FvH4_4g08610

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000776
Physical Location & Seq
Reverse (-)
8941225 .. 8943365
2141 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08610.t1

Sequence Viewer

Length: 984 bp
ATGTTGACACACGATGTCGGCCACATTATACGGGACGAAATTTCCATGGTGGCTCCAACTTGGGGTGACACTACTGATGATGAGCAGAAGAAGCTGCCCACTAAACTCTTTATCTTTTATGAGTTTGATGTTGATGATAAGCTCATGTGGAAGTGGTTGGACGACAAGGCTAAAAATGTGTACAAAAACTGGAAGTGCACTATAAATACAATTCGGAAGGAAAACCCGGGGAAGATCCCAGAAGAGTTTGAACACCGGCTGGATGAGTGGAACTGGCTCCTTAAACACTTCGAGTCTGATGGATTCACGCTTCATGTTAATAACCAAAGTGTTAATATGATGAAATTACAGAGAAGATCGACTGCAAACAAGAGTAACCGGGACAAGAAGACATTGCACCACCACACCGAAGCGAGGCCTTTCATCTACAATGCGAAGGAATTGAAGGACAAGGGTGAACACCTCTATTTTATCAAAAGTTACTCACAAGCGTATGACTTAGCTCACAGTCTGAAAGCAGCTGAAAATGAAGCTAAACTGATGGAGAAGGTTGATGAGATCCGTGACAATGTGAGGAAGAAATACCCTGGCATTTCGAAAGAAGATATTGATCTTCATTTTGACCAACAAACTCAAGCGATTGTGTTTGAAAAAGCATTTGGACATAGAAACATGAACGAGATCCAGGGCATGGGACTAGTAGGCAGTTATGGTTTGAGTCAAGGGCCCGATAGGAGCTGCACTTCACGTTCCCAACGAGCTGCACTTGTTGATATTGCTGTGGAGGAAGCCCGAAAGGCCAAGGAGGAAGCTCGGAAAGCCAATGAGGAAGCCCGAAAAGCTAAGGAAGAGAACATACAAATCATGGCACGTCTTCAACAATGTGAGCAGTTTCTCTTCACCAAATTCGGCGTATGCCAGCCAGCAGTCCCACCACAAGAGCAGCCCAATGATGATGATCATGATGATGGAGGCATTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

328

Amino Acids

38.07

Weight (kDa)

6.04

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 691
AclWI GGATC 3 cut(s) 229, 553, 676
AcoI YGGCCR 1 cut(s) 19
AcsI RAATTY 2 cut(s) 39, 905
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 3 cut(s) 62, 414, 691
AgsI TTSAA 4 cut(s) 251, 445, 650, 878
AhlI ACTAGT 1 cut(s) 697
AjiI CACGTC 1 cut(s) 872
AjnI CCWGG 2 cut(s) 586, 684
AjuI GAANNNNNNNTTGG 2 cut(s) 642, 674
AluBI AGCT 9 cut(s) 94, 142, 503, 521, 533, 738, 761, 812, 842
AluI AGCT 9 cut(s) 94, 142, 503, 521, 533, 738, 761, 812, 842
Alw21I GWGCWC 1 cut(s) 200
Alw44I GTGCAC 1 cut(s) 196
AlwI GGATC 3 cut(s) 229, 553, 676
Ama87I CYCGRG 1 cut(s) 226
AoxI GGCC 4 cut(s) 19, 416, 725, 798
ApaI GGGCCC 1 cut(s) 729
ApaLI GTGCAC 1 cut(s) 196
ApeKI GCWGC 5 cut(s) 94, 518, 738, 761, 943
ApoI RAATTY 2 cut(s) 39, 905
AspS9I GGNCC 2 cut(s) 725, 726
AsuC2I CCSGG 3 cut(s) 227, 228, 380
AsuHPI GGTGA 3 cut(s) 77, 467, 892
AsuII TTCGAA 1 cut(s) 596
AvaI CYCGRG 1 cut(s) 226
BaeGI GKGCMC 2 cut(s) 200, 729
BanII GRGCYC 1 cut(s) 729
BarI GAAGNNNNNNTAC 2 cut(s) 840, 872
BbsI GAAGAC 2 cut(s) 395, 866
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 5 cut(s) 81, 530, 725, 748, 955
BccI CCATC 3 cut(s) 293, 535, 962
BciT130I CCWGG 2 cut(s) 588, 686
BclI TGATCA 1 cut(s) 958
BcnI CCSGG 3 cut(s) 227, 228, 380
BcuI ACTAGT 1 cut(s) 697
BfaI CTAG 1 cut(s) 698
BglI GCCNNNNNGGC 1 cut(s) 797
BisI GCNGC 5 cut(s) 95, 519, 739, 762, 944
BlsI GCNGC 5 cut(s) 96, 520, 740, 763, 945
Bme1390I CCNGG 5 cut(s) 227, 228, 380, 588, 686
BmeT110I CYCGRG 1 cut(s) 226
BmgBI CACGTC 1 cut(s) 872
BmgT120I GGNCC 2 cut(s) 725, 726
BmiI GGNNCC 3 cut(s) 54, 278, 727
BmrFI CCNGG 5 cut(s) 227, 228, 380, 588, 686
BpiI GAAGAC 2 cut(s) 395, 866
Bpu10I CCTNAGC 1 cut(s) 843
Bpu14I TTCGAA 1 cut(s) 596
BpuEI CTTGAG 1 cut(s) 618
BpuMI CCSGG 3 cut(s) 227, 228, 380
BsaBI GATNNNNATC 2 cut(s) 609, 957
BsaJI CCNNGG 6 cut(s) 45, 226, 227, 586, 685, 801
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 414, 691
Bse118I RCCGGY 1 cut(s) 255
Bse1I ACTGG 2 cut(s) 194, 278
Bse3DI GCAATG 1 cut(s) 392
Bse8I GATNNNNATC 2 cut(s) 609, 957
BseBI CCWGG 2 cut(s) 588, 686
BseDI CCNNGG 6 cut(s) 45, 226, 227, 586, 685, 801
BseGI GGATG 1 cut(s) 268
BseJI GATNNNNATC 2 cut(s) 609, 957
BseLI CCNNNNNNNGG 3 cut(s) 62, 414, 691
BseMI GCAATG 1 cut(s) 392
BseNI ACTGG 2 cut(s) 194, 278
BseSI GKGCMC 2 cut(s) 200, 729
BseXI GCAGC 5 cut(s) 81, 530, 725, 748, 955
BsgI GTGCAG 2 cut(s) 724, 747
BshFI GGCC 4 cut(s) 21, 418, 727, 800
BsiHKAI GWGCWC 1 cut(s) 200
BsiHKCI CYCGRG 1 cut(s) 226
BsiSI CCGG 3 cut(s) 227, 256, 379
BslFI GGGAC 4 cut(s) 47, 395, 708, 914
BslI CCNNNNNNNGG 3 cut(s) 62, 414, 691
BsmFI GGGAC 4 cut(s) 47, 395, 708, 914
BsnI GGCC 4 cut(s) 21, 418, 727, 800
BsoBI CYCGRG 1 cut(s) 226
Bsp119I TTCGAA 1 cut(s) 596
Bsp120I GGGCCC 1 cut(s) 725
Bsp1286I GDGCHC 2 cut(s) 200, 729
Bsp1407I TGTACA 1 cut(s) 180
Bsp143I GATC 6 cut(s) 234, 356, 558, 610, 681, 958
Bsp19I CCATGG 1 cut(s) 45
BspANI GGCC 4 cut(s) 21, 418, 727, 800
BspHI TCATGA 1 cut(s) 961
BspLI GGNNCC 3 cut(s) 54, 278, 727
BspPI GGATC 3 cut(s) 229, 553, 676
BspT104I TTCGAA 1 cut(s) 596
BsrDI GCAATG 1 cut(s) 392
BsrFI RCCGGY 1 cut(s) 255
BsrGI TGTACA 1 cut(s) 180
BsrI ACTGG 2 cut(s) 194, 278
BssAI RCCGGY 1 cut(s) 255
BssECI CCNNGG 6 cut(s) 45, 226, 227, 586, 685, 801
BssMI GATC 6 cut(s) 234, 356, 558, 610, 681, 958
BssT1I CCWWGG 2 cut(s) 45, 801
Bst2UI CCWGG 2 cut(s) 588, 686
Bst4CI ACNGT 1 cut(s) 509
Bst6I CTCTTC 3 cut(s) 237, 843, 902
BstAUI TGTACA 1 cut(s) 180
BstBI TTCGAA 1 cut(s) 596
BstC8I GCNNGC 2 cut(s) 920, 924
BstDEI CTNAG 2 cut(s) 499, 843
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 268
BstKTI GATC 6 cut(s) 237, 359, 561, 613, 684, 961
BstMBI GATC 6 cut(s) 234, 356, 558, 610, 681, 958
BstMWI GCNNNNNNNGC 4 cut(s) 91, 797, 818, 839
BstNI CCWGG 2 cut(s) 588, 686
BstSCI CCNGG 5 cut(s) 225, 226, 378, 586, 684
BstSLI GKGCMC 2 cut(s) 200, 729
BstV1I GCAGC 5 cut(s) 81, 530, 725, 748, 955
BstV2I GAAGAC 2 cut(s) 395, 866
BstX2I RGATCY 3 cut(s) 234, 558, 681
BstYI RGATCY 3 cut(s) 234, 558, 681
BsuRI GGCC 4 cut(s) 21, 418, 727, 800
BtgI CCRYGG 1 cut(s) 45
BtrI CACGTC 1 cut(s) 872
BtsCI GGATG 1 cut(s) 268
Cac8I GCNNGC 2 cut(s) 920, 924
CciI TCATGA 1 cut(s) 961
Cfr10I RCCGGY 1 cut(s) 255
Cfr13I GGNCC 2 cut(s) 725, 726
Cfr9I CCCGGG 1 cut(s) 226
Csp6I GTAC 1 cut(s) 181
CviAII CATG 7 cut(s) 46, 145, 314, 673, 691, 865, 962
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 2 cut(s) 499, 843
DpnI GATC 6 cut(s) 236, 358, 560, 612, 683, 960
DpnII GATC 6 cut(s) 234, 356, 558, 610, 681, 958
EaeI YGGCCR 1 cut(s) 19
Eam1104I CTCTTC 3 cut(s) 237, 843, 902
EarI CTCTTC 3 cut(s) 237, 843, 902
Eco130I CCWWGG 2 cut(s) 45, 801
Eco147I AGGCCT 1 cut(s) 418
Eco24I GRGCYC 1 cut(s) 729
Eco88I CYCGRG 1 cut(s) 226
EcoO109I RGGNCCY 1 cut(s) 725
EcoRII CCWGG 2 cut(s) 586, 684
EcoT14I CCWWGG 2 cut(s) 45, 801
EcoT38I GRGCYC 1 cut(s) 729
ErhI CCWWGG 2 cut(s) 45, 801
FaeI CATG 7 cut(s) 49, 148, 317, 676, 694, 868, 965
FaqI GGGAC 4 cut(s) 47, 395, 708, 914
FatI CATG 7 cut(s) 45, 144, 313, 672, 690, 864, 961
FbaI TGATCA 1 cut(s) 958
Fnu4HI GCNGC 5 cut(s) 95, 519, 739, 762, 944
FokI GGATG 1 cut(s) 275
FriOI GRGCYC 1 cut(s) 729
Fsp4HI GCNGC 5 cut(s) 95, 519, 739, 762, 944
FspBI CTAG 1 cut(s) 698
GluI GCNGC 5 cut(s) 95, 519, 739, 762, 944
HaeIII GGCC 4 cut(s) 21, 418, 727, 800
HapII CCGG 3 cut(s) 227, 256, 379
Hin1II CATG 7 cut(s) 49, 148, 317, 676, 694, 868, 965
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 3 cut(s) 293, 303, 718
HpaII CCGG 3 cut(s) 227, 256, 379
HphI GGTGA 3 cut(s) 77, 467, 892
Hpy166II GTNNAC 4 cut(s) 6, 181, 198, 458
Hpy188I TCNGA 4 cut(s) 216, 298, 513, 816
Hpy188III TCNNGA 1 cut(s) 962
Hpy8I GTNNAC 4 cut(s) 6, 181, 198, 458
HpyAV CCTTC 4 cut(s) 211, 430, 439, 541
HpyCH4III ACNGT 1 cut(s) 509
HpyCH4IV ACGT 2 cut(s) 748, 871
HpyCH4V TGCA 5 cut(s) 198, 365, 397, 741, 764
HpyF10VI GCNNNNNNNGC 4 cut(s) 91, 797, 818, 839
HpyF3I CTNAG 2 cut(s) 499, 843
HpySE526I ACGT 2 cut(s) 748, 871
Hsp92II CATG 7 cut(s) 49, 148, 317, 676, 694, 868, 965
Ksp22I TGATCA 1 cut(s) 958
Kzo9I GATC 6 cut(s) 234, 356, 558, 610, 681, 958
LmnI GCTCC 3 cut(s) 58, 282, 735
Lsp1109I GCAGC 5 cut(s) 81, 530, 725, 748, 955
MaeI CTAG 1 cut(s) 698
MaeII ACGT 2 cut(s) 748, 871
MaeIII GTNAC 4 cut(s) 65, 374, 479, 563
MalI GATC 6 cut(s) 236, 358, 560, 612, 683, 960
MboI GATC 6 cut(s) 234, 356, 558, 610, 681, 958
MflI RGATCY 3 cut(s) 234, 558, 681
MhlI GDGCHC 2 cut(s) 200, 729
MluCI AATT 5 cut(s) 39, 210, 344, 440, 905
MlyI GAGTC 2 cut(s) 302, 727
MmeI TCCRAC 2 cut(s) 80, 138
MnlI CCTC 7 cut(s) 408, 473, 567, 778, 799, 820, 965
MseI TTAA 3 cut(s) 282, 318, 333
MslI CAYNNNNRTG 1 cut(s) 966
MspA1I CMGCKG 1 cut(s) 521
MspI CCGG 3 cut(s) 227, 256, 379
MspR9I CCNGG 5 cut(s) 227, 228, 380, 588, 686
MvaI CCWGG 2 cut(s) 588, 686
MwoI GCNNNNNNNGC 4 cut(s) 91, 797, 818, 839
NciI CCSGG 3 cut(s) 227, 228, 380
NcoI CCATGG 1 cut(s) 45
NdeII GATC 6 cut(s) 234, 356, 558, 610, 681, 958
NlaIII CATG 7 cut(s) 49, 148, 317, 676, 694, 868, 965
NlaIV GGNNCC 3 cut(s) 54, 278, 727
NmuCI GTSAC 2 cut(s) 65, 563
NspV TTCGAA 1 cut(s) 596
PagI TCATGA 1 cut(s) 961
PceI AGGCCT 1 cut(s) 418
PcsI WCGNNNNNNNCGW 1 cut(s) 754
PfeI GAWTC 1 cut(s) 303
PflMI CCANNNNNTGG 1 cut(s) 691
PkrI GCNGC 5 cut(s) 96, 520, 740, 763, 945
PleI GAGTC 2 cut(s) 301, 726
PpsI GAGTC 2 cut(s) 301, 726
Psp6I CCWGG 2 cut(s) 586, 684
PspGI CCWGG 2 cut(s) 586, 684
PspN4I GGNNCC 3 cut(s) 54, 278, 727
PspOMI GGGCCC 1 cut(s) 725
PspPI GGNCC 2 cut(s) 725, 726
PsuI RGATCY 3 cut(s) 234, 558, 681
PvuII CAGCTG 1 cut(s) 521
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 966
SaqAI TTAA 3 cut(s) 282, 318, 333
SatI GCNGC 5 cut(s) 95, 519, 739, 762, 944
Sau3AI GATC 6 cut(s) 234, 356, 558, 610, 681, 958
Sau96I GGNCC 2 cut(s) 725, 726
SchI GAGTC 2 cut(s) 302, 727
ScrFI CCNGG 5 cut(s) 227, 228, 380, 588, 686
SduI GDGCHC 2 cut(s) 200, 729
SfuI TTCGAA 1 cut(s) 596
SmaI CCCGGG 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 966
SmlI CTYRAG 1 cut(s) 633
SmoI CTYRAG 1 cut(s) 633
SpeI ACTAGT 1 cut(s) 697
Sse9I AATT 5 cut(s) 39, 210, 344, 440, 905
SseBI AGGCCT 1 cut(s) 418
SspMI CTAG 1 cut(s) 698
StuI AGGCCT 1 cut(s) 418
StyD4I CCNGG 5 cut(s) 225, 226, 378, 586, 684
StyI CCWWGG 2 cut(s) 45, 801
TaaI ACNGT 1 cut(s) 509
TaiI ACGT 2 cut(s) 751, 874
TaqI TCGA 3 cut(s) 291, 359, 596
TasI AATT 5 cut(s) 39, 210, 344, 440, 905
TatI WGTACW 1 cut(s) 180
TfiI GAWTC 1 cut(s) 303
Tru1I TTAA 3 cut(s) 282, 318, 333
Tru9I TTAA 3 cut(s) 282, 318, 333
TseFI GTSAC 2 cut(s) 65, 563
TseI GCWGC 5 cut(s) 94, 518, 738, 761, 943
Tsp45I GTSAC 2 cut(s) 65, 563
TspDTI ATGAA 6 cut(s) 302, 356, 412, 543, 605, 689
TspGWI ACGGA 1 cut(s) 551
TspMI CCCGGG 1 cut(s) 226
Van91I CCANNNNNTGG 1 cut(s) 691
VneI GTGCAC 1 cut(s) 196
XapI RAATTY 2 cut(s) 39, 905
XmaI CCCGGG 1 cut(s) 226
XspI CTAG 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.