FvH4_5g13180

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000776
Physical Location & Seq
Forward (+)
7444469 .. 7448031
3563 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13180.t1

Sequence Viewer

Length: 921 bp
ATGTGTTATAGCTGGTCAGCTGTGAAGCAATTTAGCCATATAAATATACCGTATTTTAAAATTGACTTTGGGGATAAACGGATGTGGGCGTGGCTTGAAGATAAGGCGGGTACCATATATCGAGATTGGAAGGGGGACTTTTCAAGGCACTATAAGAAGTATGGGAGACAAACAATTCCGCCTGATTTGATACACAGGCAAGATGAGTGGGACTGGCTTTGCTGGCATTTTGAGTCGCCTGATTTCAAGACACGATCGGCGGCTAACAAGACCAACCGTGGTAAGAAGGAGTCGGAGCACCACACGGGGCGGCTACCTATCATCTACAGGGTGGTCCACCACAAAGAGAAGGGTAACGAATTTCCTGTTATCCCAGCTTACATAGAGACGTATGACACAGTCAACGACCCTAAAGCTGCCAAAAATCTTGAGGAAATGCAGAAAGAGGCAACTGAATTGAAAACTGCACAGCAGAATGCAAACCCTGACATCCCGGAGGCTGAGCTCCCACCTTTGGAGTGGTCAATGAATCTTAAGGTGCTTGAAGCAGGAGTCGGCAGAAGAGCCGGGAAAGAGATCCGTGGTCTTGGAAGAGCAGGTGTCCGACAGTTATCATCTTCCACTCCACGTTCTCGAGTTCATGAGGTGGAGGAGAGATTACATATTGCTGAGGAGAGGGCCGAAAAAGCTGAGGCGGTTGCGCAAAAAGTTAGTGAAGAGATGACATTGGTGAAGCAGCAACTAGCAGCAGTGATGGCTTTTATGGCGCAGCAGACTGGGTGTCCTCCACCAGTCCCTTCCCAACAACCTCTAGAAGAAAATATGGAGAAGCCTTTGGTTAGGTTGTTGTGCAGTTGGTTTTGTTTAGATGGAGAAGCATTTAAGATGATGATGATGATGATAGTGAAACAGGGAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

307

Amino Acids

35.31

Weight (kDa)

7.68

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 67 - 162 3.2e-06 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 587
Acc16I TGCGCA 1 cut(s) 702
Acc36I ACCTGC 1 cut(s) 587
Acc65I GGTACC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 110
AciI CCGC 5 cut(s) 107, 179, 260, 310, 695
AclWI GGATC 1 cut(s) 571
AcsI RAATTY 1 cut(s) 359
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 514
AflII CTTAAG 1 cut(s) 533
AgsI TTSAA 5 cut(s) 98, 144, 247, 460, 545
AhdI GACNNNNNGTC 1 cut(s) 780
AluBI AGCT 6 cut(s) 12, 20, 377, 416, 505, 689
AluI AGCT 6 cut(s) 12, 20, 377, 416, 505, 689
Alw21I GWGCWC 2 cut(s) 300, 507
Alw26I GTCTC 2 cut(s) 160, 380
AlwI GGATC 1 cut(s) 571
Ama87I CYCGRG 1 cut(s) 633
AoxI GGCC 1 cut(s) 678
ApeKI GCWGC 4 cut(s) 416, 736, 746, 769
ApoI RAATTY 1 cut(s) 359
Asp718I GGTACC 1 cut(s) 110
AspLEI GCGC 2 cut(s) 703, 769
AspS9I GGNCC 2 cut(s) 334, 678
AsuC2I CCSGG 2 cut(s) 494, 568
AsuHPI GGTGA 1 cut(s) 742
AvaI CYCGRG 1 cut(s) 633
AvaII GGWCC 1 cut(s) 334
BanI GGYRCC 1 cut(s) 110
BanII GRGCYC 1 cut(s) 507
Bbv12I GWGCWC 2 cut(s) 300, 507
BbvCI CCTCAGC 2 cut(s) 669, 690
BbvI GCAGC 4 cut(s) 403, 748, 758, 781
BccI CCATC 2 cut(s) 748, 863
BcnI CCSGG 2 cut(s) 494, 568
BcoDI GTCTC 2 cut(s) 160, 380
BfaI CTAG 2 cut(s) 743, 812
BfmI CTRYAG 1 cut(s) 325
BfrI CTTAAG 1 cut(s) 533
BfuAI ACCTGC 1 cut(s) 587
BisI GCNGC 6 cut(s) 261, 311, 417, 737, 747, 770
BlpI GCTNAGC 1 cut(s) 501
BlsI GCNGC 6 cut(s) 262, 312, 418, 738, 748, 771
Bme1390I CCNGG 2 cut(s) 494, 568
Bme18I GGWCC 1 cut(s) 334
BmeRI GACNNNNNGTC 1 cut(s) 780
BmeT110I CYCGRG 1 cut(s) 633
BmgT120I GGNCC 2 cut(s) 334, 678
BmiI GGNNCC 1 cut(s) 112
BmrFI CCNGG 2 cut(s) 494, 568
BmrI ACTGGG 1 cut(s) 786
BmuI ACTGGG 1 cut(s) 786
Bpu10I CCTNAGC 2 cut(s) 669, 690
Bpu1102I GCTNAGC 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 2 cut(s) 494, 568
BsaJI CCNNGG 2 cut(s) 277, 580
Bsc4I CCNNNNNNNGG 1 cut(s) 514
Bse1I ACTGG 3 cut(s) 218, 781, 791
BseDI CCNNGG 2 cut(s) 277, 580
BseGI GGATG 2 cut(s) 87, 489
BseLI CCNNNNNNNGG 1 cut(s) 514
BseMII CTCAG 3 cut(s) 492, 660, 681
BseNI ACTGG 3 cut(s) 218, 781, 791
BseRI GAGGAG 2 cut(s) 665, 686
BseXI GCAGC 4 cut(s) 403, 748, 758, 781
BseYI CCCAGC 1 cut(s) 373
BsgI GTGCAG 2 cut(s) 450, 871
Bsh1285I CGRYCG 1 cut(s) 257
BshFI GGCC 1 cut(s) 680
BshNI GGYRCC 1 cut(s) 110
BsiEI CGRYCG 1 cut(s) 257
BsiHKAI GWGCWC 2 cut(s) 300, 507
BsiHKCI CYCGRG 1 cut(s) 633
BsiSI CCGG 2 cut(s) 494, 567
BslFI GGGAC 3 cut(s) 149, 224, 779
BslI CCNNNNNNNGG 1 cut(s) 514
BsmAI GTCTC 2 cut(s) 160, 380
BsmBI CGTCTC 1 cut(s) 380
BsmFI GGGAC 3 cut(s) 149, 224, 779
BsmI GAATGC 1 cut(s) 481
BsnI GGCC 1 cut(s) 680
BsoBI CYCGRG 1 cut(s) 633
Bsp1286I GDGCHC 2 cut(s) 300, 507
Bsp143I GATC 2 cut(s) 254, 576
Bsp1720I GCTNAGC 1 cut(s) 501
BspACI CCGC 5 cut(s) 107, 179, 260, 310, 695
BspANI GGCC 1 cut(s) 680
BspCNI CTCAG 3 cut(s) 493, 661, 682
BspHI TCATGA 1 cut(s) 640
BspLI GGNNCC 1 cut(s) 112
BspMI ACCTGC 1 cut(s) 587
BspPI GGATC 1 cut(s) 571
BspQI GCTCTTC 2 cut(s) 556, 586
BspT107I GGYRCC 1 cut(s) 110
BspTI CTTAAG 1 cut(s) 533
BsrI ACTGG 3 cut(s) 218, 781, 791
BssECI CCNNGG 2 cut(s) 277, 580
BssMI GATC 2 cut(s) 254, 576
Bst4CI ACNGT 4 cut(s) 51, 278, 400, 609
Bst6I CTCTTC 3 cut(s) 556, 586, 711
BstAFI CTTAAG 1 cut(s) 533
BstC8I GCNNGC 1 cut(s) 224
BstDEI CTNAG 3 cut(s) 501, 669, 690
BstDSI CCRYGG 2 cut(s) 277, 580
BstF5I GGATG 2 cut(s) 87, 489
BstHHI GCGC 2 cut(s) 703, 769
BstKTI GATC 2 cut(s) 257, 579
BstMAI GTCTC 2 cut(s) 160, 380
BstMBI GATC 2 cut(s) 254, 576
BstMCI CGRYCG 1 cut(s) 257
BstMWI GCNNNNNNNGC 4 cut(s) 223, 686, 755, 764
BstSCI CCNGG 2 cut(s) 492, 566
BstSFI CTRYAG 1 cut(s) 325
BstV1I GCAGC 4 cut(s) 403, 748, 758, 781
BstX2I RGATCY 1 cut(s) 576
BstYI RGATCY 1 cut(s) 576
BsuRI GGCC 1 cut(s) 680
BtgI CCRYGG 2 cut(s) 277, 580
BtsCI GGATG 2 cut(s) 87, 489
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 1 cut(s) 756
BveI ACCTGC 1 cut(s) 587
Cac8I GCNNGC 1 cut(s) 224
CciI TCATGA 1 cut(s) 640
CfoI GCGC 2 cut(s) 703, 769
Cfr13I GGNCC 2 cut(s) 334, 678
Csp6I GTAC 1 cut(s) 111
CspCI CAANNNNNGTGG 2 cut(s) 188, 223
CviAII CATG 1 cut(s) 641
CviQI GTAC 1 cut(s) 111
DdeI CTNAG 3 cut(s) 501, 669, 690
DpnI GATC 2 cut(s) 256, 578
DpnII GATC 2 cut(s) 254, 576
DraI TTTAAA 1 cut(s) 58
DriI GACNNNNNGTC 1 cut(s) 780
Eam1104I CTCTTC 3 cut(s) 556, 586, 711
Eam1105I GACNNNNNGTC 1 cut(s) 780
EarI CTCTTC 3 cut(s) 556, 586, 711
EciI GGCGGA 1 cut(s) 168
Ecl136II GAGCTC 1 cut(s) 505
Eco24I GRGCYC 1 cut(s) 507
Eco47I GGWCC 1 cut(s) 334
Eco53kI GAGCTC 1 cut(s) 505
Eco88I CYCGRG 1 cut(s) 633
EcoICRI GAGCTC 1 cut(s) 505
EcoT38I GRGCYC 1 cut(s) 507
Esp3I CGTCTC 1 cut(s) 380
FaeI CATG 1 cut(s) 644
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FaqI GGGAC 3 cut(s) 149, 224, 779
FatI CATG 1 cut(s) 640
FauI CCCGC 1 cut(s) 100
Fnu4HI GCNGC 6 cut(s) 261, 311, 417, 737, 747, 770
FokI GGATG 2 cut(s) 94, 476
FriOI GRGCYC 1 cut(s) 507
Fsp4HI GCNGC 6 cut(s) 261, 311, 417, 737, 747, 770
FspBI CTAG 2 cut(s) 743, 812
FspI TGCGCA 1 cut(s) 702
GlaI GCGC 2 cut(s) 702, 768
GluI GCNGC 6 cut(s) 261, 311, 417, 737, 747, 770
GsaI CCCAGC 1 cut(s) 377
HaeIII GGCC 1 cut(s) 680
HapII CCGG 2 cut(s) 494, 567
HhaI GCGC 2 cut(s) 703, 769
Hin1II CATG 1 cut(s) 644
Hin6I GCGC 2 cut(s) 701, 767
HinP1I GCGC 2 cut(s) 701, 767
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 4 cut(s) 233, 290, 529, 552
HpaII CCGG 2 cut(s) 494, 567
HphI GGTGA 1 cut(s) 742
Hpy166II GTNNAC 2 cut(s) 337, 403
Hpy188I TCNGA 2 cut(s) 295, 605
Hpy188III TCNNGA 6 cut(s) 122, 247, 428, 633, 641, 812
Hpy8I GTNNAC 2 cut(s) 337, 403
HpyAV CCTTC 4 cut(s) 124, 280, 343, 807
HpyCH4III ACNGT 4 cut(s) 51, 278, 400, 609
HpyCH4IV ACGT 2 cut(s) 389, 628
HpyCH4V TGCA 4 cut(s) 439, 467, 479, 852
HpyF10VI GCNNNNNNNGC 4 cut(s) 223, 686, 755, 764
HpyF3I CTNAG 3 cut(s) 501, 669, 690
HpySE526I ACGT 2 cut(s) 389, 628
Hsp92II CATG 1 cut(s) 644
HspAI GCGC 2 cut(s) 701, 767
KpnI GGTACC 1 cut(s) 114
Kzo9I GATC 2 cut(s) 254, 576
LguI GCTCTTC 2 cut(s) 556, 586
LmnI GCTCC 2 cut(s) 295, 510
Lsp1109I GCAGC 4 cut(s) 403, 748, 758, 781
MaeI CTAG 2 cut(s) 743, 812
MaeII ACGT 2 cut(s) 389, 628
MaeIII GTNAC 1 cut(s) 353
MalI GATC 2 cut(s) 256, 578
MboI GATC 2 cut(s) 254, 576
MboII GAAGA 6 cut(s) 110, 573, 603, 609, 728, 827
MflI RGATCY 1 cut(s) 576
MhlI GDGCHC 2 cut(s) 300, 507
MluCI AATT 5 cut(s) 29, 60, 174, 359, 455
MlyI GAGTC 3 cut(s) 242, 299, 561
MmeI TCCRAC 2 cut(s) 273, 628
MseI TTAA 3 cut(s) 57, 534, 882
MspA1I CMGCKG 1 cut(s) 20
MspCI CTTAAG 1 cut(s) 533
MspI CCGG 2 cut(s) 494, 567
MspR9I CCNGG 2 cut(s) 494, 568
Mva1269I GAATGC 1 cut(s) 481
MwoI GCNNNNNNNGC 4 cut(s) 223, 686, 755, 764
NciI CCSGG 2 cut(s) 494, 568
NdeII GATC 2 cut(s) 254, 576
NlaIII CATG 1 cut(s) 644
NlaIV GGNNCC 1 cut(s) 112
NsbI TGCGCA 1 cut(s) 702
PaeR7I CTCGAG 1 cut(s) 633
PagI TCATGA 1 cut(s) 640
PaqCI CACCTGC 1 cut(s) 587
PciSI GCTCTTC 2 cut(s) 556, 586
PctI GAATGC 1 cut(s) 481
PfeI GAWTC 1 cut(s) 529
PflFI GACNNNGTC 1 cut(s) 398
PfoI TCCNGGA 1 cut(s) 492
PkrI GCNGC 6 cut(s) 262, 312, 418, 738, 748, 771
Ple19I CGATCG 1 cut(s) 257
PleI GAGTC 3 cut(s) 241, 298, 560
PpsI GAGTC 3 cut(s) 241, 298, 560
Psp124BI GAGCTC 1 cut(s) 507
PspFI CCCAGC 1 cut(s) 373
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 2 cut(s) 334, 678
PsuI RGATCY 1 cut(s) 576
PsyI GACNNNGTC 1 cut(s) 398
PvuI CGATCG 1 cut(s) 257
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
SacI GAGCTC 1 cut(s) 507
SapI GCTCTTC 2 cut(s) 556, 586
SaqAI TTAA 3 cut(s) 57, 534, 882
SatI GCNGC 6 cut(s) 261, 311, 417, 737, 747, 770
Sau3AI GATC 2 cut(s) 254, 576
Sau96I GGNCC 2 cut(s) 334, 678
SchI GAGTC 3 cut(s) 242, 299, 561
ScrFI CCNGG 2 cut(s) 494, 568
SduI GDGCHC 2 cut(s) 300, 507
SfcI CTRYAG 1 cut(s) 325
Sfr274I CTCGAG 1 cut(s) 633
SinI GGWCC 1 cut(s) 334
SlaI CTCGAG 1 cut(s) 633
SmlI CTYRAG 3 cut(s) 428, 533, 633
SmoI CTYRAG 3 cut(s) 428, 533, 633
Sse9I AATT 5 cut(s) 29, 60, 174, 359, 455
SsiI CCGC 5 cut(s) 107, 179, 260, 310, 695
SspMI CTAG 2 cut(s) 743, 812
SstI GAGCTC 1 cut(s) 507
StyD4I CCNGG 2 cut(s) 492, 566
TaaI ACNGT 4 cut(s) 51, 278, 400, 609
TaiI ACGT 2 cut(s) 392, 631
TaqI TCGA 2 cut(s) 121, 634
TasI AATT 5 cut(s) 29, 60, 174, 359, 455
TauI GCSGC 2 cut(s) 263, 313
TfiI GAWTC 1 cut(s) 529
Tru1I TTAA 3 cut(s) 57, 534, 882
Tru9I TTAA 3 cut(s) 57, 534, 882
TscAI CASTG 1 cut(s) 756
TseI GCWGC 4 cut(s) 416, 736, 746, 769
TspDTI ATGAA 2 cut(s) 542, 629
TspGWI ACGGA 2 cut(s) 94, 569
TspRI CASTG 1 cut(s) 756
Tth111I GACNNNGTC 1 cut(s) 398
Vha464I CTTAAG 1 cut(s) 533
VpaK11BI GGWCC 1 cut(s) 334
XapI RAATTY 1 cut(s) 359
XbaI TCTAGA 1 cut(s) 811
XcmI CCANNNNNNNNNTGG 1 cut(s) 516
XhoI CTCGAG 1 cut(s) 633
XspI CTAG 2 cut(s) 743, 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.