Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000776

Physical Location & Seq

Genomic Coordinates Forward (+)

13762548 .. 13764088

Gene Structure 1541 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g16000.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGATTAAGCTTGATGTTAATAACCAAAGTGTTAATATGATGAAATTACAGAGAAGATCGGCTGCAAACAAGAGTAATCGAGACAAGAAGACATTGCACCACCACACCGGGGCGAGGCCTTTCATCTACAATGTGAAGGAATTGAAGGACAAGGGTGAACACCTCTATTTTATTAAAAGTTACTCACAGGTGTATGACTCAGCTCACAACCTGGAAGCAGCTGAAAATGAAGCTAAACTGATGGAGAAGGTTGATGAGATCCGTGACAATGTGAGGAAGCAATACCCTGACATTCCGGAAGAAGATATTGATCTTCATTTTGACCAACAAACTCAAGCGATCGTGTTTGAAAAAGCATTTGGACATAGAAACATGAACGAGATCCGGGGCATGGGACTAGTAGGCAGTTATGGTTTGAGTCAAGGGCCCGATAGGAGCTGCACTTCACGTTCCCAACGAGCTGCACTTGTTGATATTGTTGTGGAGGAAGCCCGAAAGGCCAAGGAGGAAACCCGGAAAGCCAATGAGGAAGCCCGAAAAGCCAAGGAAGTGAACATACAAATCATGACACGTCTTCAACAATGTGAGCAGTTTCTCTTCACCAAATTTGGCGTATGCCAGCCGGCAGTCCCACCACAGGAGCAGCCCAATGATGATGATCATGATGATGGAGGCAGTGATTCAATTGACTTTGTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transposase_24

Protein Analysis

234

Amino Acids

26.7

Weight (kDa)

5.94

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000776)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15161 FvH4_1g18892 FvH4_1g18893 FvH4_1g20162 FvH4_1g26653 FvH4_1g29050 FvH4_1g29090 FvH4_1g29091 FvH4_2g00890 FvH4_2g00890 FvH4_2g14380 FvH4_2g17540 FvH4_2g19090 FvH4_2g19770 FvH4_2g30343 FvH4_2g30344 FvH4_2g30380 FvH4_2g34010 FvH4_3g18731 FvH4_3g21360 FvH4_3g23880 FvH4_3g26330 FvH4_3g26702 FvH4_3g30710 FvH4_3g30880 FvH4_3g31911 FvH4_3g32572 FvH4_3g38790 FvH4_3g45880 FvH4_4g03280 FvH4_4g08270 FvH4_4g08610 FvH4_4g08911 FvH4_4g10030 FvH4_4g10220 FvH4_4g10221 FvH4_4g10232 FvH4_4g10233 FvH4_4g10364 FvH4_4g14460 FvH4_4g16210 FvH4_4g27150 FvH4_5g06880 FvH4_5g13180 FvH4_5g19450 FvH4_5g20620 FvH4_5g22931 FvH4_5g24202 FvH4_5g24970 FvH4_5g31450 FvH4_5g31660 FvH4_5g32550 FvH4_6g06811 FvH4_6g17172 FvH4_6g17190 FvH4_6g18010 FvH4_6g21800 FvH4_6g21871 FvH4_6g23101 FvH4_6g23360 FvH4_6g24310 FvH4_6g30100 FvH4_6g31520 FvH4_6g31530 FvH4_6g34820 FvH4_6g35510 FvH4_6g40350 FvH4_6g40360 FvH4_7g09590 FvH4_7g16000

Species

Orthologous Gene IDs

fragaria_vesca

FvH4_1g15161 FvH4_1g18892 FvH4_1g18893 FvH4_1g20162 FvH4_1g26653 FvH4_1g29050 FvH4_1g29090 FvH4_1g29091 FvH4_2g00890 FvH4_2g00890 FvH4_2g14380 FvH4_2g17540 FvH4_2g19090 FvH4_2g19770 FvH4_2g30343 FvH4_2g30344 FvH4_2g30380 FvH4_2g34010 FvH4_3g18731 FvH4_3g21360 FvH4_3g23880 FvH4_3g26330 FvH4_3g26702 FvH4_3g30710 FvH4_3g30880 FvH4_3g31911 FvH4_3g32572 FvH4_3g38790 FvH4_3g45880 FvH4_4g03280 FvH4_4g08270 FvH4_4g08610 FvH4_4g08911 FvH4_4g10030 FvH4_4g10220 FvH4_4g10221 FvH4_4g10232 FvH4_4g10233 FvH4_4g10364 FvH4_4g14460 FvH4_4g16210 FvH4_4g27150 FvH4_5g06880 FvH4_5g13180 FvH4_5g19450 FvH4_5g20620 FvH4_5g22931 FvH4_5g24202 FvH4_5g24970 FvH4_5g31450 FvH4_5g31660 FvH4_5g32550 FvH4_6g06811 FvH4_6g17172 FvH4_6g17190 FvH4_6g18010 FvH4_6g21800 FvH4_6g21871 FvH4_6g23101 FvH4_6g23360 FvH4_6g24310 FvH4_6g30100 FvH4_6g31520 FvH4_6g31530 FvH4_6g34820 FvH4_6g35510 FvH4_6g40350 FvH4_6g40360 FvH4_7g09590 FvH4_7g16000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	295
AclWI	GGATC	2 cut(s)	253, 376
AcsI	RAATTY	1 cut(s)	605
AfiI	CCNNNNNNNGG	4 cut(s)	109, 114, 391, 637
AflIII	ACRYGT	1 cut(s)	569
AgsI	TTSAA	4 cut(s)	145, 350, 578, 684
AhlI	ACTAGT	1 cut(s)	397
AjiI	CACGTC	1 cut(s)	572
AjnI	CCWGG	1 cut(s)	210
AjuI	GAANNNNNNNTTGG	2 cut(s)	342, 374
AluBI	AGCT	6 cut(s)	10, 203, 221, 233, 438, 461
AluI	AGCT	6 cut(s)	10, 203, 221, 233, 438, 461
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	2 cut(s)	253, 376
Aor13HI	TCCGGA	1 cut(s)	295
AoxI	GGCC	3 cut(s)	116, 425, 498
ApaI	GGGCCC	1 cut(s)	429
ApeKI	GCWGC	5 cut(s)	62, 218, 438, 461, 643
ApoI	RAATTY	1 cut(s)	605
AspS9I	GGNCC	2 cut(s)	425, 426
AsuC2I	CCSGG	3 cut(s)	109, 386, 514
AsuHPI	GGTGA	2 cut(s)	167, 592
BaeGI	GKGCMC	1 cut(s)	429
BanII	GRGCYC	1 cut(s)	429
BarI	GAAGNNNNNNTAC	2 cut(s)	540, 572
BbsI	GAAGAC	2 cut(s)	95, 566
BbvI	GCAGC	5 cut(s)	49, 230, 425, 448, 655
BccI	CCATC	2 cut(s)	235, 662
BciT130I	CCWGG	1 cut(s)	212
BclI	TGATCA	1 cut(s)	658
BcnI	CCSGG	3 cut(s)	109, 386, 514
BcoDI	GTCTC	1 cut(s)	75
BcuI	ACTAGT	1 cut(s)	397
BfaI	CTAG	1 cut(s)	398
BglI	GCCNNNNNGGC	1 cut(s)	497
BisI	GCNGC	5 cut(s)	63, 219, 439, 462, 644
BlsI	GCNGC	5 cut(s)	64, 220, 440, 463, 645
Bme1390I	CCNGG	4 cut(s)	109, 212, 386, 514
BmgBI	CACGTC	1 cut(s)	572
BmgT120I	GGNCC	2 cut(s)	425, 426
BmiI	GGNNCC	1 cut(s)	427
BmrFI	CCNGG	4 cut(s)	109, 212, 386, 514
BpiI	GAAGAC	2 cut(s)	95, 566
BpuEI	CTTGAG	1 cut(s)	318
BpuMI	CCSGG	3 cut(s)	109, 386, 514
BsaBI	GATNNNNATC	2 cut(s)	309, 657
BsaJI	CCNNGG	4 cut(s)	108, 385, 501, 543
BsaWI	WCCGGW	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 114, 391, 637
Bse118I	RCCGGY	1 cut(s)	622
Bse3DI	GCAATG	1 cut(s)	92
Bse8I	GATNNNNATC	2 cut(s)	309, 657
BseAI	TCCGGA	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	4 cut(s)	108, 385, 501, 543
BseJI	GATNNNNATC	2 cut(s)	309, 657
BseLI	CCNNNNNNNGG	4 cut(s)	109, 114, 391, 637
BseMI	GCAATG	1 cut(s)	92
BseMII	CTCAG	1 cut(s)	213
BseSI	GKGCMC	1 cut(s)	429
BseXI	GCAGC	5 cut(s)	49, 230, 425, 448, 655
BsgI	GTGCAG	2 cut(s)	424, 447
Bsh1285I	CGRYCG	1 cut(s)	342
BshFI	GGCC	3 cut(s)	118, 427, 500
BsiEI	CGRYCG	1 cut(s)	342
BsiSI	CCGG	5 cut(s)	108, 296, 385, 514, 623
BslFI	GGGAC	2 cut(s)	408, 614
BslI	CCNNNNNNNGG	4 cut(s)	109, 114, 391, 637
BsmAI	GTCTC	1 cut(s)	75
BsmFI	GGGAC	2 cut(s)	408, 614
BsnI	GGCC	3 cut(s)	118, 427, 500
Bsp120I	GGGCCC	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp13I	TCCGGA	1 cut(s)	295
Bsp143I	GATC	6 cut(s)	56, 258, 310, 339, 381, 658
BspANI	GGCC	3 cut(s)	118, 427, 500
BspCNI	CTCAG	1 cut(s)	212
BspEI	TCCGGA	1 cut(s)	295
BspHI	TCATGA	2 cut(s)	564, 661
BspLI	GGNNCC	1 cut(s)	427
BspPI	GGATC	2 cut(s)	253, 376
BsrDI	GCAATG	1 cut(s)	92
BsrFI	RCCGGY	1 cut(s)	622
BssAI	RCCGGY	1 cut(s)	622
BssECI	CCNNGG	4 cut(s)	108, 385, 501, 543
BssMI	GATC	6 cut(s)	56, 258, 310, 339, 381, 658
BssT1I	CCWWGG	2 cut(s)	501, 543
Bst2UI	CCWGG	1 cut(s)	212
Bst6I	CTCTTC	1 cut(s)	602
BstC8I	GCNNGC	2 cut(s)	620, 624
BstDEI	CTNAG	1 cut(s)	199
BstKTI	GATC	6 cut(s)	59, 261, 313, 342, 384, 661
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	6 cut(s)	56, 258, 310, 339, 381, 658
BstMCI	CGRYCG	1 cut(s)	342
BstMWI	GCNNNNNNNGC	2 cut(s)	497, 539
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	4 cut(s)	107, 210, 384, 512
BstSLI	GKGCMC	1 cut(s)	429
BstV1I	GCAGC	5 cut(s)	49, 230, 425, 448, 655
BstV2I	GAAGAC	2 cut(s)	95, 566
BstX2I	RGATCY	2 cut(s)	258, 381
BstYI	RGATCY	2 cut(s)	258, 381
BsuRI	GGCC	3 cut(s)	118, 427, 500
BtrI	CACGTC	1 cut(s)	572
BtsI	GCAGTG	1 cut(s)	682
BtsIMutI	CAGTG	1 cut(s)	682
Cac8I	GCNNGC	2 cut(s)	620, 624
CciI	TCATGA	2 cut(s)	564, 661
Cfr10I	RCCGGY	1 cut(s)	622
Cfr13I	GGNCC	2 cut(s)	425, 426
CviAII	CATG	4 cut(s)	373, 391, 565, 662
DdeI	CTNAG	1 cut(s)	199
DpnI	GATC	6 cut(s)	58, 260, 312, 341, 383, 660
DpnII	GATC	6 cut(s)	56, 258, 310, 339, 381, 658
Eam1104I	CTCTTC	1 cut(s)	602
EarI	CTCTTC	1 cut(s)	602
Eco130I	CCWWGG	2 cut(s)	501, 543
Eco147I	AGGCCT	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	429
EcoO109I	RGGNCCY	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	210
EcoT14I	CCWWGG	2 cut(s)	501, 543
EcoT38I	GRGCYC	1 cut(s)	429
ErhI	CCWWGG	2 cut(s)	501, 543
FaeI	CATG	4 cut(s)	376, 394, 568, 665
FaqI	GGGAC	2 cut(s)	408, 614
FatI	CATG	4 cut(s)	372, 390, 564, 661
FbaI	TGATCA	1 cut(s)	658
Fnu4HI	GCNGC	5 cut(s)	63, 219, 439, 462, 644
FriOI	GRGCYC	1 cut(s)	429
Fsp4HI	GCNGC	5 cut(s)	63, 219, 439, 462, 644
FspBI	CTAG	1 cut(s)	398
GluI	GCNGC	5 cut(s)	63, 219, 439, 462, 644
HaeIII	GGCC	3 cut(s)	118, 427, 500
HapII	CCGG	5 cut(s)	108, 296, 385, 514, 623
Hin1II	CATG	4 cut(s)	376, 394, 568, 665
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	3 cut(s)	197, 418, 680
HpaII	CCGG	5 cut(s)	108, 296, 385, 514, 623
HphI	GGTGA	2 cut(s)	167, 592
Hpy166II	GTNNAC	2 cut(s)	158, 553
Hpy188III	TCNNGA	4 cut(s)	80, 296, 565, 662
Hpy8I	GTNNAC	2 cut(s)	158, 553
HpyAV	CCTTC	3 cut(s)	130, 139, 241
HpyCH4IV	ACGT	2 cut(s)	448, 571
HpyCH4V	TGCA	4 cut(s)	65, 97, 441, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	497, 539
HpyF3I	CTNAG	1 cut(s)	199
HpySE526I	ACGT	2 cut(s)	448, 571
Hsp92II	CATG	4 cut(s)	376, 394, 568, 665
Kpn2I	TCCGGA	1 cut(s)	295
KroI	GCCGGC	1 cut(s)	622
KroNI	GCCGGC	1 cut(s)	624
Ksp22I	TGATCA	1 cut(s)	658
Kzo9I	GATC	6 cut(s)	56, 258, 310, 339, 381, 658
LmnI	GCTCC	2 cut(s)	435, 640
Lsp1109I	GCAGC	5 cut(s)	49, 230, 425, 448, 655
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	2 cut(s)	448, 571
MaeIII	GTNAC	2 cut(s)	179, 263
MalI	GATC	6 cut(s)	58, 260, 312, 341, 383, 660
MboI	GATC	6 cut(s)	56, 258, 310, 339, 381, 658
MboII	GAAGA	7 cut(s)	66, 100, 305, 311, 314, 566, 589
MfeI	CAATTG	1 cut(s)	684
MflI	RGATCY	2 cut(s)	258, 381
MhlI	GDGCHC	1 cut(s)	429
MluCI	AATT	4 cut(s)	44, 140, 605, 684
MlyI	GAGTC	2 cut(s)	191, 427
MnlI	CCTC	7 cut(s)	108, 173, 267, 478, 499, 520, 665
MroI	TCCGGA	1 cut(s)	295
MroNI	GCCGGC	1 cut(s)	622
MseI	TTAA	4 cut(s)	6, 18, 33, 174
MslI	CAYNNNNRTG	1 cut(s)	666
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	5 cut(s)	108, 296, 385, 514, 623
MspR9I	CCNGG	4 cut(s)	109, 212, 386, 514
MunI	CAATTG	1 cut(s)	684
MvaI	CCWGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	2 cut(s)	497, 539
NaeI	GCCGGC	1 cut(s)	624
NciI	CCSGG	3 cut(s)	109, 386, 514
NdeII	GATC	6 cut(s)	56, 258, 310, 339, 381, 658
NgoMIV	GCCGGC	1 cut(s)	622
NlaIII	CATG	4 cut(s)	376, 394, 568, 665
NlaIV	GGNNCC	1 cut(s)	427
NmuCI	GTSAC	1 cut(s)	263
PagI	TCATGA	2 cut(s)	564, 661
PceI	AGGCCT	1 cut(s)	118
PcsI	WCGNNNNNNNCGW	1 cut(s)	454
PdiI	GCCGGC	1 cut(s)	624
PfeI	GAWTC	1 cut(s)	680
PkrI	GCNGC	5 cut(s)	64, 220, 440, 463, 645
Ple19I	CGATCG	1 cut(s)	342
PleI	GAGTC	2 cut(s)	191, 426
PpsI	GAGTC	2 cut(s)	191, 426
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	427
PspOMI	GGGCCC	1 cut(s)	425
PspPI	GGNCC	2 cut(s)	425, 426
PsuI	RGATCY	2 cut(s)	258, 381
PvuI	CGATCG	1 cut(s)	342
PvuII	CAGCTG	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	666
SaqAI	TTAA	4 cut(s)	6, 18, 33, 174
SatI	GCNGC	5 cut(s)	63, 219, 439, 462, 644
Sau3AI	GATC	6 cut(s)	56, 258, 310, 339, 381, 658
Sau96I	GGNCC	2 cut(s)	425, 426
SchI	GAGTC	2 cut(s)	191, 427
ScrFI	CCNGG	4 cut(s)	109, 212, 386, 514
SduI	GDGCHC	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	666
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
SpeI	ACTAGT	1 cut(s)	397
Sse9I	AATT	4 cut(s)	44, 140, 605, 684
SseBI	AGGCCT	1 cut(s)	118
SspMI	CTAG	1 cut(s)	398
StuI	AGGCCT	1 cut(s)	118
StyD4I	CCNGG	4 cut(s)	107, 210, 384, 512
StyI	CCWWGG	2 cut(s)	501, 543
TaiI	ACGT	2 cut(s)	451, 574
TaqI	TCGA	1 cut(s)	79
TasI	AATT	4 cut(s)	44, 140, 605, 684
TfiI	GAWTC	1 cut(s)	680
Tru1I	TTAA	4 cut(s)	6, 18, 33, 174
Tru9I	TTAA	4 cut(s)	6, 18, 33, 174
TscAI	CASTG	1 cut(s)	682
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	5 cut(s)	62, 218, 438, 461, 643
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	6 cut(s)	56, 112, 243, 305, 389, 687
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	1 cut(s)	682
XapI	RAATTY	1 cut(s)	605
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.