(s) 185
BplI GAGNNNNNCTC 2 cut(s) 95, 127
BpmI CTGGAG 1 cut(s) 61
Bpu10I CCTNAGC 1 cut(s) 149
Bpu1102I GCTNAGC 2 cut(s) 144, 225
BpuMI CCSGG 1 cut(s) 137
BsaWI WCCGGW 2 cut(s) 172, 301
Bse118I RCCGGY 1 cut(s) 172
Bse1I ACTGG 2 cut(s) 191, 329
BseGI GGATG 1 cut(s) 294
BseMII CTCAG 3 cut(s) 126, 135, 216
BseNI ACTGG 2 cut(s) 191, 329
BseXI GCAGC 2 cut(s) 208, 241
BshTI ACCGGT 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 108
BsiSI CCGG 3 cut(s) 136, 173, 302
Bsp1286I GDGCHC 1 cut(s) 108
Bsp1407I TGTACA 1 cut(s) 20
Bsp143I GATC 2 cut(s) 34, 304
Bsp1720I GCTNAGC 2 cut(s) 144, 225
BspCNI CTCAG 3 cut(s) 125, 136, 217
BspHI TCATGA 1 cut(s) 232
BspPI GGATC 1 cut(s) 312
BsrFI RCCGGY 1 cut(s) 172
BsrGI TGTACA 1 cut(s) 20
BsrI ACTGG 2 cut(s) 191, 329
BssAI RCCGGY 1 cut(s) 172
BssMI GATC 2 cut(s) 34, 304
BstAUI TGTACA 1 cut(s) 20
BstDEI CTNAG 5 cut(s) 112, 144, 149, 225, 338
BstF5I GGATG 1 cut(s) 294
BstKTI GATC 2 cut(s) 37, 307
BstMBI GATC 2 cut(s) 34, 304
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 135
BstV1I GCAGC 2 cut(s) 208, 241
BtsCI GGATG 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 198
CciI TCATGA 1 cut(s) 232
Cfr10I RCCGGY 1 cut(s) 172
Csp6I GTAC 3 cut(s) 21, 41, 187
CspAI ACCGGT 1 cut(s) 172
CviAII CATG 2 cut(s) 38, 233
CviJI RGCY 7 cut(s) 143, 148, 161, 214, 221, 254, 310
CviKI_1 RGCY 7 cut(s) 143, 148, 161, 214, 221, 254, 310
CviQI GTAC 3 cut(s) 21, 41, 187
DdeI CTNAG 5 cut(s) 112, 144, 149, 225, 338
DpnI GATC 2 cut(s) 36, 306
DpnII GATC 2 cut(s) 34, 304
FaeI CATG 2 cut(s) 41, 236
FaiI YATR 5 cut(s) 39, 57, 199, 234, 359
FatI CATG 2 cut(s) 37, 232
FbaI TGATCA 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 222, 255
FokI GGATG 1 cut(s) 281
Fsp4HI GCNGC 2 cut(s) 222, 255
GluI GCNGC 2 cut(s) 222, 255
GsuI CTGGAG 1 cut(s) 61
HapII CCGG 3 cut(s) 136, 173, 302
Hin1II CATG 2 cut(s) 41, 236
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HpaII CCGG 3 cut(s) 136, 173, 302
Hpy166II GTNNAC 3 cut(s) 23, 187, 330
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 3 cut(s) 23, 187, 330
HpyAV CCTTC 2 cut(s) 88, 238
HpyCH4V TGCA 2 cut(s) 55, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 5 cut(s) 112, 144, 149, 225, 338
Hsp92II CATG 2 cut(s) 41, 236
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 2 cut(s) 34, 304
LmnI GCTCC 1 cut(s) 103
LpnPI CCDG 9 cut(s) 40, 91, 99, 149, 186, 204, 224, 310, 315
Lsp1109I GCAGC 2 cut(s) 208, 241
LweI GCATC 1 cut(s) 238
MalI GATC 2 cut(s) 36, 306
MboI GATC 2 cut(s) 34, 304
MhlI GDGCHC 1 cut(s) 108
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 3 cut(s) 111, 175, 324
MspI CCGG 3 cut(s) 136, 173, 302
MspR9I CCNGG 1 cut(s) 137
MwoI GCNNNNNNNGC 1 cut(s) 260
NciI CCSGG 1 cut(s) 137
NdeII GATC 2 cut(s) 34, 304
NlaIII CATG 2 cut(s) 41, 236
PagI TCATGA 1 cut(s) 232
PinAI ACCGGT 1 cut(s) 172
PkrI GCNGC 2 cut(s) 223, 256
RsaI GTAC 3 cut(s) 22, 42, 188
RsaNI GTAC 3 cut(s) 21, 41, 187
SatI GCNGC 2 cut(s) 222, 255
Sau3AI GATC 2 cut(s) 34, 304
ScrFI CCNGG 1 cut(s) 137
SduI GDGCHC 1 cut(s) 108
SetI ASST 7 cut(s) 127, 150, 186, 223, 256, 312, 316
SfaNI GCATC 1 cut(s) 238
StyD4I CCNGG 1 cut(s) 135
TatI WGTACW 2 cut(s) 20, 40
TscAI CASTG 1 cut(s) 198
TseI GCWGC 2 cut(s) 221, 254
TspDTI ATGAA 3 cut(s) 17, 156, 249
TspRI CASTG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.